Cla002654 (gene) Watermelon (97103) v1

Overview
NameCla002654
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionPentatricopeptide repeat-containing protein (AHRD V1 *-*- D7KCG2_ARALL); contains Interpro domain(s) IPR002885 Pentatricopeptide repeat
LocationChr3 : 4200857 .. 4201633 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

mRNA sequence

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

Coding sequence (CDS)

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

Protein sequence

MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNWID
Homology
[Close]
BLAST of Cla002654 vs. Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-09
Identity = 46/179 (25.70%), Postives = 82/179 (45.81%), Query Frame = 1 

Query: 64  NLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQ---SDFALTMSLLTR 123
           N L+  LCL      A+ LL+  + +      +    L + L  Q   +D    +S +  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 124 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 183
             +H N  +YS     +LI    K  K++EA+ ++  M   G  CKP+  VY  L+ GLC
Sbjct: 356 RGYHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLC 415

Query: 184 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTK 240
           R+G   +A ++L  MI S  +P+ +  + + +   +  +  EA+++ + ++  G    K
Sbjct: 416 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNK 467


HSP 2 Score: 44.7 bits (104), Expect = 1.8e-03
Identity = 29/96 (30.21%), Postives = 43/96 (44.79%), Query Frame = 1 

Query: 131 STPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALK 190
           S  I  +LI   CK+       K+   M   G  C P+E  Y TLI GLC KG    A+ 
Sbjct: 256 SPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKG--CVPNEVTYNTLIHGLCLKGKLDKAVS 315

Query: 191 VLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMEL 227
           +L  M+ S  +P+      +   L+++    +A+ L
Sbjct: 316 LLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRL 349


HSP 3 Score: 37.4 bits (85), Expect = 2.9e-01
Identity = 33/132 (25.00%), Postives = 56/132 (42.42%), Query Frame = 1 

Query: 137 MLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMI 196
           ++I + CK R    A+++F  M  P   C PD   Y TL+ GLC++    +A+ +L  M 
Sbjct: 192 LVIKALCKLRFVDRAIEVFRGM--PERKCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQ 251

Query: 197 DSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVG------DQNT-------KDHLR 256
                P   + N +   L ++  +    +L + +   G        NT       K  L 
Sbjct: 252 SEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLD 311

[Close]
BLAST of Cla002654 vs. Swiss-Prot
Match: PP384_ARATH (Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN=At5g15280 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-08
Identity = 49/178 (27.53%), Postives = 79/178 (44.38%), Query Frame = 1 

Query: 52  NTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSL-ASQSD 111
           N  L    L   N L+ R        TA++LLD        L     ++L  SL AS++ 
Sbjct: 520 NMVLDRSVLPEFNSLIVRASEDGDLQTALRLLDEMARWGQKLSRRSFAVLMRSLCASRAH 579

Query: 112 FALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDER 171
             +++SLL +    + A       +  L+  YCK+  S+ +  IFH M++   P   D  
Sbjct: 580 LRVSISLLEKW--PKLAYQLDGETLNFLVQEYCKKGFSRHSKLIFHKMVQMHHPI--DNV 639

Query: 172 VYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNE 229
            Y +LI   C+K    D L V     + N +PD +    ++ CL+R+ ++ E ++L E
Sbjct: 640 TYTSLIRCFCKKETLNDLLNVWGAAQNDNWLPDLNDCGDLWNCLVRKGLVEEVVQLFE 693


HSP 2 Score: 32.3 bits (72), Expect = 9.3e+00
Identity = 20/70 (28.57%), Postives = 28/70 (40.00%), Query Frame = 1 

Query: 162 GSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIG 221
           G  C  ++ VY  LI GLC +     A  +L  M+D   +P       +   L R    G
Sbjct: 732 GEGCIVEQEVYNHLIKGLCTEKKDSAAFAILDEMLDKKHIPSLGSCLMLIPRLCRANKAG 791

Query: 222 EAMELNETLN 232
            A  L E ++
Sbjct: 792 TAFNLAEQID 801

[Close]
BLAST of Cla002654 vs. Swiss-Prot
Match: PP306_ARATH (Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN=At4g11690 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 42/171 (24.56%), Postives = 75/171 (43.86%), Query Frame = 1 

