Cp4.1LG02g00620 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG02g00620
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
Description30S ribosomal protein S10
LocationCp4.1LG02 : 5152548 .. 5155966 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TAAAGCACAGAGAAATTTATTTGGATAACGGTAGAGGTGGGAGCAAAAGCTTCCGCCATTGATACTCGGAGGAATTTCAATGGCTATTTCTTCACTCTCTGCCACCATAATTCCATCTCCAACTCTATTGGGTCCTATTTCATCTCTTTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCCTTTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTGGACTCCCCCGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGTTTGTGATAATGTTGCAATTTCTCTATGTTTTTTGTGATGGGTGTAAGAATTGTTGTTCTTATATGGTCTTAATAGTTCTGGTTTTAGCCTGGGTTGTCATTAACTCGTGCTCTAGATTTCTATTTTGTCTTCAATTGCATTGCAAGTAACTTGGGATTTTTTTTTTCCTTTAAGATCATGGATGAAACAGTGCTTCTATTATTGTTTTTAATGTATTGTTCATGTTTAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGGTAACTTTTATTGTTTCCAGATGGTGTTTTACTCTAGCATCCTGTAGCTTGCTAAAGATTATAAAATATTCTGCAGAGCAATTTCTGAAACCAAGACTAAACTATGAAATTGGTATTGGTTTTAGAGTGACTAGAAAATATACAATGAAATCATTTGTTTAGGTTATATGTATGATGATTGATGATCATGCTAGGTTATCCAAGTTAGTTCCTGTGAGATCCCACATCAGTTGGAGAGGAGAACGGAATTTTCCTTATAAAAATGTGGAAACCTAGTAGATGCGTTTTTAAAACCTCCAGGGGAAATTTGGAAGGGAAAATATCTGCTAACGGTGGACTTGAGTTATTACAAATGGTATCAAAGTCAGTCATCGAGCGGTGTGCCAGTGAGGACACTGGCCCCTAAGGGGGGTGGATTGTGAGATCCCTCATCGGTTGGAGAGGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCCCTAGTAGACGTGTTTTATAATCTTGAGGGGAAGCCCGGAAGGAAAAGCTCAAAGAGGACAATATCTATTAGCGGTGGACTTGGACTATTATGTTACAGTTCTTAACTAAATAGAAAATTTATGTACATATTGGTTCACGTGTTAACTAGAAGGCTATATAGAAGGTGAGAGATCTCATATAACATTGAAAGTTCTCAATGTATGTGAATGTTTTGAATATTACTGTCTTCTTACTCCTTTTTATCCTAAAGGAAACTTCTCAACCAAGTAGTACAAAGTTCTCCAATTATACAATGGTTTCATTGGCTTCATTTTTTCGACTTATTGGCTAGGATATCGACGTTGATTTTTGTACCTTTCTTTTTTTACAGTATGCCAATATGATCTTCATCAGATGGTCATGTTAGATTATGTGATTTGTTTGCTTATCAGCTCATCTTTGCCATAGTGTCCATCTTCTTCTTATGTTTGGAAATTTTTTAGTGACTAAAGATGTTCATGGTTTCAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGAAGAGAACACTTTCACCTTGGAAAAGTTCGTTCCCACGAGTCTTTTGTAGGTCAGTATTCCTTTTTCGTGTCTATTGTCGTTCATGATGACATGTTATATTGCACCCTGTATTCCTTTTCTGCTCCGTTATATTCTTCAAATATTCATCTATTACTAGTTTTGCAACACTAAATTTTAAATGCTTGGCCGCGTTTCTAAATGTACCTATATCAATGTTGAGAAATCTCTGCTTTAGTCTATTGAACATTGTGAAGGATAAGGATCTATGTGCTTTATATGCTATGTCAATGGCTTTATTTTCTTCTTGATAGCTTTGTTTTCCATGGAAGAGTGTTTTTGTTCTTGTATAGTTCAGTAATTGAAGATCTTGATTGAAACAAACCACTAGAATTAGAAATGAGCTAATCTGTTTCAGTGCATGCAAAAATAAGCCTATGAAGAACTAGGGATTATGCTAGTAGGAAGGAGGGGACTGAATTCTCTTACAATGGAAAAATAGAAGGGAGTAGTGTAATGAAGGCTCTAGGTGCGAGGCAGAAACGAAATCAATGGTTGAGATTTAGATTTTTGATAGAGCTAGGGTGACATAGGGTGACATGGGGAGAGAAGACGATGGCTTTGTTTCGAACTGTAACAGTCTAGACCCACCGCTAGCAGATGTTGTCTGCTTTTGCCCGTTATGTATCGCTGTCGGCCTCACGGTTTTAAAACGTGTCTATTAGGGAGAGGTTTCCACACTCTTATAAGGAATGCTTCGTTCCCCTCTCCAACCGATGTGGGATCTCACAATCCCCCTTTGGGAGCCAGTGTCCTCGTTGGCACACCGTCCGGTGGCTGGCTCTAATACCATTTGTAACATCCCAAACCCACTACTAGTAGATATTGTCCGCTTTAACCCATTAAGTATCGCCGTCAGCCTCACGGTTTTAAAACACATCTATTAGGGAGAGGTTTTCACACCCTTGTAAGGAATGTTTCCTTCCCTTCTCCAACCGATGTGGGATCTCGCATGAACAAACATAGCAAGAAAACAGAAGGAAGAGTTCGGTGTAATGTTTTATTTCCATTTTTTGCTGATGTATTCGTTCTTCCAAATGAATGATCTCCCCCCTCACTTTCCTATTTGCGACATGTCTATGAAACCATGGGAGCTAGTTCTGCAGCTCGTTCGTTTATGTCGATAATCATATGGCAGACACTTTGATTTCAACCCCATATTCATGCTTTCTCTAACACTTTTTGGTTGGTTTCTTCCATGTTAGGCGATGAATTTCAGAGTATGTGATCACTGAGGTATATCAAAGCTTGAAATCGTGTAAACGATAACGATGGAGCACGTCGTCGTAGAGAGAGTAGCTGGTTCTTGCAGTCTCTTAATGAATTGTATTAACTGAAATTGAGAATGGCTGTATCCAATATGCATAATCAACTATTTGCTTAGCCCTATGATGATATGATTTTGCTTCTAATGTTCCATCAAATGATTTTGCTTCTAAT

mRNA sequence

TAAAGCACAGAGAAATTTATTTGGATAACGGTAGAGGTGGGAGCAAAAGCTTCCGCCATTGATACTCGGAGGAATTTCAATGGCTATTTCTTCACTCTCTGCCACCATAATTCCATCTCCAACTCTATTGGGTCCTATTTCATCTCTTTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCCTTTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTGGACTCCCCCGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGAAGAGAACACTTTCACCTTGGAAAAGTTCGTTCCCACGAGTCTTTTGTAGGCGATGAATTTCAGAGTATGTGATCACTGAGGTATATCAAAGCTTGAAATCGTGTAAACGATAACGATGGAGCACGTCGTCGTAGAGAGAGTAGCTGGTTCTTGCAGTCTCTTAATGAATTGTATTAACTGAAATTGAGAATGGCTGTATCCAATATGCATAATCAACTATTTGCTTAGCCCTATGATGATATGATTTTGCTTCTAATGTTCCATCAAATGATTTTGCTTCTAAT

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCCACCATAATTCCATCTCCAACTCTATTGGGTCCTATTTCATCTCTTTCTTCTAAACCTAAACTTCTTCCCTTCTCTGCTTCCTTTACTTCTGTTTCAAAGCTCAACCCCCTTCAATTTTCGTTGTCCTCGACTAGGGTTTATGCCGCTCCTGAAGTTCTGGACTCCCCCGGCACCATTGAACCGCCTCCGGAAATCTTGGAGGGCTCTGGAGCTGCCGTTCTCGAGGGTGAAGATTTTGAGGTGCCTGGGACTTCAGCGCTAAGTATTGGTGAGGATGTGGATAAGCTGGCCCCAAAGCAGAAAATAAGAATTAAGCTAAGATCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAGATATTGGATGCTGCAAGGAACACGAATGCAAAAACCATGGGTCCCGTGCCATTACCTACGAAAAAGCGCATCTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAGCGGCTAATCGATATTTTGTACCCTACTGCTCAAACAATTGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGATGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Homology
[Close]
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 139/209 (66.51%), Postives = 162/209 (77.51%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSS---KPKLLPFSASFTSVSKLNPLQFSLSSTRVYAA 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++   +S     + S+S T+V+A 
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAV 60

Query: 61  PEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSY 120
           P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRSY
Sbjct: 61  PDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRSY 120

Query: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 180
           WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+
Sbjct: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRM 180

