Cucsa.281490 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.281490
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	30S ribosomal protein S10
Location	scaffold02639 : 94047 .. 97900 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAACGCTGCACCAAAAATTATCCATTTCTTTCTGCTTCCGCCATCGATATTCAAAGCAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGTTTGTCATCATTTTCTACGGAATGGACCAAAATGTTATAATTTCTCTAGGTTTTGTAATGGGTGTAAGCATTTTTTTTTCTGGGTTCTTTTTCCCTCTTTTTTTAAAACTTTCATTTCGTTTTCAATTGCATTGGAAATTGGACAATGTTTCTTGTTTTTTTTTTTTTTTTCTTTTTCTAATGTTGTGTTTATATTTAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGGTAAATTTTATGTTTTTCAGATTATGTTTTACTCCAGCTTCTTGTGGCTTTCTGAATATATAAAATGTTATGCTGAGATACTTCTGATATCTAAACTGAACTCTGGAATATATATTGGTTCTGACGAGTTAAAGAAAGAATGGCCAGAAAATAAACAATGGAATTATTTAATGAGATTATATCAGCATCTTGATTTGTCATCCTGCTAAGTTGATTGGGTAAAGTCATGAGTGAATGGAAAATTTTCATTTTATGTATCAGTTTTTAGTTGTAGTGTTGCCTTGAAAGCTTATAGCATGCTTAGGAGTGATTCTTAAATGGTTTAAAATCATTTTTTTTTCATTTTCAAAACCACTCCAAAAATGCTTTTAATAATTCAAAATCAATTTTAGTAGTATAAGAGCTGAGCCTAAGACTCAGTATATAATTAAACATTGGATTGATTTTGGTGATTAAAGGTATATTTTAAAGTGATTTTGAATAATGATAAAATTGATTCTAACTATTTCAAAATCACTCACAAACATGCACAAAATAAGGTGATTAATCTAATGCAATGTTGAAAGTTTCTAATGTAGTGGAATTGAGTGGAATGTGGCAGTTCCATATTCCTTTGTATCCTGAAACAACCTCCTGAACTGGTTAGGGCATAGTTCTTCAATTGACAATTGCTCCACTGGCTGAATTTCTGTGACATATTGGCCCATTAGGATGATAGATATATGCATACAAATTGGTACAAAATTGAGCTTTTATTGAAATAAACAAAAGAATAGAAGGGCATACAAGTTTAGGACTCAAATCCAAAAGAACAAGAACAAGTTCATAGGTAAAATAGGCCTAGTGAGCAAAGCTCCAGAGATGCCAAGAACCTAGCCACTTCCGTAAATGGCTACCAAGATAGTCATTTTGTACCTTTATATTTACTAAATGCCGATGTAGTTTTCAGTAAGTCTCAATGCTGTGTTATTCGATTTGTTTGATTATCTGTGGTAGGAGGTGTGTCTAGGGACTTATGTCAGCTAATTGGTTTTGTAATAGATAGTCTTCATCTTCATCTTATGTCTGTATGATTTTAATGAACTAAAGATGTTTGTGGTTTCAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGAAGAGAACAGCTTCACCCAGGTAAAGAATTTAGTTTCCATAAGTTCATTATGTATGGTGGTATTCCTTTTACTGGTACTATGTTAAATTGTTGTTTGCATCAAAACAAGTTTATTGTTCCTTTGGGAATATCCGATAAAATTGAAACGATATAGAGAAGATTAGCATGGCCTTTGCGCAAGGATGACATCAAAACAAGTCGATTATATATTCAACATTCCTTTTCTGTTTCTTTAGTATTTTCTTCAAGAATTCAACTATTATCAGTTTTATCACACTAAAATTTGCATAATCCATAAGTTTCAACTGTTATTAGTTTTGCAATATGTTGGTGATATATAATTAAATTTGCCTTCAACCACCAGCTTAAGTTTTTGGGTGAATTGGTGATTTAATATGATATCAGAGCAGGTGGTCCAGAGAGGTCGTGTGCTCAAGCCCCCCGCATTGTCGTTTCCTCTCCAATTAAAACCAATTTCCACTTGTTGGGCATTTAATACAATCATTTTTAAATTTGGCTATATCAACTAATTGCTGTGGTGGTAGTGCAAGGTGGCTGAGAAATTTCTGTTTTTAGTTTATAGATGTATGTTTGAGAGGAAATCGAACCCTGTGAAGGGTCTATGAGTCTGATGTACACTTTTTTTCTCATGGAAATGTTTTATTTGGTCGTGTAGTGGAGATCTAGATTGAAACAAATACCTATATGTCAACAAGTGGAATCTGGAATGAGTGTGACAATGTAATATTTTTGAATTTGTACCCAAGCAAAATGAATAAGTCCTTGAAAGTATTAGGGATTGTGCAAGTAGAAAGGAGGGTTGTATTATCCTCCTGCAATAAAGAAACAGGAAAGTTGATACTTACTGCTTTGGTTTGAAAAACCGTTCAGTTTGGTGGTGTCAGATTGAAAATATTTATTAAAAAAAACAGCAAAACTTCTCATTACAGTTTGGGTTAGGCAAAATCATAAATTGAAAAAACCTAAATGTCAAAAGAAGGCTCATGTGAGTCATGTTCCCACCTCCTCAACCTGCCATACCGCACATGTAATCAGCTATCCAGCAGCCAGACCGACCAAACTGCGCTTCAAGTGCTTCAGCTGGTGTAATTTCTCAATTAGCATGGTTTGAAGTTGGTTTTCATGTTTTCTTTCATCGATTAACCAGTTCAACTCTGGTTTTATGAAAATTGGAGCCGAATCATACGCTTCACACTATTATCTAGTAGAGGGAAATTAACACTTGGTGTTCGTAGGTTCTAAAGCAAACTGGTATCTTTCTCAAACCTTTTACCCATTTCATTTCCATCTGTTGCTAAGTAATTTGTATGGTTTCTCCAAATCAATGCTATCTCCTCCCTACTTTCCTGTTTACTAAATTGTTGTCGTGAATGAAATTGATTGTGCTTGTTTTGCACTTCGTTGATGCCGATAATCATCACATAGTCATATTGATTTTGTCCTGATTCCTGATTTCTTATATGGTTATTTACACGCATTTCAACGTTAGTTTGCCCCATGTTCATGCTTTCTTTTAACACTTTTGGTATGGGTTTTTGCTTGTTAGGTAATGGGTTTCCGAGGATGTAACTACTTAAATATATCAGAGCCTGAAATTGTGTAGACGATAATGGTGGAACGGGTCATAGAGGCGATAGCTGGTGCTTACAGTATGCTTTTCTTTGCTTGAATTTATATGCCAATTTGGAAATGGGAGCAATGGAAATATAGGATTGTTAAAATCACATTTTCCTTTTTGTTAGTTCTTTGCTGCTTTGCAGTGTCTTGTCAACCATTTGTATTAACGGTGTTTTGTATTTTTTTGGGTACCTAATGGAGCAATGAAAATAGTTGAATTCAATGC

