WMU54720 (transcribed_cluster) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	WMU54720
Type	transcribed_cluster
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	30S ribosomal protein S10, putative
Location	Chr9 : 33028839 .. 33030206 (+)
Sequence length	382

Genome Viewer

Sequences

The following sequences are available for this feature:

transcribed_cluster sequence

GTTCACAAGGATGCAAGATTCCATTTTGAAATCAGAACCCACCAACGCCTCATCGATATTTTGTACCCTACTGCCCAAACAATCGATTCTTTGATGCAACTAGACCTTCCTGCTGGTGTCGACGTCGAGGTCAAGCTATGAAGAGAAAAGCTTCACCTAGGTAATGGGGTTTCTGAGGATGTAACTACTGATATATATCAGAGCCTGAAAATTGTGTAGACGATAATGATGGAACAGGTCTTAGAGACGATGGCTGGTCCTTACAGTATGCTTTTCTTTGCTTGAATTGCTATGCCAATATGGAAATGGAGCAATGGAAATATAGGACTGTTAAAATCACATTTTCCTTTTTGTTAGTTTCTTTGCTGCTTTGCAGTCTCTT

Library


Library category	ESTs
watermelon fruit 10d library	1

Homology

[Close]

BLAST of WMU54720 vs. TAIR10
Match: AT3G13120.1 (AT3G13120.1 Ribosomal protein S10p/S20e family protein)

HSP 1 Score: 94.4 bits (233), Expect = 5.5e-20
Identity = 45/46 (97.83%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 146 VHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

Query: 61   120
           
Sbjct: 206  191

Query: 121  139
           
Sbjct: 266  191

[Close]

BLAST of WMU54720 vs. Swiss-Prot
Match: RR10_MESCR (30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 5.8e-19
Identity = 46/46 (100.00%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 152 VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 197

Query: 61   120
           
Sbjct: 212  197

Query: 121  139
           
Sbjct: 272  197

[Close]

BLAST of WMU54720 vs. Swiss-Prot
Match: RR10_ARATH (30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 9.8e-19
Identity = 45/46 (97.83%), Postives = 44/46 (95.65%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQR+IDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 146 VHKDARFHFEIRTHQRMIDILYPTAQTIDSLMQLDLPAGVDVEVKL 191

Query: 61   120
           
Sbjct: 206  191

Query: 121  139
           
Sbjct: 266  191

[Close]

BLAST of WMU54720 vs. Swiss-Prot
Match: RS10_PROAC (30S ribosomal protein S10 OS=Propionibacterium acnes (strain KPA171202 / DSM 16379) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 1.1e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 4   HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 63
           +KD+R HFE+RTH+RLIDIL PT +T+DSLM+LDLPAGVD+E+KL
Sbjct: 58  YKDSREHFEMRTHKRLIDILEPTPKTVDSLMRLDLPAGVDIEIKL 102

Query: 64   123
           
Sbjct: 118  102

Query: 124  139
           
Sbjct: 178  102

[Close]

BLAST of WMU54720 vs. Swiss-Prot
Match: RS10_FRASN (30S ribosomal protein S10 OS=Frankia sp. (strain EAN1pec) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 4   HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 63
           +KD+R HFE+RTH+RLIDIL PT +T+DSLM+LDLPAGVD+E+KL
Sbjct: 58  YKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDLPAGVDIEIKL 102

Query: 64   123
           
Sbjct: 118  102

Query: 124  139
           
Sbjct: 178  102

[Close]

BLAST of WMU54720 vs. Swiss-Prot
Match: RS10_FRAAA (30S ribosomal protein S10 OS=Frankia alni (strain ACN14a) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.4e-12
Identity = 33/45 (73.33%), Postives = 40/45 (88.89%), Query Frame = 1


Query: 4   HKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 63
           +KD+R HFE+RTH+RLIDIL PT +T+DSLM+LDLPAGVD+E+KL
Sbjct: 58  YKDSREHFEMRTHKRLIDILDPTPKTVDSLMRLDLPAGVDIEIKL 102

Query: 64   123
           
Sbjct: 118  102

Query: 124  139
           
Sbjct: 178  102

[Close]

BLAST of WMU54720 vs. NCBI nr
Match: gi|147798522|emb|CAN74383.1| (hypothetical protein VITISV_023801 [Vitis vinifera])

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 158 VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 203

Query: 61   120
           
Sbjct: 218  203

Query: 121  139
           
Sbjct: 278  203

[Close]

BLAST of WMU54720 vs. NCBI nr
Match: gi|802588624|ref|XP_012070989.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas])

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 168 VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 213

