CSPI01G09980 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G09980
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Chr1 : 6231125 .. 6233506 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGAAAAAATATATAAGAAGCAGAGTCTTTGAATGAGACTTTGCAAGGAGCAGAGTCGAGTTGAGTCTGAGAGGAAATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTCAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGACAGCATGTAGCTAGAAGGAGAAGAGAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTCATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATTGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAGATTTTAGTTACTTTTCTCATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAAGGAAGAGAAACTTGGTCGTTACCGGTGTATTCAATTTCCAGGGAGAGGAAAGGCAGTGATGCAGGACCCCATAGTCTTCACAAATCTTCAAAGTAGAAAGGCTTGAGCATCAAGTTCACATCAAATGTTACAAACTGGGATAAACAGCTGCAGAAATTGAGGGTATAATGTAACATAATGGTGGTTAAATGTCCCTGCAACCCGAGTGGAGGTTAACTACATAATTTTTTCTCTGTTTAGTATCATCATTTTGGACATGGGGTTTCAATAGAATCTTCGCAAAGTTCTCTCAGTTGGTGGTGGGTACTAAGCATTACCTAATTCAAACTCGTTAAGACACAAGTAGGTGGGCGTTCCAACTTGAAGTCTCACTCGTTCGAGTTTAGGGAAGAAAAACATCAAACTTATAATTAAGTTTTTTAAACCAGTCAAAAGTTTGAATGTACTCGTCAGCAATTTTGAACTTGATAAAAAACACTGTCTTGTTTTATTTTTAATGTGAATATTGTATCGGTTAACTTCGAGACATTTTTATGTTCCGTATGAAATTTAAATTCGAATACATATTTCAATCATATTTCTAATTATTAACTTATTTCAATCTGATAAACTAAACAACTTAACATCCATTATCAAAACCATTTTTTACATTTGAAGAGAGAAAATTATATATAGAAAGAGATGTTGAATATTACAACAA

mRNA sequence

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG

Coding sequence (CDS)

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG

Homology

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BLAST of CSPI01G09980 vs. Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQ---SDFALTMSLLTR 123
           N L+  LCL   L  A+SLL   + +    + ++   L + L  Q   +D    +S +  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 124 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
             +H N  +YS     +LIS   K  K++EA+ L+  M   G  CKP   VY  L+ GL 
Sbjct: 356 RGYHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLC 415

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAME 226
           R+G   +A ++L  MI S  +P+    + + +   K  +  EA++
Sbjct: 416 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

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BLAST of CSPI01G09980 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 138 LISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMID 197
           LIS++CK  +  EA+++F  M R G  CKP+   + +LI+GL        AL +LR+MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 198 SNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVG 235
             +V +    N +  + L+   I EA +  + + F G
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

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BLAST of CSPI01G09980 vs. Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           N L+  L LHN  S A++L+   +        ++  V+ + L  + D  L  +LL ++  
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  L+Y+T     +I   CK +   +AL LF  M   G   +P    Y +LI+ L 
Sbjct: 250 GKLEPGVLIYNT-----IIDGLCKYKHMDDALNLFKEMETKG--IRPNVVTYSSLISCLC 309

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
             G   DA ++L +MI+  + PD    + +  + +KE  + EA +  D +
Sbjct: 310 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

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BLAST of CSPI01G09980 vs. Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           ++L+   C    L TA+S L   + T   L     + L +      D +     +  +  
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMIN 465

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  + Y     T L+  YC + K  +AL+L+H M   G    P    + TL++GL+
Sbjct: 466 KKLEPTVVTY-----TSLMGGYCSKGKINKALRLYHEMT--GKGIAPSIYTFTTLLSGLF 525

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEF 227
           R G+  DA+K+   M + N+ P+    N +     +E  + +A EF
Sbjct: 526 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564

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BLAST of CSPI01G09980 vs. Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-06
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1


Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL---K 125
           L+  L LHN  S A++L+   +      + ++  V+ + L  + D  L  +LL ++   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255

Query: 126 HHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRK 185
              N ++YST     +I S CK R   +AL LF  M   G   +P    Y +LI+ L   
Sbjct: 256 IEANVVIYST-----VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNY 315

Query: 186 GMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
               DA ++L +MI+  + P+    N +  + +KE  + EA +  D +
Sbjct: 316 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

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BLAST of CSPI01G09980 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.8e-138
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

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BLAST of CSPI01G09980 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.6e-54
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNW 211
           EALK+F+W++RPGSPC  +ERV + L+ G  + GM  +ALKVLR M+ +N+VP CDL+ W
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKW 203