Query: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 4.7e-63
Identity = 141/212 (66.51%), Postives = 158/212 (74.53%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFT------SVSKLNPLQFSLSSTRV 60
           MA SSLS TI+ SP  L   SS  +KP++   S   +      ++S  +P   S S+ RV
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S  T         G  + V EG +     TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET---------GPESYVEEGSE-----TSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQI+DAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match: RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.1e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 1 

Query: 109 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match: RS10_CYAP7 (30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 1 

Query: 107 KQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match: RR10_PORPU (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 3.3e-32
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 1 

Query: 109 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+SPHV KD+R H
Sbjct: 8   KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR+H+R+IDI  P++QTID+LM+L+LP+GVD+EVKL
Sbjct: 68  FEIRSHRRIIDIHQPSSQTIDALMKLNLPSGVDIEVKL 105

[Close]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match: A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 1.9e-95
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTL   +SS SSKPK  PF AS ++  KL PLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match: W9QQJ9_9ROSA (30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.9e-72
Identity = 152/207 (73.43%), Postives = 166/207 (80.19%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVS-KLNPLQFSLSSTRVYAAPE 60
           M +SS+SAT+IPS +L       SSKPKL  FS  F + S KL  L+ S  STRVYAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 61  VLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+ P       E L+GSGA  +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match: M5WVB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.7e-67
Identity = 146/207 (70.53%), Postives = 163/207 (78.74%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSA-SFTSVSKLNPLQFSLSSTRVYAAPE 60
           MA+SS+SA +IPS  L       SSK  +  F+  S  +  KL  L+ S SSTRVYAAPE
Sbjct: 1   MAVSSMSAILIPSLPLTNSSPFPSSKLNVSSFALPSANNALKLRALRPSQSSTRVYAAPE 60

Query: 61  VLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S  ++ PPPE LE   +        E P TS+L++G D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESQESLVPPPETLEVGSS--------ETPSTSSLNVGGDADKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match: A0A067L5B3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.9e-67
Identity = 149/217 (68.66%), Postives = 161/217 (74.19%), Query Frame = 1 

Query: 1   MAISSLSATIIPS-----------PTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSL 60
           MAISS++ T+IPS           PT     SS SS      FS S  SV  L  L+ S 
Sbjct: 1   MAISSITTTLIPSLATSSSFASKQPTQTKLFSSSSSSSS--SFSNSANSVFSL--LKISS 60

Query: 61  SSTRVYAAPEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQK 120
           S+ RV A PE LDS   +E PPE ++ S     +  D E P + +LSIG D DKLAPKQK
Sbjct: 61  STIRVLAVPETLDSAEPLETPPETVDESDPDTFQIGDSETPSSPSLSIGADADKLAPKQK 120

Query: 121 IRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180
           IRIKLRSYWVPLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF
Sbjct: 121 IRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHF 180

Query: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 EIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213

[Close]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match: A0A0L9VCG1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 1.2e-65
Identity = 143/208 (68.75%), Postives = 158/208 (75.96%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEV 60
           MA+SSLS T +        +SS    P L  FS +   V+   PLQ   SST V+ APEV
Sbjct: 1   MAVSSLSVTPLSLSNSSPSLSSKLKSPSLCLFSGNSLRVTCPKPLQ---SSTVVHVAPEV 60

Query: 61  LDS-PGTIEPPPEILEG-SGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYW 120
           LDS P  ++PPPE L+  S     +  +   P TSA+SIG D D +APKQKIRIKLRSYW
Sbjct: 61  LDSSPDPLDPPPETLDDDSEPTTYQVGELGTPSTSAISIGADADAMAPKQKIRIKLRSYW 120

Query: 121 VPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLI 180
           VPLIEDSCKQILDAAR TNAKTMGPVPLPTK+R+YCVLKSPHVHKDARFHFEIRTHQRLI
Sbjct: 121 VPLIEDSCKQILDAARTTNAKTMGPVPLPTKRRVYCVLKSPHVHKDARFHFEIRTHQRLI 180

Query: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           DILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 205

[Close]
BLAST of Cp4.1LG02g00620 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 243.8 bits (621), Expect = 9.2e-65
Identity = 139/209 (66.51%), Postives = 162/209 (77.51%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSS---KPKLLPFSASFTSVSKLNPLQFSLSSTRVYAA 60
           MA+S++S+ ++PS  +  P SS SS   K  LLP S++   +S     + S+S T+V+A 
Sbjct: 1   MAVSTVSSFLLPSFGI--PSSSPSSTRLKVSLLPSSSTHGGLSSCVLTKPSVSLTKVFAV 60