Query: 60  LTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLT 119
           L   N+L+   C     S A +++            +  +IL  + A   +    + L  
Sbjct: 373 LVTYNILVSGFCRKGDTSGAAKMVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQL-- 432

Query: 120 RLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGL 179
           RL      L+      ++LI  +C + +  EA ++F  M+     C+P+E +Y T+I G 
Sbjct: 433 RLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKN--CEPNEVIYNTMILGY 492

Query: 180 CRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETL 231
           C++G +  ALK+L+ M +  L P+     ++   L +E    EA  L E +
Sbjct: 493 CKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVEKM 539


HSP 2 Score: 38.9 bits (89), Expect = 1.0e-01
Identity = 27/92 (29.35%), Postives = 41/92 (44.57%), Query Frame = 1 

Query: 143 CKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVP 202
           CK  ++K+A ++F  M   G  C  +   Y TLI GLCR+    +A KV+  M    + P
Sbjct: 279 CKDGRTKDAFQVFDEMRERGVSC--NIVTYNTLIGGLCREMKLNEANKVVDQMKSDGINP 338

Query: 203 DCHLRNWVFRCLLREAMIGEAMELNETLNFVG 235
           +    N +         +G+A+ L   L   G
Sbjct: 339 NLITYNTLIDGFCGVGKLGKALSLCRDLKSRG 368

[Close]
BLAST of Cla002654 vs. Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 46/184 (25.00%), Postives = 82/184 (44.57%), Query Frame = 1 

Query: 50  KPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQS 109
           +PNT          N L+  L L+N  S A+ L+D  +        +   ++ + L  + 
Sbjct: 183 QPNTV-------TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRG 242

Query: 110 DFALTMSLLTRLYHHR---NALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCK 169
           D  L  +LL ++   +     L+Y+T     +I   CK +   +AL +F  M   G   +
Sbjct: 243 DTDLAFNLLNKMEQGKLEPGVLIYNT-----IIDGLCKYKHMDDALNLFKEMETKG--IR 302

Query: 170 PDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMEL 229
           P+   Y +LI+ LC  G   DA ++L +MI+  + PD    + +    ++E  + EA +L
Sbjct: 303 PNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKL 352

Query: 230 NETL 231
            + +
Sbjct: 363 YDEM 352


HSP 2 Score: 43.9 bits (102), Expect = 3.1e-03
Identity = 30/105 (28.57%), Postives = 49/105 (46.67%), Query Frame = 1 

Query: 137 MLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMI 196
           ++I   CK  K ++   +F  +   G   KPD   Y T+I+G CRKG   +A  + + M 
Sbjct: 506 IMIEGMCKAGKVEDGWDLFCNLSLKG--VKPDVVAYNTMISGFCRKGSKEEADALFKEMK 565

Query: 197 DSNLVPDCHLRNWVFRCLLREAMIGEAMELNETL---NFVGDQNT 239
           +   +P+    N + R  LR+     + EL + +    F GD +T
Sbjct: 566 EDGTLPNSGCYNTLIRARLRDGDREASAELIKEMRSCGFAGDAST 608


HSP 3 Score: 41.6 bits (96), Expect = 1.5e-02
Identity = 39/186 (20.97%), Postives = 77/186 (41.40%), Query Frame = 1 

Query: 52  NTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDF 111
           N  + H+  T  ++L+   C  +    A+ +L   +        + LS L +        
Sbjct: 109 NLGIPHNHYT-YSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRI 168

Query: 112 ALTMSLLTRLY---HHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPD 171
           +  ++L+ +++   +  N + ++T     LI       K+ EA+ +   M+  G  C+PD
Sbjct: 169 SEAVALVDQMFVTGYQPNTVTFNT-----LIHGLFLHNKASEAMALIDRMVAKG--CQPD 228

Query: 172 ERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNE 231
              Y  ++ GLC++G T  A  +L  M    L P   + N +   L +   + +A+ L +
Sbjct: 229 LVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFK 286

Query: 232 TLNFVG 235
            +   G
Sbjct: 289 EMETKG 286


HSP 4 Score: 41.2 bits (95), Expect = 2.0e-02
Identity = 37/170 (21.76%), Postives = 71/170 (41.76%), Query Frame = 1 