Query: 212 VFRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           V++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 VYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CSPI01G09980 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.1e-45
Identity = 107/235 (45.53%), Postives = 151/235 (64.26%), Query Frame = 1


Query: 26  PAILSPFSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLL 85
           P  + PF+    F + S S+ I    N+  +LT  ELT+INLL+PRLCL +HL+TAI L 
Sbjct: 20  PFAIYPFARQ--FCASSSSSEIEKSKNSELSLTQQELTKINLLIPRLCLSDHLTTAIHLT 79

Query: 86  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 145
             +LLTNP   S+S S+L H L SQ D A +MS LT L+H P    + TPI TMLI+SY 
Sbjct: 80  TTSLLTNPPQKSISFSILIHFLTSQPDMAKSMSFLTILRHTPQVHCHLTPITTMLITSYV 139

Query: 146 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPD 205
           K+R+ KEALK++ WM RPGSPCK E  VY+ L+      G+  + L++L++M+    VP 
Sbjct: 140 KKRRPKEALKVYQWMQRPGSPCKVERIVYEVLVNRFCGFGLVLEGLRILKDMVAVGFVPK 199

Query: 206 CDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNWID 259
             LR  V+RSLL+EA + +A+E N+AL    + +  + +++V ELL+ II NW +
Sbjct: 200 NGLRRTVYRSLLREARVGKAVELNEALYGCFEDDNGEGVKKVRELLDSIIGNWTE 252

[Close]

BLAST of CSPI01G09980 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 2.5e-44
Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1


Query: 29  LSPFSSS-----SSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLL 88
           +SPFS       SS I D P  S  ++  TTLT +E+T+INLL+PRLCL NHL+TAI L+
Sbjct: 25  ISPFSHQLFALFSSSI-DIPKLSTNSEVVTTLTQEEVTKINLLIPRLCLLNHLTTAIQLI 84

Query: 89  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 148
             +LL NP   SLS S+L+HSL SQ D    MSLLT L+H P A  + +P+ TMLI+SY 
Sbjct: 85  TTSLLANPPPKSLSFSILTHSLTSQPDMTKPMSLLTILRHTPQAHSHLSPMNTMLITSYI 144

Query: 149 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPD 208
           K+++ KEALK+++WMLRPGSPCK E+ V+  L+ GL   G   + LKVL++M+    +P 
Sbjct: 145 KKKRPKEALKVYNWMLRPGSPCKVEKIVFCVLVNGLCEIGWVLEGLKVLKDMVSVGFLPI 204

Query: 209 CDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNW 257
             L+  V+RSLL EA + EA+E + AL    +  + +  ++V +LL+ +I NW
Sbjct: 205 GGLKERVYRSLLSEARVKEAVELDKALCDCFEDVSGEGGKKVIDLLDSLIRNW 256

[Close]

BLAST of CSPI01G09980 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.4e-40
Identity = 103/229 (44.98%), Postives = 144/229 (62.88%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS S S I +     + T+P    TL+ +++++INLL+PRLCL NHL+TAI L    LLT
Sbjct: 29  FSYSFSAIPNLTDTYLNTRPKNFPTLSQEQVSKINLLIPRLCLSNHLTTAIQLTTTALLT 88

Query: 92  N--PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRK 151
           N  P+  SLS+S+L HSL  Q D  L+MSLLTRL H P A  + TP+ TMLI+SY K+ +
Sbjct: 89  NASPNPKSLSVSILIHSLTLQPDLKLSMSLLTRLNHIPQAHPHLTPVSTMLIASYLKKGR 148

Query: 152 SKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLR 211
            K+ALK+++WM RPGSPC  ++  Y  L+      G+  + L VLR+M+  +L+P   LR
Sbjct: 149 HKDALKVYNWMRRPGSPCTVDKDAYGILVGRFCASGVVLEGLMVLRDMLKVHLLPGEGLR 208

Query: 212 NWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNW 257
             V RSLL+EA + EA  F + L  V     +  L +V +LL+ +I NW
Sbjct: 209 KKVVRSLLREARVREAEAFEELLPCVA---CVGALNKVLDLLDHLIGNW 254

[Close]

BLAST of CSPI01G09980 vs. TAIR10
Match: AT4G20090.1 (AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQ---SDFALTMSLLTR 123
           N L+  LCL   L  A+SLL   + +    + ++   L + L  Q   +D    +S +  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 124 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
             +H N  +YS     +LIS   K  K++EA+ L+  M   G  CKP   VY  L+ GL 
Sbjct: 356 RGYHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLC 415