Query: 61  PEVLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSY 120
           P+ LD      P PEIL+   +        EVP +S++S+  D DK+APKQKIRIKLRSY
Sbjct: 61  PDTLD------PTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRSY 120

Query: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRL 180
           WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+
Sbjct: 121 WVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRM 180

Query: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 IDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of Cp4.1LG02g00620 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-07
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1 

Query: 90  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTK 149
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 150 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]
BLAST of Cp4.1LG02g00620 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 51.2 bits (121), Expect = 8.7e-07
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1 

Query: 90  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTK 149
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 150 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]
BLAST of Cp4.1LG02g00620 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1 

Query: 109 KIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 168
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       K+P       + 
Sbjct: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 81

Query: 169 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 82  RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119

[Close]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match: gi|659126003|ref|XP_008462962.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 358.6 bits (919), Expect = 7.3e-96
Identity = 186/206 (90.29%), Postives = 190/206 (92.23%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTL   +SS SSKPK LPF  S ++  KL PLQFSL STRVYAAPEV
Sbjct: 64  MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 123

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS  TIEPPPEILEGSG A LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 124 LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 183

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 184 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 243

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 244 LYPTAQTIDSLMQLDLPAGVDVEVKL 269

[Close]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match: gi|449465511|ref|XP_004150471.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.8e-95
Identity = 184/206 (89.32%), Postives = 190/206 (92.23%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVSKLNPLQFSLSSTRVYAAPEV 60
           MAISSLSATIIPSPTL   +SS SSKPK  PF AS ++  KL PLQFS  STR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSP TIEPPPEILEGSG + LEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match: gi|1009169482|ref|XP_015865689.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 292.0 bits (746), Expect = 8.3e-76
Identity = 156/207 (75.36%), Postives = 171/207 (82.61%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVS-KLNPLQFSLSSTRVYAAPE 60
           MA+SS+SAT++PS  L        S PKL  FS +  + S KL  L+ S S TRVYAAPE
Sbjct: 1   MAVSSISATLVPSLPLPKSSPFSHSNPKLSSFSLASANCSLKLRALKPSQSFTRVYAAPE 60

Query: 61  VLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S  T++PPPE L+GSG+   E    E+P TS+LS+G D DKLAPKQKIRIKLRSYWV
Sbjct: 61  VLESQDTLQPPPETLDGSGSDASEVGGSEIPSTSSLSVGADADKLAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207

[Close]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match: gi|703069318|ref|XP_010088470.1| (30S ribosomal protein S10 [Morus notabilis])

HSP 1 Score: 279.3 bits (713), Expect = 5.6e-72
Identity = 152/207 (73.43%), Postives = 166/207 (80.19%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSASFTSVS-KLNPLQFSLSSTRVYAAPE 60
           M +SS+SAT+IPS +L       SSKPKL  FS  F + S KL  L+ S  STRVYAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 61  VLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+ P       E L+GSGA  +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match: gi|658028895|ref|XP_008349887.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica])

HSP 1 Score: 274.2 bits (700), Expect = 1.8e-70
Identity = 152/207 (73.43%), Postives = 166/207 (80.19%), Query Frame = 1 

Query: 1   MAISSLSATIIPSPTLLGPISSLSSKPKLLPFSA-SFTSVSKLNPLQFSLSSTRVYAAPE 60
           MA+SS+S  +IPS  L    +S +SKPKL  FS  S  S  K+   + S SSTRVYAAPE
Sbjct: 1   MAVSSMSTILIPSLPLSKSTASPTSKPKLSSFSLPSANSALKVRASRPSQSSTRVYAAPE 60

Query: 61  VLDSPGTIEPPPEILEGSGAAVLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+SP T+ PPPE LE   +        E P TS+LSIG D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESPETLVPPPETLEVGSS--------ETPSTSSLSIGGDGDKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

