CsaV3_7G018640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_7G018640
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
Description30S ribosomal protein S10
Locationchr7 : 8558744 .. 8560672 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGTTTGTCATCATTTTCTACGGAATGGACCAAAATGTTATAATTTCTCTAGGTTTTGTAATGGGTGTAAGCATTTTTTTTTCTGGGTTCTTTTTCCCTCTTTTTTTAAAACTTTCATTTCGTTTTCAATTGCATTGGAAATTGGACAATGTTTCTGTTTTTTTTTTTTTTTTTTTTTCTTTTCTAATGTTGTGTTTATATTTAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTTTTCAGATTATGTTTTACTCCAGCTTCTTGTGGCTTTCTGAATATATAAAATGTTATGCTGAGATACTTCTGATATCTAAACTGAACTCTGGAATATATATTGGTTCTGACGAGTTAAAGAAAGAATGGCCAGAAAATAAACAATGGAATTATTTAATGAGATTATATCAGCATCTTGATTTGTCATCCTGCTAAGTTGATTGGGTAAAGTCATGAGTGAATGGAAAATTTTCATTTTATGTATCAGTTTTTAGTTGTAGTGTTGCCTTGAAAGCTTATAGCATGCTTAGGAGTGATTCTTAAATGGTTTAAAATCATTTTTTTTTCATTTTCAAAACCACTCCAAAAATGCTTTTAATAATTCAAAATCAATTTTAGTAGTATAAGAGCTGAGCCTAAGACTCAGTATATAATTAAACATTGGATTGATTTTGGTGATTAAAGGTATATTTTAAAGTGATTTTGAATAATGATAAAATTGATTCTAACTATTTCAAAATCACTCACAAACATGCACAAAATAAGGTGATTAATCTAATGCAATGTTGAAAGTTTCTAATGTAGTGGAATTGAGTGGAATGTGGCAGTTCCATATTCCTTTGTATCCTGAAACAACCTCCTGAACTGGTTAGGGCATAGTTCTTCAATTGACAATTGCTCCATTGGCTGAATTTCTGTGACATATTGGCCCATTAGGATGATAGATATATGCATACAAATTGGTACAAAATTGAGCTTTTATTGAAATAAACAAAAGAATAGAAGGGCATACAAGTTTAGGACTCAAATCCAAAAGAACAAGAACAAGTTCATAGGTAAAATAGGCCTAGTGAGCAAAGCTCCAGAGATGCCAAGAACCTAGCCACTTCCGTAAATGGCTACCAAGATAGTCATTTTGTACCTTTATATTTACTAAATGCCGATGTAGTTTTCAGTAAGTCTCAATGCTGTGTTATTCGATTTGTTTGATTATCTGTGGTAGGAGGTGTGTCTAGGGACTTATGTCAGCTAATTGGTTTTGTAATAGATAGTCTTCATCTTCATCTTATGTCTGTATGATTTTAATGAACTAAAGATGTTTGTGGTTTCAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

mRNA sequence

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Homology
[Close]
BLAST of CsaV3_7G018640 vs. NCBI nr
Match: XP_004150471.1 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651997.1 PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >KGN59092.1 hypothetical protein Csa_3G769090 [Cucumis sativus])

