Cla003284 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla003284
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	30S ribosomal protein S10-like (AHRD V1 **** A1YMX4_BRACM); contains Interpro domain(s) IPR005731 Ribosomal protein S10, bacterial
Location	Chr9 : 33027109 .. 33028979 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGTTTGTGATGATTTTGTTCGAAATGGAGCAAAATGTTACAATTTCTCTTTGTTTTGTAATGGGTGTAAGAATTTTTGTTCTTGGGTTTGTTTCCTATTTTTTTGGGGCTGTGGCTCAGGTTGTAATACACTGGTGGTGTTCTAAATTTCCATTTCGTTTCCAATTTCATTGCAAGTAGCTAAGGGATTTCCATTTTATTTCTTTAAGGTAATGGATTGGACAATGTTTGTGTTTTTGTCTAATGTTATGTTCATGTTTAGGGTGAAGATTTTGAGGCGCCTGGGACTTCTGCGCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTGTTCAGATAATGTTTTACCCTAGCTTTTCTTGTGGCTTTCTGAAGATATAAAATGGTCTGCAGAGAAACTTCTGAAACCAAAACCTAACTCTGAAATATATATTAGTTTTGATGAGTAAAGAAAGAGTGGCCAGAAAATATACAATGGAATCGTGTAATGAGATTATATCAGTATCATGATTCATGATCCTGCTAAGTTGACTGAGTAAGGTCATGAGTAAATGGAAAATTTAAATTGTCAGTATCAGTTATAGTTGTAGTGTTGCCTTAAAGGCTAATGACATGTTTGGAGTGTTTCTAAAATAGTTAAAATCACTTTTGTCATTTTCACTCCAAAAAAAAATGCTTTTAATCATTCAAAATCAGTTTTAATAGTATGAAAATTGTGTTTAAAAGCGTAAAATTAAACATTGAATTGATTTTGAGTGTTTAAAGGTGTGCTTCGAAGTGATTTTAAACATAATAAAAATGATTTTAACCATTTCAAAATCACTCCCAAGTATGCACTAAATAATGTGATGAATGTAATGCAGTATTGAAAGTTCCTAATGTAGTGGGATGGAGTGGAATGTTATGGTTCCATACTCCTTTGTATGCTAAAACAACCTCCTCAACTGGGTAGTGCATAGTTCTCCAATTGTACAATGGCTCTGCGGGCTTAATTTATGTGACTTATTGGCCAAGGCCATAGTTACAAAAAGGCCTAGTGAGCAAAGTCCAAAGAGAGACATTAAACCTGGCCACCTCTCAAAATGGATACCAAGATATTCACTTTGTACCTTTATATTAACAAAATGCCAATATGGTCTTCAGCAGGTCTCAGTGTTGTGTTATTTGATTTGTTTGATTATCCGTGGTATGAGGTGTGTCTAGGGACTTATCTTAGCCAATTGGTTTTGTAATTGATATTTGATAGTTTCCATCCTTTTCTTATGTTTGGCCGATTTTAACGAACTGAAGATGTTTGTGGTTTCAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

mRNA sequence

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCTGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTATTTAGTCCTTTATCATCCCATTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCGTTGCCGTCCACAAGGGTTTATGCTGCTCCTGAAGTTCTAGACTCCTCGGATACCATTGAACCGCCTCCGGAAATCCTGGAAGGCTCTGGAGTTGCCACTCTCGAGGGTGAAGATTTTGAGGCGCCTGGGACTTCTGCGCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCAAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL

Homology

[Close]

BLAST of Cla003284 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.5e-66
Identity = 144/212 (67.92%), Postives = 156/212 (73.58%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPST------RV 60
           MA SSLS TI+ SP   S  SS  +KP++   S  SS +   + L  S PS+      RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGSE-------------TSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of Cla003284 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 9.6e-64
Identity = 138/212 (65.09%), Postives = 160/212 (75.47%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSS---KPKLLPFSASS---STALKLKPLQFSLPSTRV 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++    S+ +  KP   S+  T+V
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKP---SVSLTKV 60

