CmaCh01G010940 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh01G010940
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
Description30S ribosomal protein S10
LocationCma_Chr01 : 8046261 .. 8048184 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATAACGGTAGAGGTGGGAGCAAAAAGCTTCCGCCATTGATGCTCGGAGGAATTTCAATGGCTATTTCTTCGCTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATATCATCTCTTTCTTCTAAACCTAAACTTCTGCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTAGACTCCCCTGGCACCTTTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGTTTGTGATAATGTTGCAATTTCTCTCTGTTTTTTGTGATGGGTGTAAGAATTGTTGTTCTTGTATGGTCTTTAATAGTTTTGGTTTTAGCCCGGGGTGTCATTAACTCGTGCTCTAGATTTCCATTTTGTCTTCAATATTTTTTTTTTTTTCCCCCCTTTAAGATCATGGATGAAACAGTGCTTCTATTATTGCTTTTAATGTATTGTTTATGTTTAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGCATTGGCGAGGATGTGGATAAGGTAACTTTTATGTTTTCTAGACAGTGTTTTACTCTAGCATGCTGTAGCCTGCTAAAGATTATAAAATATTCTGCAGAGCAACTTCTGAAACCAAGACTAAACTCTGAAATTTGTATTGGTTTTAGAGTGACTAGAAAATATTCAATGAAATCATTTGATGAGGTTATATGTACGATGATTGATGATCCTACTAGGTTATGTAGGTTAGTTCTTATGAGATCCCACATCGGTTGGAGAGGAGAACGGAACCTTCATTATAAGAGTGTGAAAACCTCCTCTTAGTAGATACGTTTTAAAACCTTGAGGGAAAGCCCAAAGAAGACAATATTGCTAGCAGTGAACTTGGGCTCTTACAAATGGTATTAGAGTAAGTCGCTAGGCGGTGTGCTAGCGAAGACGCTGGGTACTTAAGGGGGTGGATTGTGAGATCCCACATCAGTTGGACAGGGGAACGAAACATTCCTTATAAGAGTGTTGAACCCTCTCCCTAGTAAACGCGTTTTAAAATCTTAAGGGGAAGCCTAAAAGAGAAAGCCTTAAAAGGACAATATCTATTAACGATGGACTTGGACTGTTACAGTTTCAGACTGAATAGAAAATTTATGTATATATTGGCTCTCGTGTTAACTAGAAGGCTAGATAGAAGGTGAGAGATCTCATATAACATCAAAAGTTCTCAATGTTTGGGAGTGTTTGGAATATTACAGTCTTCTTTACTTCTTTTTATCCTAGAGGAAACTTTTCAACCGAGTAGTACGTAGTTCTCCAATTGTACAATGGTTTCGTTGGCTTCATTTTTGCGATTTATTGGTCAGGATATCGATGTTCATTTTGTACCTTTTTTTTTACAGTATGCCAATATGGTCTTCATCAGATTGTGATGTTAGATTATGTGATTTGTTTGCTTATCAGCTCATCTTTTCCATAGGGTGCAGTTTGGGACTTATCTTGGTTTTTTTAATTGCTAGTGTCCATATTCTTCTTATGTTTGGAAATTGTTTAGTGACTAAAACTGTTTATGGTTTCAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTTCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAGCTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

mRNA sequence

ATAACGGTAGAGGTGGGAGCAAAAAGCTTCCGCCATTGATGCTCGGAGGAATTTCAATGGCTATTTCTTCGCTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATATCATCTCTTTCTTCTAAACCTAAACTTCTGCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTAGACTCCCCTGGCACCTTTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGCATTGGCGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTTCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAGCTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGCTCGGAGGAATTTCAATGGCTATTTCTTCGCTCTCTGCCACTATAATTCCATCTCCAACTCTATTTGGTCCTATATCATCTCTTTCTTCTAAACCTAAACTTCTGCCCTTCTCTGCTTCCTCTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTAGACTCCCCTGGCACCTTTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGCATTGGCGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACAAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTTCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAGCTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Protein sequence

MLGGISMAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEVLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Homology
[Close]
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 245.4 bits (625), Expect = 5.8e-64
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFG-PISSLSS---KPKLLPFSASSTSVSKLNPLQFSLSSTRVYA 66
           MA+S++S+ ++PS   FG P SS SS   K  LLP S++   +S     + S+S T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 67  APEVLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRS 126
            P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  VPDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 127 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 186
           YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 187 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-63
Identity = 141/212 (66.51%), Postives = 158/212 (74.53%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASST------SVSKLNPLQFSLSSTRV 66
           MA SSLS TI+ SP      SS  +KP++   S  S+      ++S  +P   S S+ RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 67  YAAPEVLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKL 126
           +AAPEVL+S  T         G  + V EG +     TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET---------GPESYVEEGSE-----TSALGIGADSDQMAPKQKIRIKL 120