mRNA sequence

ATAACGCTGCACCAAAAATTATCCATTTCTTTCTGCTTCCGCCATCGATATTCAAAGCAACTTCCATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGAAGAGAACAGCTTCACCCAGGTAATGGGTTTCCGAGGATGTAACTACTTAAATATATCAGAGCCTGAAATTGTGTAGACGATAATGGTGGAACGGGTCATAGAGGCGATAGCTGGTGCTTACAGTATGCTTTTCTTTGCTTGAATTTATATGCCAATTTGGAAATGGGAGCAATGGAAATATAGGATTGTTAAAATCACATTTTCCTTTTTGTTAGTTCTTTGCTGCTTTGCAGTGTCTTGTCAACCATTTGTATTAACGGTGTTTTGTATTTTTTTGGGTACCTAATGGAGCAATGAAAATAGTTGAATTCAATGC

Coding sequence (CDS)

ATGGCTATTTCTTCACTCTCTGCTACTATTATTCCATCTCCTACTCTTTTTACTTCTTTATCTTCCCATTCTTCTAAACCAAAATTTCCCCCCTTCCCTGCTTCATCTTCTACTGCTTTAAAGCTCAAACCCCTTCAATTTTCCTTCCCATCCACAAGGCTTTATGCTGCTCCTGAAGTTCTAGACTCCCCCGATACCATTGAACCACCTCCCGAAATCTTGGAAGGATCTGGAGTTTCCACTCTCGAGGGTGAAGATTTTGAGGTTCCTGGGACTTCAGCTCTCAGCATTGGTGAGGATGTGGATAAGCTGGCGCCGAAGCAGAAAATTAGAATTAAACTAAGGTCTTACTGGGTTCCACTCATTGAAGATTCTTGCAAGCAAATAATGGATGCTGCAAGGAATACAAATGCAAAAACCATGGGTCCTGTGCCATTACCTACAAAAAAGCGCATTTATTGTGTTCTTAAATCCCCTCATGTTCATAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATTGATATTTTGTACCCTACTGCCCAAACGATCGATTCTTTGATGCAACTCGACCTTCCAGCTGGTGTTGACGTGGAGGTCAAGCTATGA

Protein sequence

MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL*

Homology

[Close]

BLAST of Cucsa.281490 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-65
Identity = 141/212 (66.51%), Postives = 157/212 (74.06%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPST------RL 60
           MA SSLS TI+ SP   ++ SS  +KP+       SS +   + L  S PS+      R+
Sbjct: 1   MATSSLS-TIVFSPLALSNSSSFPNKPQVSNLSLHSSLSNLRRTLSHSSPSSSSSSNVRV 60

Query: 61  YAAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKL 120
           +AAPEVL+S +T  P   + EGS              TSAL IG D D++APKQKIRIKL
Sbjct: 61  FAAPEVLESQET-GPESYVEEGSE-------------TSALGIGADSDQMAPKQKIRIKL 120

Query: 121 RSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTH 180
           RSYWVPLIEDSCKQIMDAAR TNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTH
Sbjct: 121 RSYWVPLIEDSCKQIMDAARTTNAKTMGPVPLPTKKRIFCVLKSPHVHKDARFHFEIRTH 180

Query: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 QRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

[Close]

BLAST of Cucsa.281490 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 1.6e-63
Identity = 136/206 (66.02%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MA+S++S+ ++PS  + +S S  S++ K    P SSST   L     + PS  L    +V
Sbjct: 1   MAVSTVSSFLLPSFGIPSS-SPSSTRLKVSLLP-SSSTHGGLSSCVLTKPSVSL---TKV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
              PDT++P PEIL+            EVP +S++S+  D DK+APKQKIRIKLRSYWVP
Sbjct: 61  FAVPDTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Cucsa.281490 vs. Swiss-Prot
Match: RR10_CYAPA (Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-32
Identity = 65/98 (66.33%), Postives = 86/98 (87.76%), Query Frame = 1


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRI+LRSY   L+E+SC+QI++AA+ T+A  +GP+PLPTKK+IYCVL+SPHV KD+R H
Sbjct: 8   KIRIQLRSYDSSLLENSCEQIIEAAKRTDATAVGPIPLPTKKKIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR H+R+ID+  P+++TID+L +LDLPAGVDVEVKL
Sbjct: 68  FEIRVHRRIIDLYLPSSKTIDTLTRLDLPAGVDVEVKL 105

[Close]

BLAST of Cucsa.281490 vs. Swiss-Prot
Match: RS10_CYAP7 (30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 5.7e-32
Identity = 62/100 (62.00%), Postives = 86/100 (86.00%), Query Frame = 1


Query: 107 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 166
           +QKIRI+L+++   L++ SC++I+D A  TNA  +GP+PLPTK+R+YCVL+SPHV KD+R
Sbjct: 6   QQKIRIRLKAFDRRLLDTSCEKIVDTANRTNATAIGPIPLPTKRRVYCVLRSPHVDKDSR 65

Query: 167 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            HFE RTH+R+IDI  P+++TID+LM+LDLPAGVD+EVKL
Sbjct: 66  EHFETRTHRRIIDIYQPSSKTIDALMKLDLPAGVDIEVKL 105

[Close]