The following BLAST results are available for this feature:
BLAST of Cp4.1LG02g00620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RR10_ARATH1.6e-6366.5130S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S... [more]
RR10_MESCR4.7e-6366.5130S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS... [more]
RR10_CYAPA5.1e-3366.33Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1[more]
RS10_CYAP73.3e-3262.0030S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1[more]
RR10_PORPU3.3e-3265.3130S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1[more]
BLAST of Cp4.1LG02g00620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LEH6_CUCSA1.9e-9589.32Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1[more]
W9QQJ9_9ROSA3.9e-7273.4330S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1[more]
M5WVB4_PRUPE1.7e-6770.53Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1[more]
A0A067L5B3_JATCU4.9e-6768.66Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1[more]
A0A0L9VCG1_PHAAN1.2e-6568.75Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan09g100300 PE=3 SV=1[more]
BLAST of Cp4.1LG02g00620 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13120.19.2e-6566.51 Ribosomal protein S10p/S20e family protein[more]
AT3G45030.18.7e-0729.66 Ribosomal protein S10p/S20e family protein[more]
AT5G62300.18.7e-0729.66 Ribosomal protein S10p/S20e family protein[more]
AT3G47370.21.1e-0631.31 Ribosomal protein S10p/S20e family protein[more]
BLAST of Cp4.1LG02g00620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659126003|ref|XP_008462962.1|7.3e-9690.29PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo][more]
gi|449465511|ref|XP_004150471.1|2.8e-9589.32PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus][more]
gi|1009169482|ref|XP_015865689.1|8.3e-7675.36PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba][more]
gi|703069318|ref|XP_010088470.1|5.6e-7273.4330S ribosomal protein S10 [Morus notabilis][more]
gi|658028895|ref|XP_008349887.1|1.8e-7073.43PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR027486Ribosomal_S10_dom
IPR018268Ribosomal_S10_CS
IPR001848Ribosomal_S10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0015979 photosynthesis
biological_process GO:0006364 rRNA processing
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG02g00620.1Cp4.1LG02g00620.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 109..122
score: 6.5E-15coord: 165..179
score: 6.5E-15coord: 144..159
score: 6.5
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 107..206
score: 24
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 2..206
score: 1.0
IPR001848Ribosomal protein S10TIGRFAMsTIGR01049TIGR01049coord: 108..205
score: 1.4
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 133..148
scor
IPR027486Ribosomal protein S10 domainGENE3DG3DSA:3.30.70.600coord: 108..206
score: 5.4
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 111..205
score: 4.0
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 111..205
score: 5.5
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 109..206
score: 3.79
NoneNo IPR availablePANTHERPTHR11700:SF937S RIBOSOMAL PROTEIN S10, MITOCHONDRIALcoord: 2..206
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG02g00620Cucsa.281490Cucumber (Gy14) v1cgycpeB0739
Cp4.1LG02g00620CmaCh09G009860Cucurbita maxima (Rimu)cmacpeB046
Cp4.1LG02g00620CmaCh01G010940Cucurbita maxima (Rimu)cmacpeB490
Cp4.1LG02g00620CmoCh01G011410Cucurbita moschata (Rifu)cmocpeB448
Cp4.1LG02g00620CmoCh09G009890Cucurbita moschata (Rifu)cmocpeB021
Cp4.1LG02g00620Cla003284Watermelon (97103) v1cpewmB531
Cp4.1LG02g00620Csa3G769090Cucumber (Chinese Long) v2cpecuB551
Cp4.1LG02g00620MELO3C024899Melon (DHL92) v3.5.1cpemeB498
Cp4.1LG02g00620ClCG09G021040Watermelon (Charleston Gray)cpewcgB478
Cp4.1LG02g00620CSPI03G34540Wild cucumber (PI 183967)cpecpiB553
Cp4.1LG02g00620Lsi02G018570Bottle gourd (USVL1VR-Ls)cpelsiB445
Cp4.1LG02g00620MELO3C024899.2Melon (DHL92) v3.6.1cpemedB595
Cp4.1LG02g00620CsaV3_7G018640Cucumber (Chinese Long) v3cpecucB0733
Cp4.1LG02g00620Bhi09G001447Wax gourdcpewgoB0714
Cp4.1LG02g00620CsGy7G008340Cucumber (Gy14) v2cgybcpeB951
Cp4.1LG02g00620Carg12851Silver-seed gourdcarcpeB1254
Cp4.1LG02g00620Carg22394Silver-seed gourdcarcpeB1232
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG02g00620Cp4.1LG06g08510Cucurbita pepo (Zucchini)cpecpeB460
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG02g00620Cucurbita pepo (Zucchini)cpecpeB240
Cp4.1LG02g00620Wild cucumber (PI 183967)cpecpiB592
Cp4.1LG02g00620Cucumber (Chinese Long) v2cpecuB586
Cp4.1LG02g00620Cucumber (Chinese Long) v2cpecuB591