Query: 127 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 186
           RSYWVPLIEDSCKQI+DAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 187 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match: RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.3e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 1 

Query: 115 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 174
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 175 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match: RS10_CYAP7 (30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 113 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 172
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 173 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match: RR10_PORPU (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.4e-32
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 1 

Query: 115 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 174
           KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+SPHV KD+R H
Sbjct: 8   KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSREH 67

Query: 175 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           FEIR+H+R+IDI  P++QTID+LM+L+LP+GVD+EVKL
Sbjct: 68  FEIRSHRRIIDIHQPSSQTIDALMKLNLPSGVDIEVKL 105

[Close]
BLAST of CmaCh01G010940 vs. TrEMBL
Match: A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 360.1 bits (923), Expect = 1.8e-96
Identity = 185/206 (89.81%), Postives = 191/206 (92.72%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66
           MAISSLSATIIPSPTLF  +SS SSKPK  PF ASS++  KL PLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126
           LDSP T EPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 213
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CmaCh01G010940 vs. TrEMBL
Match: W9QQJ9_9ROSA (30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 3.4e-71
Identity = 151/207 (72.95%), Postives = 165/207 (79.71%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVS-KLNPLQFSLSSTRVYAAPE 66
           M +SS+SAT+IPS +L       SSKPKL  FS    + S KL  L+ S  STRVYAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 67  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 126
           VL+ P       E L+GSGA  +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 127 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 186
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 187 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]
BLAST of CmaCh01G010940 vs. TrEMBL
Match: M5WVB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.3e-67
Identity = 146/207 (70.53%), Postives = 163/207 (78.74%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSA-SSTSVSKLNPLQFSLSSTRVYAAPE 66
           MA+SS+SA +IPS  L       SSK  +  F+  S+ +  KL  L+ S SSTRVYAAPE
Sbjct: 1   MAVSSMSAILIPSLPLTNSSPFPSSKLNVSSFALPSANNALKLRALRPSQSSTRVYAAPE 60

Query: 67  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 126
           VL+S  +  PPPE LE   +        E P TS+L++G D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESQESLVPPPETLEVGSS--------ETPSTSSLNVGGDADKASPKQKIRIKLRSYFV 120

Query: 127 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 186
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 187 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]
BLAST of CmaCh01G010940 vs. TrEMBL
Match: A0A067L5B3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 3.0e-67
Identity = 151/220 (68.64%), Postives = 163/220 (74.09%), Query Frame = 1 

Query: 7   MAISSLSATIIPS-----------PT---LFGPISSLSSKPKLLPFSASSTSVSKLNPLQ 66
           MAISS++ T+IPS           PT   LF   SS SS      FS S+ SV  L  L+
Sbjct: 1   MAISSITTTLIPSLATSSSFASKQPTQTKLFSSSSSSSSS-----FSNSANSVFSL--LK 60

Query: 67  FSLSSTRVYAAPEVLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAP 126
            S S+ RV A PE LDS    E PPE ++ S     +  D E P + +LSIG D DKLAP
Sbjct: 61  ISSSTIRVLAVPETLDSAEPLETPPETVDESDPDTFQIGDSETPSSPSLSIGADADKLAP 120

Query: 127 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 186
           KQKIRIKLRSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR
Sbjct: 121 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 180

Query: 187 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213

[Close]
BLAST of CmaCh01G010940 vs. TrEMBL
Match: A0A0L9VCG1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.3e-66
Identity = 144/208 (69.23%), Postives = 158/208 (75.96%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66
           MA+SSLS T +        +SS    P L  FS +S  V+   PLQ   SST V+ APEV
Sbjct: 1   MAVSSLSVTPLSLSNSSPSLSSKLKSPSLCLFSGNSLRVTCPKPLQ---SSTVVHVAPEV 60

Query: 67  LDS-PGTFEPPPEILEG-SGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYW 126
           LDS P   +PPPE L+  S     +  +   P TSA+SIG D D +APKQKIRIKLRSYW
Sbjct: 61  LDSSPDPLDPPPETLDDDSEPTTYQVGELGTPSTSAISIGADADAMAPKQKIRIKLRSYW 120

Query: 127 VPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLI 186
           VPLIEDSCKQILDAAR TNAKTMGPVPLPTK+R+YCVLKSPHVHKDARFHFEIRTHQRLI
Sbjct: 121 VPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLI 180

Query: 187 DILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           DILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 205

[Close]
BLAST of CmaCh01G010940 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 245.4 bits (625), Expect = 3.2e-65
Identity = 141/210 (67.14%), Postives = 163/210 (77.62%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFG-PISSLSS---KPKLLPFSASSTSVSKLNPLQFSLSSTRVYA 66
           MA+S++S+ ++PS   FG P SS SS   K  LLP S++   +S     + S+S T+V+A
Sbjct: 1   MAVSTVSSFLLPS---FGIPSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFA 60