BLAST of Cucsa.281490 vs. Swiss-Prot
Match: RR10_PORPU (30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.4e-32
Identity = 64/98 (65.31%), Postives = 84/98 (85.71%), Query Frame = 1


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFH 168
           KIRIKL++Y   L+  SCK+I+D A  TNA  +GP+PLPTK+RIYCVL+SPHV KD+R H
Sbjct: 8   KIRIKLKAYNSSLLNTSCKKIVDTAERTNAIAVGPIPLPTKRRIYCVLRSPHVDKDSREH 67

Query: 169 FEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FEIR+H+R+IDI  P++QTID+LM+L+LP+GVD+EVKL
Sbjct: 68  FEIRSHRRIIDIHQPSSQTIDALMKLNLPSGVDIEVKL 105

[Close]

BLAST of Cucsa.281490 vs. TrEMBL
Match: A0A0A0LEH6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1)

HSP 1 Score: 411.0 bits (1055), Expect = 8.6e-112
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Cucsa.281490 vs. TrEMBL
Match: W9QQJ9_9ROSA (30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 7.1e-74
Identity = 149/207 (71.98%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPAS-SSTALKLKPLQFSFPSTRLYAAPE 60
           M +SS+SAT+IPS +L  S    SSKPK   F    ++ + KL+ L+ S PSTR+YAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 61  VLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+ P       E L+GSG   +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

[Close]

BLAST of Cucsa.281490 vs. TrEMBL
Match: M5WVB4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.5e-71
Identity = 149/207 (71.98%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPA-SSSTALKLKPLQFSFPSTRLYAAPE 60
           MA+SS+SA +IPS  L  S    SSK     F   S++ ALKL+ L+ S  STR+YAAPE
Sbjct: 1   MAVSSMSAILIPSLPLTNSSPFPSSKLNVSSFALPSANNALKLRALRPSQSSTRVYAAPE 60

Query: 61  VLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S +++ PPPE        TLE    E P TS+L++G D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESQESLVPPPE--------TLEVGSSETPSTSSLNVGGDADKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]

BLAST of Cucsa.281490 vs. TrEMBL
Match: I3S9B7_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 2.5e-71
Identity = 148/206 (71.84%), Postives = 162/206 (78.64%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MA+SS SA I+PS     SLS+ S KPKFP     S   L+L  L+    ST L AAPEV
Sbjct: 1   MAVSSFSAAIVPS----LSLSNSSPKPKFPSLSFLSGNTLRLTTLKPLHSSTVLKAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS +T+E      + S  STL+  D   P TS++SIG D D +APKQKIRIKLRSYWVP
Sbjct: 61  LDSTETLE------DDSESSTLQVGDLGTPSTSSISIGGDADAMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI++AARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQILEAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 196

[Close]

BLAST of Cucsa.281490 vs. TrEMBL
Match: A0A067L5B3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 1.1e-69
Identity = 149/220 (67.73%), Postives = 166/220 (75.45%), Query Frame = 1


Query: 1   MAISSLSATIIPS-----------PT---LFTSLSSHSSKPKFPPFPASSSTALKLKPLQ 60
           MAISS++ T+IPS           PT   LF+S SS SS      F  S+++   L  L+
Sbjct: 1   MAISSITTTLIPSLATSSSFASKQPTQTKLFSSSSSSSSS-----FSNSANSVFSL--LK 60

Query: 61  FSFPSTRLYAAPEVLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAP 120
            S  + R+ A PE LDS + +E PPE ++ S   T +  D E P + +LSIG D DKLAP
Sbjct: 61  ISSSTIRVLAVPETLDSAEPLETPPETVDESDPDTFQIGDSETPSSPSLSIGADADKLAP 120

Query: 121 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 180
           KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR
Sbjct: 121 KQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDAR 180

Query: 181 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 FHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213

[Close]

BLAST of Cucsa.281490 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 243.8 bits (621), Expect = 9.2e-65
Identity = 136/206 (66.02%), Postives = 158/206 (76.70%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MA+S++S+ ++PS  + +S S  S++ K    P SSST   L     + PS  L    +V
Sbjct: 1   MAVSTVSSFLLPSFGIPSS-SPSSTRLKVSLLP-SSSTHGGLSSCVLTKPSVSL---TKV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
              PDT++P PEIL+            EVP +S++S+  D DK+APKQKIRIKLRSYWVP
Sbjct: 61  FAVPDTLDPTPEILDEPAS--------EVPSSSSISV--DADKMAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQR+IDI
Sbjct: 121 LIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRMIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 191