Query: 59  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 118
           ++  ++ LL   C     S A+ L+D   +T     ++  + L H L   +  +  M+L+
Sbjct: 150 NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALI 209

Query: 119 TRLYHHRNALLYSTPIIT--MLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLI 178
            R+     A      ++T  +++   CKR  +  A  + + M +     +P   +Y T+I
Sbjct: 210 DRMV----AKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ--GKLEPGVLIYNTII 269

Query: 179 AGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMEL 227
            GLC+     DAL + + M    + P+    + +  CL       +A  L
Sbjct: 270 DGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRL 313


HSP 5 Score: 33.9 bits (76), Expect = 3.2e+00
Identity = 26/110 (23.64%), Postives = 46/110 (41.82%), Query Frame = 1 

Query: 125 RNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGM 184
           +  L+ +T    +LI    +      A +IF  M+  G P  P+   Y TL+ GLC+ G 
Sbjct: 424 QRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVP--PNIMTYNTLLDGLCKNGK 483

Query: 185 TLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVG 235
              A+ V   +  S + P  +  N +   + +   + +  +L   L+  G
Sbjct: 484 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKG 531

[Close]
BLAST of Cla002654 vs. Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 2.7e-07
Identity = 45/175 (25.71%), Postives = 79/175 (45.14%), Query Frame = 1 

Query: 59  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 118
           D      L+  L L+N  S A+ L+D  +        +   ++ + L  + D  L  +LL
Sbjct: 189 DTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLL 248

Query: 119 TRLYHHR---NALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTL 178
            ++   +   N ++YST     +I S CK R   +AL +F  M   G   +P+   Y +L
Sbjct: 249 NKMEAAKIEANVVIYST-----VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSL 308

Query: 179 IAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETL 231
           I+ LC      DA ++L +MI+  + P+    N +    ++E  + EA +L + +
Sbjct: 309 ISCLCNYERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356


HSP 2 Score: 40.8 bits (94), Expect = 2.6e-02
Identity = 22/67 (32.84%), Postives = 35/67 (52.24%), Query Frame = 1 

Query: 137 MLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMI 196
           ++I   CK  K ++   +F  +   G   KPD  +Y T+I+G CRKG+  +A  + R M 
Sbjct: 510 IMIEGMCKAGKVEDGWDLFCSLSLKG--VKPDVIIYNTMISGFCRKGLKEEADALFRKMR 569

Query: 197 DSNLVPD 204
           +   +PD
Sbjct: 570 EDGPLPD 574


HSP 3 Score: 33.5 bits (75), Expect = 4.2e+00
Identity = 30/130 (23.08%), Postives = 47/130 (36.15%), Query Frame = 1 

Query: 138 LIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMID 197
           LI  +C   +  EA  +F  M+     C P+   Y TLI G C+     + +++ R M  
Sbjct: 371 LINGFCMHDRLDEAKHMFELMI--SKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMSQ 430

Query: 198 SNLV----------------PDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDH 252
             LV                 DC     VF+ ++ + +    M  N  L+ +      + 
Sbjct: 431 RGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPNIMTYNTLLDGLCKNGKLEK 490

[Close]
BLAST of Cla002654 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 7.2e-116
Identity = 218/258 (84.50%), Postives = 230/258 (89.15%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK IRQ+LL L RLPL P+LL  QIPAI SP SSSSS ISDS SA IATKPNTTLTHD+L
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCL+NH STAI LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYSTPI+TMLI SYCKRRKSKEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGMT DALKVLRNMIDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLR+VSELL+RIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]
BLAST of Cla002654 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1)

HSP 1 Score: 228.4 bits (581), Expect = 9.9e-57
Identity = 133/263 (50.57%), Postives = 167/263 (63.50%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTT--LTHD 60
           MK++++   PLH L L  +        I     S+S+S  DS +A   T    T  LT +
Sbjct: 1   MKSVQK---PLHILSLASK------STITPRTFSTSTSAIDSITAPKPTNQTQTQSLTQE 60

Query: 61  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           + T INLLLPRLCL NH  TA  L    LLTNP L+SL LSIL HS  SQ D A  MSLL
Sbjct: 61  EHTKINLLLPRLCLLNHLDTATHLTITALLTNPPLKSLSLSILIHSFTSQPDMARPMSLL 120