Query: 61   120
           
Sbjct: 228  213

Query: 121  139
           
Sbjct: 288  213

[Close]

BLAST of WMU54720 vs. NCBI nr
Match: gi|595874114|ref|XP_007212084.1| (hypothetical protein PRUPE_ppa011713mg [Prunus persica])

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 154 VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 199

Query: 61   120
           
Sbjct: 214  199

Query: 121  139
           
Sbjct: 274  199

[Close]

BLAST of WMU54720 vs. NCBI nr
Match: gi|162945917|gb|ABY20970.1| (chloroplast 30S ribosomal protein S10, partial [Daucus carota])

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 56  VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 101

Query: 61   120
           
Sbjct: 116  101

Query: 121  139
           
Sbjct: 176  101

[Close]

BLAST of WMU54720 vs. NCBI nr
Match: gi|657987535|ref|XP_008385921.1| (PREDICTED: 30S ribosomal protein S10, chloroplastic [Malus domestica])

HSP 1 Score: 95.1 bits (235), Expect = 9.2e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1


Query: 1   VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 60
           VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL
Sbjct: 66  VHKDARFHFEIRTHQRLIDILYPTAQTIDSLMQLDLPAGVDVEVKL 111

Query: 61   120
           
Sbjct: 126  111

Query: 121  139
           
Sbjct: 186  111

The following BLAST results are available for this feature:

BLAST of WMU54720 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13120.1	5.5e-20	97.83	Ribosomal protein S10p/S20e family protein	[more]

BLAST of WMU54720 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RR10_MESCR	5.8e-19	100.00	30S ribosomal protein S10, chloroplastic OS=Mesembryanthemum crystallinum GN=RPS...	[more]
RR10_ARATH	9.8e-19	97.83	30S ribosomal protein S10, chloroplastic OS=Arabidopsis thaliana GN=RPS10 PE=2 S...	[more]
RS10_PROAC	1.1e-12	73.33	30S ribosomal protein S10 OS=Propionibacterium acnes (strain KPA171202 / DSM 163...	[more]
RS10_FRASN	1.4e-12	73.33	30S ribosomal protein S10 OS=Frankia sp. (strain EAN1pec) GN=rpsJ PE=3 SV=1	[more]
RS10_FRAAA	1.4e-12	73.33	30S ribosomal protein S10 OS=Frankia alni (strain ACN14a) GN=rpsJ PE=3 SV=1	[more]

BLAST of WMU54720 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147798522\|emb\|CAN74383.1\|	9.2e-17	100.00	hypothetical protein VITISV_023801 [Vitis vinifera]	[more]
gi\|802588624\|ref\|XP_012070989.1\|	9.2e-17	100.00	PREDICTED: 30S ribosomal protein S10, chloroplastic [Jatropha curcas]	[more]
gi\|595874114\|ref\|XP_007212084.1\|	9.2e-17	100.00	hypothetical protein PRUPE_ppa011713mg [Prunus persica]	[more]
gi\|162945917\|gb\|ABY20970.1\|	9.2e-17	100.00	chloroplast 30S ribosomal protein S10, partial [Daucus carota]	[more]
gi\|657987535\|ref\|XP_008385921.1\|	9.2e-17	100.00	PREDICTED: 30S ribosomal protein S10, chloroplastic [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this transcribed_cluster:

Vocabulary: **INTERPRO**
Term	Definition
IPR001848	Ribosomal_S10
IPR027486	Ribosomal_S10_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This transcribed_cluster is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This transcribed_cluster is associated with the following gene feature(s):


Feature Name	Unique Name	Type
Cla003284	Cla003284	gene

The following EST feature(s) are a part of this transcribed_cluster:


Feature Name	Unique Name	Type
S1_0105819	S1_0105819	EST

InterPro

Analysis Name: InterPro Annotations of watermelon unigene v2
Date Performed: 2016-11-16


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001848	Ribosomal protein S10	PANTHER	PTHR11700	30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER	coord: 1..46 score: 3.5
IPR027486	Ribosomal protein S10 domain	GENE3D	G3DSA:3.30.70.600		coord: 1..46 score: 7.5
IPR027486	Ribosomal protein S10 domain	PFAM	PF00338	Ribosomal_S10	coord: 1..45 score: 1.0
IPR027486	Ribosomal protein S10 domain	unknown	SSF54999	Ribosomal protein S10	coord: 1..46 score: 1.14
None	No IPR available	PANTHER	PTHR11700:SF9	37S RIBOSOMAL PROTEIN S10, MITOCHONDRIAL	coord: 1..46 score: 3.5