[Close]

BLAST of Cucsa.281490 vs. TAIR10
Match: AT3G45030.1 (AT3G45030.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1


Query: 90  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTK 149
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 150 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]

BLAST of Cucsa.281490 vs. TAIR10
Match: AT5G62300.1 (AT5G62300.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.0e-06
Identity = 35/118 (29.66%), Postives = 57/118 (48.31%), Query Frame = 1


Query: 90  PGTSALSIGEDVDKLAPKQKIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTK 149
           PG + L      + L    KIRI L S  V  +E  C  ++  A++   +  GPV +PTK
Sbjct: 10  PGKAGLE-----EPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTK 69

Query: 150 KRIYCVLKSPHVHKDARF-HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
                  K+P       +  FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 70  VLKITTRKAPCGEGTNTWDRFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 121

[Close]

BLAST of Cucsa.281490 vs. TAIR10
Match: AT3G47370.2 (AT3G47370.2 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 49.7 bits (117), Expect = 2.6e-06
Identity = 31/99 (31.31%), Postives = 51/99 (51.52%), Query Frame = 1


Query: 109 KIRIKLRSYWVPLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF- 168
           KIRI L S  V  +E  C  ++  A++   +  GPV +PTK       K+P       + 
Sbjct: 22  KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLKITTRKAPCGEGTNTWD 81

Query: 169 HFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 207
            FE+R H+R+ID L+ +   +  +  + +  GV+VEV +
Sbjct: 82  RFELRVHKRVID-LFSSPDVVKQITSITIEPGVEVEVTI 119

[Close]

BLAST of Cucsa.281490 vs. NCBI nr
Match: gi|449465511|ref|XP_004150471.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus])

HSP 1 Score: 411.0 bits (1055), Expect = 1.2e-111
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV
Sbjct: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 206

[Close]

BLAST of Cucsa.281490 vs. NCBI nr
Match: gi|659126003|ref|XP_008462962.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 1.1e-107
Identity = 200/206 (97.09%), Postives = 202/206 (98.06%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPASSSTALKLKPLQFSFPSTRLYAAPEV 60
           MAISSLSATIIPSPTLFTSLSSHSSKPKF PFP SSSTALKLKPLQFS PSTR+YAAPEV
Sbjct: 64  MAISSLSATIIPSPTLFTSLSSHSSKPKFLPFPGSSSTALKLKPLQFSLPSTRVYAAPEV 123

Query: 61  LDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 120
           LDS DTIEPPPEILEGSGV+TLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP
Sbjct: 124 LDSSDTIEPPPEILEGSGVATLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWVP 183

Query: 121 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 180
           LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI
Sbjct: 184 LIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLIDI 243

Query: 181 LYPTAQTIDSLMQLDLPAGVDVEVKL 207
           LYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 244 LYPTAQTIDSLMQLDLPAGVDVEVKL 269

[Close]

BLAST of Cucsa.281490 vs. NCBI nr
Match: gi|1009169482|ref|XP_015865689.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba])

HSP 1 Score: 302.0 bits (772), Expect = 8.1e-79
Identity = 155/207 (74.88%), Postives = 173/207 (83.57%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFP-ASSSTALKLKPLQFSFPSTRLYAAPE 60
           MA+SS+SAT++PS  L  S     S PK   F  AS++ +LKL+ L+ S   TR+YAAPE
Sbjct: 1   MAVSSISATLVPSLPLPKSSPFSHSNPKLSSFSLASANCSLKLRALKPSQSFTRVYAAPE 60

Query: 61  VLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+S DT++PPPE L+GSG    E    E+P TS+LS+G D DKLAPKQKIRIKLRSYWV
Sbjct: 61  VLESQDTLQPPPETLDGSGSDASEVGGSEIPSTSSLSVGADADKLAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQI+DAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQILDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207

[Close]