Query: 61  YAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKL 120
           +A P      DT++P PEIL+            E P +S++S+  D DK+APKQKIRIKL
Sbjct: 61  FAVP------DTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Cla003284 vs. Swiss-Prot
Match: RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-32
Identity = 65/98 (66.33%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of Cla003284 vs. Swiss-Prot
Match: RS10_CYAP7 (30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-32
Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of Cla003284 vs. Swiss-Prot
Match: RR10_PORPU (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.4e-32
Identity = 64/98 (65.31%), Postives = 82/98 (83.67%), Query Frame = 1


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+SPHV KD+R H
Sbjct: 8   KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR+H+R+IDI  P++QTID+LM+L+LP+GVD+EVKL
Sbjct: 68  FEIRSHRRIIDIHQPSSQTIDALMKLNLPSGVDIEVKL 105

[Close]

BLAST of Cla003284 vs. TrEMBL
Match: A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 3.5e-105
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK  PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Cla003284 vs. TrEMBL
Match: W9QQJ9_9ROSA (30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 154/213 (72.30%), Postives = 170/213 (79.81%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSAS-SSTALKLKPLQFSLPSTRVYAAPE 60
           M +SS+SAT+IPS +L +     SSKPKL  FS   ++ + KL+ L+ S PSTRVYAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 61  VLDSSDTIEPPP------EILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIK 120
           VL      EPPP      E L+GSG   +E  D E P TS+LS+G D DK APKQKIRIK
Sbjct: 61  VL------EPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIK 120

Query: 121 LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRT 180
           LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRT
Sbjct: 121 LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRT 180

Query: 181 HQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           HQRLIDILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 HQRLIDILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]

BLAST of Cla003284 vs. TrEMBL
Match: M5WVB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 5.1e-72
Identity = 149/207 (71.98%), Postives = 168/207 (81.16%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSA-SSSTALKLKPLQFSLPSTRVYAAPE 60
           MA+SS+SA +IPS  L +     SSK  +  F+  S++ ALKL+ L+ S  STRVYAAPE
Sbjct: 1   MAVSSMSAILIPSLPLTNSSPFPSSKLNVSSFALPSANNALKLRALRPSQSSTRVYAAPE 60

Query: 61  VLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S +++ PPPE        TLE    E P TS+L++G D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESQESLVPPPE--------TLEVGSSETPSTSSLNVGGDADKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]

BLAST of Cla003284 vs. TrEMBL
Match: A0A067L5B3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1)

HSP 1 Score: 275.0 bits (702), Expect = 7.4e-71
Identity = 147/213 (69.01%), Postives = 165/213 (77.46%), Query Frame = 1


Query: 1   MAISSLSATIIPS-PTLFSPLSSHSSKPKLLPFSASSSTALK------LKPLQFSLPSTR 60
           MAISS++ T+IPS  T  S  S   ++ KL   S+SSS++           L+ S  + R
Sbjct: 1   MAISSITTTLIPSLATSSSFASKQPTQTKLFSSSSSSSSSFSNSANSVFSLLKISSSTIR 60

Query: 61  VYAAPEVLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIK 120
           V A PE LDS++ +E PPE ++ S   T +  D E P + +LSIG D DKLAPKQKIRIK
Sbjct: 61  VLAVPETLDSAEPLETPPETVDESDPDTFQIGDSETPSSPSLSIGADADKLAPKQKIRIK 120

Query: 121 LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRT 180
           LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRT
Sbjct: 121 LRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRT 180

Query: 181 HQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           HQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 HQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213

[Close]

BLAST of Cla003284 vs. TrEMBL
Match: A0A0L9VCG1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1)

HSP 1 Score: 268.1 bits (684), Expect = 9.0e-69
Identity = 145/208 (69.71%), Postives = 159/208 (76.44%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MA+SSLS T +        LSS    P L  FS +S      KPLQ    ST V+ APEV
Sbjct: 1   MAVSSLSVTPLSLSNSSPSLSSKLKSPSLCLFSGNSLRVTCPKPLQ---SSTVVHVAPEV 60