Query: 121 TRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180
           TRL H+  +  Y TPI TM I SY K+ K KEALK+F+W++RPGSPC  DERV + L+ G
Sbjct: 121 TRLRHNPPSHPYLTPITTMFIASYFKKNKPKEALKMFNWLVRPGSPCVLDERVCEVLVNG 180

Query: 181 LCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
            C+ GM L+ALKVLR M+ +N+VP C L+ WV++ LLREA I EA+ELNE L  VGD+  
Sbjct: 181 FCKNGMVLEALKVLRAMLSTNIVPGCDLKKWVYKVLLREARIKEAVELNEALGCVGDREK 240

Query: 241 KDH---LRKVSELLDRIITNWID 259
            D    ++KV  LLD +I NW +
Sbjct: 241 GDESECVKKVLALLDHMIGNWAE 254

[Close]
BLAST of Cla002654 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.4e-47
Identity = 108/226 (47.79%), Postives = 145/226 (64.16%), Query Frame = 1 

Query: 33  SSSSSSISDSASAFIATKPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPS 92
           SSSSS I  S ++ ++      LT  +LT INLL+PRLCL +H +TAI L   +LLTNP 
Sbjct: 33  SSSSSEIEKSKNSELS------LTQQELTKINLLIPRLCLSDHLTTAIHLTTTSLLTNPP 92

Query: 93  LQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEAL 152
            +S+  SIL H L SQ D A +MS LT L H      + TPI TMLI SY K+R+ KEAL
Sbjct: 93  QKSISFSILIHFLTSQPDMAKSMSFLTILRHTPQVHCHLTPITTMLITSYVKKRRPKEAL 152

Query: 153 KIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFR 212
           K++ WM RPGSPCK +  VY+ L+   C  G+ L+ L++L++M+    VP   LR  V+R
Sbjct: 153 KVYQWMQRPGSPCKVERIVYEVLVNRFCGFGLVLEGLRILKDMVAVGFVPKNGLRRTVYR 212

Query: 213 CLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNWID 259
            LLREA +G+A+ELNE L    + +  + ++KV ELLD II NW +
Sbjct: 213 SLLREARVGKAVELNEALYGCFEDDNGEGVKKVRELLDSIIGNWTE 252

[Close]
BLAST of Cla002654 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2)

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 107/231 (46.32%), Postives = 149/231 (64.50%), Query Frame = 1 

Query: 26  PAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDA 85
           P  H   +  SSSI D       ++  TTLT +++T INLL+PRLCL NH +TAIQL+  
Sbjct: 27  PFSHQLFALFSSSI-DIPKLSTNSEVVTTLTQEEVTKINLLIPRLCLLNHLTTAIQLITT 86

Query: 86  TLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKR 145
           +LL NP  +SL  SIL+HSL SQ D    MSLLT L H   A  + +P+ TMLI SY K+
Sbjct: 87  SLLANPPPKSLSFSILTHSLTSQPDMTKPMSLLTILRHTPQAHSHLSPMNTMLITSYIKK 146

Query: 146 RKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCH 205
           ++ KEALK+++WMLRPGSPCK ++ V+  L+ GLC  G  L+ LKVL++M+    +P   
Sbjct: 147 KRPKEALKVYNWMLRPGSPCKVEKIVFCVLVNGLCEIGWVLEGLKVLKDMVSVGFLPIGG 206

Query: 206 LRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNW 257
           L+  V+R LL EA + EA+EL++ L    +  + +  +KV +LLD +I NW
Sbjct: 207 LKERVYRSLLSEARVKEAVELDKALCDCFEDVSGEGGKKVIDLLDSLIRNW 256

[Close]
BLAST of Cla002654 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.3e-43
Identity = 114/260 (43.85%), Postives = 152/260 (58.46%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNT--TLTHD 60
           MKT++   L   +  LPP       P+     S S S+I +    ++ T+P    TL+ +
Sbjct: 1   MKTLK---LQQFQFLLPPIAASKTQPSKQQIFSYSFSAIPNLTDTYLNTRPKNFPTLSQE 60