BLAST of Cucsa.281490 vs. NCBI nr
Match: gi|658028895|ref|XP_008349887.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica])

HSP 1 Score: 285.8 bits (730), Expect = 6.0e-74
Identity = 152/207 (73.43%), Postives = 170/207 (82.13%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPA-SSSTALKLKPLQFSFPSTRLYAAPE 60
           MA+SS+S  +IPS  L  S +S +SKPK   F   S+++ALK++  + S  STR+YAAPE
Sbjct: 1   MAVSSMSTILIPSLPLSKSTASPTSKPKLSSFSLPSANSALKVRASRPSQSSTRVYAAPE 60

Query: 61  VLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+SP+T+ PPPE        TLE    E P TS+LSIG D DK +PKQKIRIKLRSY+V
Sbjct: 61  VLESPETLVPPPE--------TLEVGSSETPSTSSLSIGGDGDKASPKQKIRIKLRSYFV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 199

[Close]

BLAST of Cucsa.281490 vs. NCBI nr
Match: gi|703069318|ref|XP_010088470.1| (30S ribosomal protein S10 [Morus notabilis])

HSP 1 Score: 285.0 bits (728), Expect = 1.0e-73
Identity = 149/207 (71.98%), Postives = 166/207 (80.19%), Query Frame = 1


Query: 1   MAISSLSATIIPSPTLFTSLSSHSSKPKFPPFPAS-SSTALKLKPLQFSFPSTRLYAAPE 60
           M +SS+SAT+IPS +L  S    SSKPK   F    ++ + KL+ L+ S PSTR+YAAPE
Sbjct: 1   MTVSSVSATLIPSLSLSNSSPFSSSKPKLSAFSLQFANCSPKLRALKPSQPSTRVYAAPE 60

Query: 61  VLDSPDTIEPPPEILEGSGVSTLEGEDFEVPGTSALSIGEDVDKLAPKQKIRIKLRSYWV 120
           VL+ P       E L+GSG   +E  D E P TS+LS+G D DK APKQKIRIKLRSYWV
Sbjct: 61  VLEPPPETLDGSETLDGSGADGVEVGDSETPSTSSLSVGADADKAAPKQKIRIKLRSYWV 120

Query: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARFHFEIRTHQRLID 180
           PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRI+CVLKSPHVHKDARFHFEIRTHQRLID
Sbjct: 121 PLIEDSCKQIMDAARNTNAKTMGPVPLPTKKRIHCVLKSPHVHKDARFHFEIRTHQRLID 180

Query: 181 ILYPTAQTIDSLMQLDLPAGVDVEVKL 207
           ILYPTAQTIDSLMQLDLPAGVDVE+ L
Sbjct: 181 ILYPTAQTIDSLMQLDLPAGVDVELVL 207

The following BLAST results are available for this feature:

BLAST of Cucsa.281490 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR10_MESCR	5.1e-65	66.51	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS...	[more]
RR10_ARATH	1.6e-63	66.02	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S...	[more]
RR10_CYAPA	1.5e-32	66.33	Cyanelle 30S ribosomal protein S10 OS=Cyanophora paradoxa GN=rps10 PE=3 SV=1	[more]
RS10_CYAP7	5.7e-32	62.00	30S ribosomal protein S10 OS=Cyanothece sp. (strain PCC 7424) GN=rpsJ PE=3 SV=1	[more]
RR10_PORPU	7.4e-32	65.31	30S ribosomal protein S10, chloroplastic OS=Porphyra purpurea GN=rps10 PE=3 SV=1	[more]

BLAST of Cucsa.281490 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEH6_CUCSA	8.6e-112	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G769090 PE=3 SV=1	[more]
W9QQJ9_9ROSA	7.1e-74	71.98	30S ribosomal protein S10 OS=Morus notabilis GN=L484_018244 PE=3 SV=1	[more]
M5WVB4_PRUPE	1.5e-71	71.98	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011713mg PE=3 SV=1	[more]
I3S9B7_LOTJA	2.5e-71	71.84	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
A0A067L5B3_JATCU	1.1e-69	67.73	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01016 PE=3 SV=1	[more]