HSP 1 Score: 403.3 bits (1035), Expect = 5.0e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. NCBI nr
Match: XP_008462962.2 (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 390.2 bits (1001), Expect = 4.4e-105
Identity = 200/206 (97.09%), Postives = 202/206 (98.06%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKF PFP SSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. NCBI nr
Match: XP_022935934.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 357.1 bits (915), Expect = 4.1e-95
Identity = 184/206 (89.32%), Postives = 189/206 (91.75%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSP+LF  LSS   KP+F PF  SSSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS D  EPPPEILE SG +TLEGEDFE PGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. NCBI nr
Match: XP_023536588.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_023536589.1 30S ribosomal protein S10, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 354.0 bits (907), Expect = 3.5e-94
Identity = 183/206 (88.83%), Postives = 188/206 (91.26%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATII SP+LF  LSS   KP+F PF  SSSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIASPSLFVPLSSLHPKPRFLPFSGSSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS D  EPPPEILE SG +TLEGEDFE PGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGTATLEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. NCBI nr
Match: XP_022976281.1 (30S ribosomal protein S10, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 350.9 bits (899), Expect = 3.0e-93
Identity = 182/206 (88.35%), Postives = 186/206 (90.29%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSP+LF  LSS   KP F PF   SSTALKLKPL FS PS+R+YAAPEV
Sbjct: 1   MAISSLSATIIPSPSLFIPLSSLHPKPTFLPFSGFSSTALKLKPLHFSLPSSRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS D  EPPPEILE SG + LEGEDFE PGTSA SIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDANEPPPEILEDSGAAILEGEDFEAPGTSAFSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. TAIR10
Match: AT3G13120.1 (Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 236.1 bits (601), Expect = 1.9e-62
Identity = 136/206 (66.02%), Postives = 157/206 (76.21%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MA+S++S+ ++PS  +  S S  S++ K    P SSST   L     + PS  L    +V
Sbjct: 1   MAVSTVSSFLLPSFGI-PSSSPSSTRLKVSLLP-SSSTHGGLSSCVLTKPSVSL---TKV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
              PDT++P PEIL+            EVP +S++S+  D DK+APKQKIRIKLRSYWVP
Sbjct: 61  FAVPDTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match: sp|Q9M4Y3|RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=3544 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 8.3e-63
Identity = 141/212 (66.51%), Postives = 157/212 (74.06%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPST------RL 60
           MA SSLS TI+ SP   ++ SS  +KP+       SS +   + L  S PS+      R+
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGS-------------ETSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match: sp|Q9LK61|RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS10 PE=2 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 3.5e-61
Identity = 136/206 (66.02%), Postives = 157/206 (76.21%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MA+S++S+ ++PS  +  S S  S++ K    P SSST   L     + PS  L    +V
Sbjct: 1   MAVSTVSSFLLPSFGI-PSSSPSSTRLKVSLLP-SSSTHGGLSSCVLTKPSVSL---TKV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
              PDT++P PEIL+            EVP +S++S+  D DK+APKQKIRIKLRSYWVP
Sbjct: 61  FAVPDTLDPTPEILDEPA--------SEVPSSSSISV--DADKMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match: sp|P82162|RR10_SPIOL (30S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPS10 PE=1 SV=2)

HSP 1 Score: 221.5 bits (563), Expect = 8.8e-57
Identity = 131/211 (62.09%), Postives = 146/211 (69.19%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTR-----LY 60
           MA SS+SA ++ SP    + SS S+K  F    + +        LQ     +       +
Sbjct: 1   MATSSISAALL-SPLTLRNASSSSTKQDFSTLSSLNLRRTLTPTLQSGHTLSNSSNFATF 60

Query: 61  AAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLR 120
           AAP  L          E+LE S  S  +G +     TS +SI  D D++APKQKIRIKLR
Sbjct: 61  AAPGAL----------EVLETSPDSFEDGSE-----TSKISIAADSDQMAPKQKIRIKLR 120

Query: 121 SYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180
           SYWVPLIEDSCKQIMDAAR TNAK MGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ
Sbjct: 121 SYWVPLIEDSCKQIMDAARTTNAKIMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQ 180

Query: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 RLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 195

[Close]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match: sp|P17009|RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 5.2e-33
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 0 

Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match: sp|B7K833|RS10_CYAP7 (30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) OX=65393 GN=rpsJ PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.0e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 0 

Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match: tr|A0A0A0LEH6|A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 403.3 bits (1035), Expect = 3.3e-109
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match: tr|A0A1S3CI46|A0A1S3CI46_CUCME (30S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224 PE=3 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 2.9e-105
Identity = 200/206 (97.09%), Postives = 202/206 (98.06%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKF PFP SSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match: tr|A0A2I4F0D4|A0A2I4F0D4_9ROSI (30S ribosomal protein S10, chloroplastic OS=Juglans regia OX=51240 GN=LOC108994383 PE=3 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 1.6e-74
Identity = 152/206 (73.79%), Postives = 171/206 (83.01%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISS SA+++PS  L  S S  +SKP     P  ++  LKL+  + S  STR+YAAPEV
Sbjct: 1   MAISSFSASLVPSIPLSNS-SPFNSKPALSYVPFYAAKTLKLQAFKPSLSSTRVYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           L+SP+ ++PPPEIL+GS  ++ E    E P TS+LSIG D DK+APKQKIRIKLRSYWVP
Sbjct: 61  LESPEALDPPPEILDGSESTSFEVGGSETPSTSSLSIGADSDKMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 205

[Close]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match: tr|A0A2P5F8E6|A0A2P5F8E6_9ROSA (Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100900 PE=3 SV=1)

HSP 1 Score: 283.5 bits (724), Expect = 3.8e-73
Identity = 152/208 (73.08%), Postives = 169/208 (81.25%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPA--SSSTALKLKPLQFSFPSTRLYAAP 60
           MA+SS+SAT+IPS +L  S    SSKPK  PF    ++ ++ KL+ L+ S  STR+YAAP
Sbjct: 1   MAVSSVSATLIPSLSLSISSPFSSSKPKISPFSLHFANCSSAKLRALKPSQSSTRVYAAP 60

Query: 61  EVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYW 120
           EVL      EPPPE L+GSG    E    E P TS+LS+G D DK+ PKQKIRIKLRSYW
Sbjct: 61  EVL------EPPPETLDGSGSEAFEVGGSETPSTSSLSVGADADKVVPKQKIRIKLRSYW 120

Query: 121 VPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLI 180
           VPLIEDSCKQIMDAARNTNAKTMGPVPLPTK+RIYCVLKSPHVHKDARFHFEIRTHQRLI
Sbjct: 121 VPLIEDSCKQIMDAARNTNAKTMGPVPLPTKRRIYCVLKSPHVHKDARFHFEIRTHQRLI 180

Query: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           DILYPTAQTIDSLMQLD+PAGVDVEVKL
Sbjct: 181 DILYPTAQTIDSLMQLDIPAGVDVEVKL 202

[Close]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match: tr|A0A2P5B3T8|A0A2P5B3T8_PARAD (Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273780 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.9e-72
Identity = 151/208 (72.60%), Postives = 168/208 (80.77%), Query Frame = 0 

Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPA--SSSTALKLKPLQFSFPSTRLYAAP 60
           MA+SS+ AT+IPS +L +S    SSKPK  PF    ++ ++ KL+ L+ S  STR+YAAP
Sbjct: 1   MAVSSVCATLIPSLSLSSSSPFSSSKPKISPFSLHFANCSSAKLRALKPSQSSTRVYAAP 60

Query: 61  EVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYW 120
           EVL      EPPPE L GSG    E    E P TS+LS+G D DK+ PKQKIRIKLRSYW
Sbjct: 61  EVL------EPPPETLAGSGSEAFEVGGSETPSTSSLSVGADADKVVPKQKIRIKLRSYW 120

Query: 121 VPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLI 180
           VPLIEDSCKQIMDAARNTNAKTMGPVPLPTK+RIYCVLKSPHVHKDARFHFEIRTHQRLI
Sbjct: 121 VPLIEDSCKQIMDAARNTNAKTMGPVPLPTKRRIYCVLKSPHVHKDARFHFEIRTHQRLI 180

Query: 181 DILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           DILYPTAQTIDSLMQLD+PAGVDVEVKL
Sbjct: 181 DILYPTAQTIDSLMQLDIPAGVDVEVKL 202