Query: 61  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTN--PSLQSLPLSILSHSLASQSDFALTMS 120
            ++ INLL+PRLCL NH +TAIQL    LLTN  P+ +SL +SIL HSL  Q D  L+MS
Sbjct: 61  QVSKINLLIPRLCLSNHLTTAIQLTTTALLTNASPNPKSLSVSILIHSLTLQPDLKLSMS 120

Query: 121 LLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLI 180
           LLTRL H   A  + TP+ TMLI SY K+ + K+ALK+++WM RPGSPC  D+  Y  L+
Sbjct: 121 LLTRLNHIPQAHPHLTPVSTMLIASYLKKGRHKDALKVYNWMRRPGSPCTVDKDAYGILV 180

Query: 181 AGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQ 240
              C  G+ L+ L VLR+M+  +L+P   LR  V R LLREA + EA    E L  V   
Sbjct: 181 GRFCASGVVLEGLMVLRDMLKVHLLPGEGLRKKVVRSLLREARVREAEAFEELLPCVACV 240

Query: 241 NTKDHLRKVSELLDRIITNW 257
                L KV +LLD +I NW
Sbjct: 241 GA---LNKVLDLLDHLIGNW 254

[Close]
BLAST of Cla002654 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 427.6 bits (1098), Expect = 1.6e-116
Identity = 220/258 (85.27%), Postives = 230/258 (89.15%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK IRQ+LL L RLPL P+LL  QIP I SP SSSSS IS S SA IAT+PNTTLTHD+L
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCLYNH STAI LL ATLLTNPSLQSL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYSTPI+TMLI SYCKRRKSKEALKIFHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGMT DALKVLRNMIDSNLVPDC LRNWVFRCLLREAMI EAME NET NFVGDQ+T D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTID 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLR+VSELL+RIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]
BLAST of Cla002654 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 424.9 bits (1091), Expect = 1.0e-115
Identity = 218/258 (84.50%), Postives = 230/258 (89.15%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK IRQ+LL L RLPL P+LL  QIPAI SP SSSSS ISDS SA IATKPNTTLTHD+L
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCL+NH STAI LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYSTPI+TMLI SYCKRRKSKEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGMT DALKVLRNMIDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLR+VSELL+RIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]
BLAST of Cla002654 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 228.8 bits (582), Expect = 1.1e-56
Identity = 129/231 (55.84%), Postives = 155/231 (67.10%), Query Frame = 1 

Query: 31  PCSSSSSSISDSASAFIATKPNT---TLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATL 90
           P SSSSS+I+   S     KP T   TLT  D+TNINLLLPRLCL ++ +TA  L    L
Sbjct: 26  PFSSSSSTIASITSP----KPTTQTQTLTQQDVTNINLLLPRLCLSDNLNTATHLTITAL 85

Query: 91  LTNPSLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRK 150
           LTNP L SL LSIL HS  SQ D A  MSLLTRL HH  +  + TPI TMLI SY KR++
Sbjct: 86  LTNPPLHSLSLSILIHSFTSQPDMARPMSLLTRLRHHPPSHSHLTPITTMLIASYFKRKR 145

Query: 151 SKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLR 210
            +EALK+F+WM+RPGSP   DERV   L+ G CR GM L+AL VLR M+  N+VP C LR
Sbjct: 146 PREALKVFNWMVRPGSPVVLDERVCGVLVCGFCRNGMVLEALNVLRAMLGVNIVPGCDLR 205

Query: 211 NWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNWID 259
            WV+R LLREA I EA+ELN+ L+ VGD    +  RKV  LLD +I +W +
Sbjct: 206 KWVYRGLLREARIKEALELNKALDCVGD-GESEGFRKVLALLDHMIDSWTE 251

[Close]
BLAST of Cla002654 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica])

HSP 1 Score: 228.4 bits (581), Expect = 1.4e-56
Identity = 133/263 (50.57%), Postives = 167/263 (63.50%), Query Frame = 1 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTT--LTHD 60
           MK++++   PLH L L  +        I     S+S+S  DS +A   T    T  LT +
Sbjct: 1   MKSVQK---PLHILSLASK------STITPRTFSTSTSAIDSITAPKPTNQTQTQSLTQE 60