Query: 61  LDSS-DTIEPPPEILEG-SGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYW 120
           LDSS D ++PPPE L+  S   T +  +   P TSA+SIG D D +APKQKIRIKLRSYW
Sbjct: 61  LDSSPDPLDPPPETLDDDSEPTTYQVGELGTPSTSAISIGADADAMAPKQKIRIKLRSYW 120

Query: 121 VPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLI 180
           VPLIEDSCKQI+DAAR TNAKTMGPVPLPTK+R+YCVLKSPHVHKDARFHFEIRTHQRLI
Sbjct: 121 VPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLI 180

Query: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           DILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 205

[Close]

BLAST of Cla003284 vs. NCBI nr
Match: gi|659126003|ref|XP_008462962.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 396.0 bits (1016), Expect = 4.1e-107
Identity = 200/206 (97.09%), Postives = 201/206 (97.57%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK LPF  SSSTALKLKPLQFSLPSTRVYAAPEV
Sbjct: 64  MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 123

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSSDTIEPPPEILEGSGVATLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 124 LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 183

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 184 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 243

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 244 LYPTAQTIDSLMQLDLPAGVDVEVKL 269

[Close]

BLAST of Cla003284 vs. NCBI nr
Match: gi|449465511|ref|XP_004150471.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus])

HSP 1 Score: 389.0 bits (998), Expect = 5.0e-105
Identity = 196/206 (95.15%), Postives = 199/206 (96.60%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSASSSTALKLKPLQFSLPSTRVYAAPEV 60
           MAISSLSATIIPSPTLF+ LSSHSSKPK  PF ASSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFE PGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Cla003284 vs. NCBI nr
Match: gi|1009169482|ref|XP_015865689.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 303.1 bits (775), Expect = 3.6e-79
Identity = 157/207 (75.85%), Postives = 173/207 (83.57%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFS-ASSSTALKLKPLQFSLPSTRVYAAPE 60
           MA+SS+SAT++PS  L        S PKL  FS AS++ +LKL+ L+ S   TRVYAAPE
Sbjct: 1   MAVSSISATLVPSLPLPKSSPFSHSNPKLSSFSLASANCSLKLRALKPSQSFTRVYAAPE 60

Query: 61  VLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S DT++PPPE L+GSG    E    E P TS+LS+G D DKLAPKQKIRIKLRSYWV
Sbjct: 61  VLESQDTLQPPPETLDGSGSDASEVGGSEIPSTSSLSVGADADKLAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207

[Close]

BLAST of Cla003284 vs. NCBI nr
Match: gi|657953696|ref|XP_008364077.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica])

HSP 1 Score: 286.2 bits (731), Expect = 4.6e-74
Identity = 153/207 (73.91%), Postives = 171/207 (82.61%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSA-SSSTALKLKPLQFSLPSTRVYAAPE 60
           MA+SS+S+ +IPS  L +  +  +SKPKL  F+  S++ ALKL+  + S  STRVYAAPE
Sbjct: 1   MAVSSMSSILIPSLPLSNSSAFPTSKPKLSSFALPSANNALKLRASRPSQSSTRVYAAPE 60

Query: 61  VLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S +T+ PPPE        TLE    E P TS+LSIGED DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESQETLIPPPE--------TLEVGSSETPSTSSLSIGEDGDKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]

BLAST of Cla003284 vs. NCBI nr
Match: gi|658028895|ref|XP_008349887.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica])

HSP 1 Score: 285.8 bits (730), Expect = 6.0e-74
Identity = 153/207 (73.91%), Postives = 170/207 (82.13%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFSPLSSHSSKPKLLPFSA-SSSTALKLKPLQFSLPSTRVYAAPE 60
           MA+SS+S  +IPS  L    +S +SKPKL  FS  S+++ALK++  + S  STRVYAAPE
Sbjct: 1   MAVSSMSTILIPSLPLSKSTASPTSKPKLSSFSLPSANSALKVRASRPSQSSTRVYAAPE 60

Query: 61  VLDSSDTIEPPPEILEGSGVATLEGEDFEAPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S +T+ PPPE        TLE    E P TS+LSIG D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESPETLVPPPE--------TLEVGSSETPSTSSLSIGGDGDKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