Query: 67  APEVLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRS 126
            P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRS
Sbjct: 61  VPDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRS 120

Query: 127 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 186
           YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR
Sbjct: 121 YWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR 180

Query: 187 LIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           +IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 MIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of CmaCh01G010940 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-07
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1 

Query: 96  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTK 155
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 156 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]
BLAST of CmaCh01G010940 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.0e-07
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1 

Query: 96  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTK 155
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 156 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]
BLAST of CmaCh01G010940 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.2e-06
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 115 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 174
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       K+P       + 
Sbjct: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 81

Query: 175 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213
            FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 82  RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119

[Close]
BLAST of CmaCh01G010940 vs. NCBI nr
Match: gi|659126003|ref|XP_008462962.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 363.6 bits (932), Expect = 2.3e-97
Identity = 188/207 (90.82%), Postives = 192/207 (92.75%), Query Frame = 1 

Query: 6   SMAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPE 65
           SMAISSLSATIIPSPTLF  +SS SSKPK LPF  SS++  KL PLQFSL STRVYAAPE
Sbjct: 63  SMAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPE 122

Query: 66  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 125
           VLDS  T EPPPEILEGSG A LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV
Sbjct: 123 VLDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 182

Query: 126 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 185
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 183 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 242

Query: 186 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 243 ILYPTAQTIDSLMQLDLPAGVDVEVKL 269

[Close]
BLAST of CmaCh01G010940 vs. NCBI nr
Match: gi|449465511|ref|XP_004150471.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus])

HSP 1 Score: 360.1 bits (923), Expect = 2.6e-96
Identity = 185/206 (89.81%), Postives = 191/206 (92.72%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVSKLNPLQFSLSSTRVYAAPEV 66
           MAISSLSATIIPSPTLF  +SS SSKPK  PF ASS++  KL PLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 67  LDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 126
           LDSP T EPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 127 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 186
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 187 LYPTAQTIDSLMQLDLPAGVDVEVKL 213
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CmaCh01G010940 vs. NCBI nr
Match: gi|1009169482|ref|XP_015865689.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 293.5 bits (750), Expect = 2.9e-76
Identity = 157/207 (75.85%), Postives = 171/207 (82.61%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVS-KLNPLQFSLSSTRVYAAPE 66
           MA+SS+SAT++PS  L        S PKL  FS +S + S KL  L+ S S TRVYAAPE
Sbjct: 1   MAVSSISATLVPSLPLPKSSPFSHSNPKLSSFSLASANCSLKLRALKPSQSFTRVYAAPE 60

Query: 67  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 126
           VL+S  T +PPPE L+GSG+   E    E+P TS+LS+G D DKLAPKQKIRIKLRSYWV
Sbjct: 61  VLESQDTLQPPPETLDGSGSDASEVGGSEIPSTSSLSVGADADKLAPKQKIRIKLRSYWV 120

Query: 127 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 186
           PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 187 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207

[Close]
BLAST of CmaCh01G010940 vs. NCBI nr
Match: gi|703069318|ref|XP_010088470.1| (30S ribosomal protein S10 [Morus notabilis])

HSP 1 Score: 276.2 bits (705), Expect = 4.9e-71
Identity = 151/207 (72.95%), Postives = 165/207 (79.71%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFSASSTSVS-KLNPLQFSLSSTRVYAAPE 66
           M +SS+SAT+IPS +L       SSKPKL  FS    + S KL  L+ S  STRVYAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 67  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 126
           VL+ P       E L+GSGA  +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 127 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 186
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 187 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]
BLAST of CmaCh01G010940 vs. NCBI nr
Match: gi|470110576|ref|XP_004291556.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Fragaria vesca subsp. vesca])

HSP 1 Score: 276.2 bits (705), Expect = 4.9e-71
Identity = 157/207 (75.85%), Postives = 169/207 (81.64%), Query Frame = 1 

Query: 7   MAISSLSATIIPSPTLFGPISSLSSKPKLLPFS-ASSTSVSKLNPLQFSLSSTRVYAAPE 66
           MA+SS+SAT+IPS  L       SS PKL  FS  +S + +KL  L+ SLSSTRVYAAPE
Sbjct: 1   MAVSSISATLIPSLPLSNSSPFPSSIPKLSSFSFPASHNATKLRALRPSLSSTRVYAAPE 60

Query: 67  VLDSPGTFEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 126
           VLDSP    PPPEILEG  +        E P TS+LSIG D DK+ PKQKIRIKLRSY+V
Sbjct: 61  VLDSP---VPPPEILEGPNSD-------ETPSTSSLSIGGD-DKITPKQKIRIKLRSYFV 120