Query: 61  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           + T INLLLPRLCL NH  TA  L    LLTNP L+SL LSIL HS  SQ D A  MSLL
Sbjct: 61  EHTKINLLLPRLCLLNHLDTATHLTITALLTNPPLKSLSLSILIHSFTSQPDMARPMSLL 120

Query: 121 TRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180
           TRL H+  +  Y TPI TM I SY K+ K KEALK+F+W++RPGSPC  DERV + L+ G
Sbjct: 121 TRLRHNPPSHPYLTPITTMFIASYFKKNKPKEALKMFNWLVRPGSPCVLDERVCEVLVNG 180

Query: 181 LCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
            C+ GM L+ALKVLR M+ +N+VP C L+ WV++ LLREA I EA+ELNE L  VGD+  
Sbjct: 181 FCKNGMVLEALKVLRAMLSTNIVPGCDLKKWVYKVLLREARIKEAVELNEALGCVGDREK 240

Query: 241 KDH---LRKVSELLDRIITNWID 259
            D    ++KV  LLD +I NW +
Sbjct: 241 GDESECVKKVLALLDHMIGNWAE 254

[Close]
BLAST of Cla002654 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume])

HSP 1 Score: 225.3 bits (573), Expect = 1.2e-55
Identity = 124/230 (53.91%), Postives = 153/230 (66.52%), Query Frame = 1 

Query: 34  SSSSSISDSASAFIATKPNTT--LTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNP 93
           S+S+S  DS +A   T    T  LT ++ T INLLLPRLCL NH  TA  L    LLTNP
Sbjct: 25  STSTSAIDSITAPKPTNQAQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLTNP 84

Query: 94  SLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEA 153
            L+SL LSIL HS  SQ D A  MSLLTRL H+  +  Y TPI TM I SY K+ K KEA
Sbjct: 85  PLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPKEA 144

Query: 154 LKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVF 213
           LK+F+W++RPGSPC  DERV + L+ G C+ GM L+ LKVLR M+ +N+VP C L+ WV+
Sbjct: 145 LKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEVLKVLRAMLSTNIVPGCDLKKWVY 204

Query: 214 RCLLREAMIGEAMELNETLNFVGDQNTKDH---LRKVSELLDRIITNWID 259
           + LLREA I EA+ELNE L  VGD+   D    ++KV  LLD +I NW +
Sbjct: 205 KVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

The following BLAST results are available for this feature:
BLAST of Cla002654 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PP327_ARATH3.8e-0925.70Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN... [more]
PP384_ARATH7.1e-0827.53Pentatricopeptide repeat-containing protein At5g15280 OS=Arabidopsis thaliana GN... [more]
PP306_ARATH1.6e-0724.56Pentatricopeptide repeat-containing protein At4g11690 OS=Arabidopsis thaliana GN... [more]
PPR91_ARATH2.7e-0725.00Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop... [more]
PP102_ARATH2.7e-0725.71Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN... [more]
BLAST of Cla002654 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LRQ9_CUCSA7.2e-11684.50Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1[more]
M5WIJ3_PRUPE9.9e-5750.57Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1[more]
A0A067LG57_JATCU1.4e-4747.79Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1[more]
B9GN11_POPTR2.3e-4546.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2[more]
A0A061DVU2_THECC1.3e-4343.85Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_... [more]
BLAST of Cla002654 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659067591|ref|XP_008440255.1|1.6e-11685.27PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-... [more]
gi|449474047|ref|XP_004154059.1|1.0e-11584.50PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]
gi|764554710|ref|XP_004293884.2|1.1e-5655.84PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp... [more]
gi|595865128|ref|XP_007211897.1|1.4e-5650.57hypothetical protein PRUPE_ppa010317mg [Prunus persica][more]
gi|645238977|ref|XP_008225928.1|1.2e-5553.91PREDICTED: uncharacterized protein LOC103325527 [Prunus mume][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU04903watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU17322watermelon unigene v2 vs TrEMBLtranscribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002654Cla002654.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU04903WMU04903transcribed_cluster
WMU17322WMU17322transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 136..181
score: 5.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 171..204
score: 4.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 131..165
score: 8.342coord: 168..202
score: 11
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 10..96
score: 2.2E-24coord: 136..226
score: 2.2