The following BLAST results are available for this feature:

BLAST of Cla003284 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR10_MESCR	3.5e-66	67.92	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS...	[more]
RR10_ARATH	9.6e-64	65.09	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S...	[more]
RR10_CYAPA	1.5e-32	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1	[more]
RS10_CYAP7	5.7e-32	62.00	30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1	[more]
RR10_PORPU	7.4e-32	65.31	30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1	[more]

BLAST of Cla003284 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH6_CUCSA	3.5e-105	95.15	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1	[more]
W9QQJ9_9ROSA	7.1e-74	72.30	30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1	[more]
M5WVB4_PRUPE	5.1e-72	71.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1	[more]
A0A067L5B3_JATCU	7.4e-71	69.01	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1	[more]
A0A0L9VCG1_PHAAN	9.0e-69	69.71	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1	[more]

BLAST of Cla003284 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659126003\|ref\|XP_008462962.1\|	4.1e-107	97.09	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
gi\|449465511\|ref\|XP_004150471.1\|	5.0e-105	95.15	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus]	[more]
gi\|1009169482\|ref\|XP_015865689.1\|	3.6e-79	75.85	PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba]	[more]
gi\|657953696\|ref\|XP_008364077.1\|	4.6e-74	73.91	PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica]	[more]
gi\|658028895\|ref\|XP_008349887.1\|	6.0e-74	73.91	PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006412	translation
biological_process	GO:0044763	single-organism cellular process
biological_process	GO:0044711	single-organism biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0009657	plastid organization
biological_process	GO:0034660	ncRNA metabolic process
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003723	RNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU54720	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla003284	Cla003284.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU54720	WMU54720	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 6.5E-15coord: 165..179 score: 6.5E-15coord: 144..159 score: 6.5
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 2..206 score: 3.6
IPR001848	Ribosomal protein S10	TIGRFAMs	TIGR01049	TIGR01049	coord: 108..205 score: 1.2
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148 scor
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 108..206 score: 4.0
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 score: 3.2
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 score: 3.9
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 109..206 score: 2.88
None	No IPR available	PANTHER	PTHR11700:SF9	37S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 2..206 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla003284	Cla97C09G182460	Watermelon (97103) v2	wmwmbB042
Cla003284	Csa3G769090	Cucumber (Chinese Long) v2	cuwmB182
Cla003284	MELO3C024899	Melon (DHL92) v3.5.1	mewmB185
Cla003284	ClCG09G021040	Watermelon (Charleston Gray)	wcgwmB008
Cla003284	CSPI03G34540	Wild cucumber (PI 183967)	cpiwmB186
Cla003284	Cucsa.281490	Cucumber (Gy14) v1	cgywmB516
Cla003284	CmaCh09G009860	Cucurbita maxima (Rimu)	cmawmB009
Cla003284	CmaCh01G010940	Cucurbita maxima (Rimu)	cmawmB410
Cla003284	CmoCh09G009890	Cucurbita moschata (Rifu)	cmowmB001
Cla003284	CmoCh01G011410	Cucurbita moschata (Rifu)	cmowmB404
Cla003284	Lsi02G018570	Bottle gourd (USVL1VR-Ls)	lsiwmB177
Cla003284	Cp4.1LG02g00620	Cucurbita pepo (Zucchini)	cpewmB531
Cla003284	Cp4.1LG06g08510	Cucurbita pepo (Zucchini)	cpewmB753
Cla003284	CsGy7G008340	Cucumber (Gy14) v2	cgybwmB531
Cla003284	MELO3C024899.2	Melon (DHL92) v3.6.1	medwmB197
Cla003284	Carg22394	Silver-seed gourd	carwmB0886
Cla003284	Carg12851	Silver-seed gourd	carwmB0903
Cla003284	CsaV3_7G018640	Cucumber (Chinese Long) v3	cucwmB594
Cla003284	Bhi09G001447	Wax gourd	wgowmB581

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla003284	Cucumber (Chinese Long) v2	cuwmB563