Query: 127 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 186
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 187 ILYPTAQTIDSLMQLDLPAGVDVEVKL 213
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 196

The following BLAST results are available for this feature:
BLAST of CmaCh01G010940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR10_ARATH5.8e-6467.1430S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S... [more]
RR10_MESCR2.9e-6366.5130S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS... [more]
RR10_CYAPA5.3e-3366.33Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1[more]
RS10_CYAP73.4e-3262.0030S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1[more]
RR10_PORPU3.4e-3265.3130S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1[more]
BLAST of CmaCh01G010940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEH6_CUCSA1.8e-9689.81Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1[more]
W9QQJ9_9ROSA3.4e-7172.9530S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1[more]
M5WVB4_PRUPE1.3e-6770.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1[more]
A0A067L5B3_JATCU3.0e-6768.64Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1[more]
A0A0L9VCG1_PHAAN3.3e-6669.23Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1[more]
BLAST of CmaCh01G010940 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13120.13.2e-6567.14 Ribosomal protein S10p/S20e family protein[more]
AT3G45030.19.0e-0729.66 Ribosomal protein S10p/S20e family protein[more]
AT5G62300.19.0e-0729.66 Ribosomal protein S10p/S20e family protein[more]
AT3G47370.21.2e-0631.31 Ribosomal protein S10p/S20e family protein[more]
BLAST of CmaCh01G010940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126003|ref|XP_008462962.1|2.3e-9790.82PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo][more]
gi|449465511|ref|XP_004150471.1|2.6e-9689.81PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus][more]
gi|1009169482|ref|XP_015865689.1|2.9e-7675.85PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba][more]
gi|703069318|ref|XP_010088470.1|4.9e-7172.9530S ribosomal protein S10 [Morus notabilis][more]
gi|470110576|ref|XP_004291556.1|4.9e-7175.85PREDICTED: 30S ribosomal protein S10, chloroplastic [Fragaria vesca subsp. vesca... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001848Ribosomal_S10
IPR018268Ribosomal_S10_CS
IPR027486Ribosomal_S10_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0015979 photosynthesis
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh01G010940.1CmaCh01G010940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 115..128
score: 6.9E-15coord: 150..165
score: 6.9E-15coord: 171..185
score: 6.9
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 113..212
score: 24
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 8..212
score: 1.6
IPR001848Ribosomal protein S10TIGRFAMsTIGR01049TIGR01049coord: 114..211
score: 1.5
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 139..154
scor
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 114..212
score: 5.8
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 117..211
score: 4.3
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 117..211
score: 5.5
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 115..212
score: 4.05
NoneNo IPR availablePANTHERPTHR11700:SF937S RIBOSOMAL PROTEIN S10, MITOCHONDRIALcoord: 8..212
score: 1.6

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh01G010940Cucsa.281490Cucumber (Gy14) v1cgycmaB0784
CmaCh01G010940Cla003284Watermelon (97103) v1cmawmB410
CmaCh01G010940Csa3G769090Cucumber (Chinese Long) v2cmacuB459
CmaCh01G010940MELO3C024899Melon (DHL92) v3.5.1cmameB401
CmaCh01G010940ClCG09G021040Watermelon (Charleston Gray)cmawcgB380
CmaCh01G010940CSPI03G34540Wild cucumber (PI 183967)cmacpiB462
CmaCh01G010940CmoCh01G011410Cucurbita moschata (Rifu)cmacmoB468
CmaCh01G010940CmoCh09G009890Cucurbita moschata (Rifu)cmacmoB436
CmaCh01G010940Lsi02G018570Bottle gourd (USVL1VR-Ls)cmalsiB409
CmaCh01G010940Cp4.1LG02g00620Cucurbita pepo (Zucchini)cmacpeB490
CmaCh01G010940Cp4.1LG06g08510Cucurbita pepo (Zucchini)cmacpeB508
CmaCh01G010940MELO3C024899.2Melon (DHL92) v3.6.1cmamedB455
CmaCh01G010940CsaV3_7G018640Cucumber (Chinese Long) v3cmacucB0585
CmaCh01G010940Cla97C09G182460Watermelon (97103) v2cmawmbB514
CmaCh01G010940Bhi09G001447Wax gourdcmawgoB0616
CmaCh01G010940CsGy7G008340Cucumber (Gy14) v2cgybcmaB928
CmaCh01G010940Carg12851Silver-seed gourdcarcmaB1245
CmaCh01G010940Carg22394Silver-seed gourdcarcmaB1224
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh01G010940CmaCh09G009860Cucurbita maxima (Rimu)cmacmaB052
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh01G010940Wild cucumber (PI 183967)cmacpiB506
CmaCh01G010940Cucumber (Chinese Long) v2cmacuB498
CmaCh01G010940Cucumber (Chinese Long) v2cmacuB501
CmaCh01G010940Melon (DHL92) v3.5.1cmameB395