The following BLAST results are available for this feature:
BLAST of CsaV3_7G018640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004150471.15.0e-109100.00PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus] >XP_011651... [more]
XP_008462962.24.4e-10597.09PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo][more]
XP_022935934.14.1e-9589.3230S ribosomal protein S10, chloroplastic-like [Cucurbita moschata][more]
XP_023536588.13.5e-9488.8330S ribosomal protein S10, chloroplastic-like [Cucurbita pepo subsp. pepo] >XP_0... [more]
XP_022976281.13.0e-9388.3530S ribosomal protein S10, chloroplastic-like [Cucurbita maxima][more]
BLAST of CsaV3_7G018640 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G13120.11.9e-6266.02Ribosomal protein S10p/S20e family protein[more]
BLAST of CsaV3_7G018640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9M4Y3|RR10_MESCR8.3e-6366.5130S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum OX=354... [more]
sp|Q9LK61|RR10_ARATH3.5e-6166.0230S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPS1... [more]
sp|P82162|RR10_SPIOL8.8e-5762.0930S ribosomal protein S10 alpha, chloroplastic OS=Spinacia oleracea OX=3562 GN=R... [more]
sp|P17009|RR10_CYAPA5.2e-3366.33Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa OX=2762 GN=rps10 PE=3 ... [more]
sp|B7K833|RS10_CYAP72.0e-3262.0030S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) OX=65393 GN=rpsJ P... [more]
BLAST of CsaV3_7G018640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LEH6|A0A0A0LEH6_CUCSA3.3e-109100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G769090 PE=3 SV=1[more]
tr|A0A1S3CI46|A0A1S3CI46_CUCME2.9e-10597.0930S ribosomal protein S10, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501224... [more]
tr|A0A2I4F0D4|A0A2I4F0D4_9ROSI1.6e-7473.7930S ribosomal protein S10, chloroplastic OS=Juglans regia OX=51240 GN=LOC1089943... [more]
tr|A0A2P5F8E6|A0A2P5F8E6_9ROSA3.8e-7373.08Ribosomal protein OS=Trema orientalis OX=63057 GN=TorRG33x02_100900 PE=3 SV=1[more]
tr|A0A2P5B3T8|A0A2P5B3T8_PARAD1.9e-7272.60Ribosomal protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_273780 PE=3 SV=... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR018268Ribosomal_S10_CS
IPR036838Ribosomal_S10_dom_sf
IPR027486Ribosomal_S10_dom
IPR001848Ribosomal_S10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0044763 single-organism cellular process
biological_process GO:0044711 single-organism biosynthetic process
biological_process GO:0009657 plastid organization
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0015979 photosynthesis
biological_process GO:0006412 translation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009902 chloroplast relocation
biological_process GO:0015995 chlorophyll biosynthetic process
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_7G018640.1CsaV3_7G018640.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 109..122
score: 42.58
coord: 165..179
score: 52.82
coord: 144..159
score: 53.37
IPR001848Ribosomal protein S10TIGRFAMTIGR01049TIGR01049coord: 108..205
e-value: 1.2E-39
score: 132.6
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 36..206
IPR001848Ribosomal protein S10HAMAPMF_00508Ribosomal_S10coord: 107..206
score: 24.177
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 111..205
e-value: 3.9E-51
score: 185.9
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 111..205
e-value: 3.0E-33
score: 113.9
IPR036838Ribosomal protein S10 domain superfamilyGENE3DG3DSA:3.30.70.600coord: 95..206
e-value: 1.3E-36
score: 127.1
IPR036838Ribosomal protein S10 domain superfamilySUPERFAMILYSSF54999Ribosomal protein S10coord: 109..206
NoneNo IPR availablePANTHERPTHR11700:SF1730S RIBOSOMAL PROTEIN S10, CHLOROPLASTICcoord: 36..206
IPR018268Ribosomal protein S10, conserved sitePROSITEPS00361RIBOSOMAL_S10coord: 133..148