BLAST of Cucsa.281490 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13120.1	9.2e-65	66.02	Ribosomal protein S10p/S20e family protein	[more]
AT3G45030.1	2.0e-06	29.66	Ribosomal protein S10p/S20e family protein	[more]
AT5G62300.1	2.0e-06	29.66	Ribosomal protein S10p/S20e family protein	[more]
AT3G47370.2	2.6e-06	31.31	Ribosomal protein S10p/S20e family protein	[more]

BLAST of Cucsa.281490 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449465511\|ref\|XP_004150471.1\|	1.2e-111	100.00	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis sativus]	[more]
gi\|659126003\|ref\|XP_008462962.1\|	1.1e-107	97.09	PREDICTED: 30S ribosomal protein S10, chloroplastic [Cucumis melo]	[more]
gi\|1009169482\|ref\|XP_015865689.1\|	8.1e-79	74.88	PREDICTED: 30S ribosomal protein S10, chloroplastic [Ziziphus jujuba]	[more]
gi\|658028895\|ref\|XP_008349887.1\|	6.0e-74	73.43	PREDICTED: 30S ribosomal protein S10, chloroplastic-like [Malus domestica]	[more]
gi\|703069318\|ref\|XP_010088470.1\|	1.0e-73	71.98	30S ribosomal protein S10 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR018268	Ribosomal_S10_CS
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome
GO:0003723	RNA binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome
GO:0005622	intracellular

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006364	rRNA processing
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.281490.1	Cucsa.281490.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PRINTS	PR00971	RIBOSOMALS10	coord: 109..122 score: 6.5E-15coord: 165..179 score: 6.5E-15coord: 144..159 score: 6.5
IPR001848	Ribosomal protein S10	HAMAP	MF_00508	Ribosomal_S10	coord: 107..206 score: 24
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 2..206 score: 2.1
IPR001848	Ribosomal protein S10	TIGRFAMs	TIGR01049	TIGR01049	coord: 108..205 score: 1.2
IPR018268	Ribosomal protein S10, conserved site	PROSITE	PS00361	RIBOSOMAL_S10	coord: 133..148 scor
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 108..206 score: 4.0
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 111..205 score: 3.2
IPR027486	Ribosomal protein S10 domain	SMART	SM01403	Ribosomal_S10_2	coord: 111..205 score: 3.9
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 109..206 score: 2.88
None	No IPR available	PANTHER	PTHR11700:SF9	37S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 2..206 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.281490	Cla003284	Watermelon (97103) v1	cgywmB516
Cucsa.281490	MELO3C024899	Melon (DHL92) v3.5.1	cgymeB470
Cucsa.281490	ClCG09G021040	Watermelon (Charleston Gray)	cgywcgB487
Cucsa.281490	CSPI03G34540	Wild cucumber (PI 183967)	cgycpiB423
Cucsa.281490	CmaCh09G009860	Cucurbita maxima (Rimu)	cgycmaB0783
Cucsa.281490	CmaCh01G010940	Cucurbita maxima (Rimu)	cgycmaB0784
Cucsa.281490	CmoCh09G009890	Cucurbita moschata (Rifu)	cgycmoB0778
Cucsa.281490	CmoCh01G011410	Cucurbita moschata (Rifu)	cgycmoB0779
Cucsa.281490	Lsi02G018570	Bottle gourd (USVL1VR-Ls)	cgylsiB456
Cucsa.281490	Cp4.1LG02g00620	Cucurbita pepo (Zucchini)	cgycpeB0739
Cucsa.281490	Cp4.1LG06g08510	Cucurbita pepo (Zucchini)	cgycpeB0740
Cucsa.281490	MELO3C024899.2	Melon (DHL92) v3.6.1	cgymedB467
Cucsa.281490	CsaV3_7G018640	Cucumber (Chinese Long) v3	cgycucB431
Cucsa.281490	Cla97C09G182460	Watermelon (97103) v2	cgywmbB490
Cucsa.281490	Bhi09G001447	Wax gourd	cgywgoB569
Cucsa.281490	Carg22394	Silver-seed gourd	carcgyB1004
Cucsa.281490	Carg12851	Silver-seed gourd	carcgyB1024

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.281490	Cucumber (Chinese Long) v2	cgycuB400