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAME 226
           R+G   +A ++L  MI S  +P+    + + +   K  +  EA++
Sbjct: 416 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

[Close]

BLAST of CSPI01G09980 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1


Query: 138 LISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMID 197
           LIS++CK  +  EA+++F  M R G  CKP+   + +LI+GL        AL +LR+MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 198 SNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVG 235
             +V +    N +  + L+   I EA +  + + F G
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

[Close]

BLAST of CSPI01G09980 vs. TAIR10
Match: AT1G62670.1 (AT1G62670.1 rna processing factor 2)

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           N L+  L LHN  S A++L+   +        ++  V+ + L  + D  L  +LL ++  
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  L+Y+T     +I   CK +   +AL LF  M   G   +P    Y +LI+ L 
Sbjct: 250 GKLEPGVLIYNT-----IIDGLCKYKHMDDALNLFKEMETKG--IRPNVVTYSSLISCLC 309

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
             G   DA ++L +MI+  + PD    + +  + +KE  + EA +  D +
Sbjct: 310 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

[Close]

BLAST of CSPI01G09980 vs. TAIR10
Match: AT5G59900.1 (AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-08
Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1


Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           ++L+   C    L TA+S L   + T   L     + L +      D +     +  +  
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMIN 465

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  + Y     T L+  YC + K  +AL+L+H M   G    P    + TL++GL+
Sbjct: 466 KKLEPTVVTY-----TSLMGGYCSKGKINKALRLYHEMT--GKGIAPSIYTFTTLLSGLF 525

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEF 227
           R G+  DA+K+   M + N+ P+    N +     +E  + +A EF
Sbjct: 526 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564

[Close]

BLAST of CSPI01G09980 vs. TAIR10
Match: AT1G63400.1 (AT1G63400.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1


Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL---K 125
           L+  L LHN  S A++L+   +      + ++  V+ + L  + D  L  +LL ++   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255

Query: 126 HHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRK 185
              N ++YST     +I S CK R   +AL LF  M   G   +P    Y +LI+ L   
Sbjct: 256 IEANVVIYST-----VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNY 315

Query: 186 GMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
               DA ++L +MI+  + P+    N +  + +KE  + EA +  D +
Sbjct: 316 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

[Close]

BLAST of CSPI01G09980 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-137
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]

BLAST of CSPI01G09980 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 245/258 (94.96%), Postives = 252/258 (97.67%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIP ILSPFSSSSSFIS SPSASIAT+PNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCL+NHLSTAI+LLHATLLTNPSL SLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALK+FHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFR LL+EAMIPEAMEFN+  NFVGDQ+TID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]

BLAST of CSPI01G09980 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 131/253 (51.78%), Postives = 167/253 (66.01%), Query Frame = 1


Query: 6   QQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINL 65
           QQ+L L   P   + L F       PFSSSSS I+   S    T+  T LT  ++T INL
Sbjct: 8   QQILCLASKPTITQQLSF-------PFSSSSSTIASITSPKPTTQTQT-LTQQDVTNINL 67

Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHP 125
           LLPRLCL ++L+TA  L    LLTNP LHSLSLS+L HS  SQ D A  MSLLTRL+HHP
Sbjct: 68  LLPRLCLSDNLNTATHLTITALLTNPPLHSLSLSILIHSFTSQPDMARPMSLLTRLRHHP 127

Query: 126 NALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMT 185
            +  + TPI TMLI+SY KR++ +EALK+F+WM+RPGSP   +ERV   L+ G  R GM 
Sbjct: 128 PSHSHLTPITTMLIASYFKRKRPREALKVFNWMVRPGSPVVLDERVCGVLVCGFCRNGMV 187

Query: 186 FDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRV 245
            +AL VLR M+  N+VP CDLR WV+R LL+EA I EA+E N AL+ VGD  + +  R+V
Sbjct: 188 LEALNVLRAMLGVNIVPGCDLRKWVYRGLLREARIKEALELNKALDCVGDGES-EGFRKV 247

Query: 246 SELLNRIITNWID 259
             LL+ +I +W +
Sbjct: 248 LALLDHMIDSWTE 251

[Close]

BLAST of CSPI01G09980 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica])

HSP 1 Score: 219.5 bits (558), Expect = 6.6e-54
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNW 211
           EALK+F+W++RPGSPC  +ERV + L+ G  + GM  +ALKVLR M+ +N+VP CDL+ W
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKW 203

Query: 212 VFRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           V++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 VYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CSPI01G09980 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume])

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 119/231 (51.52%), Postives = 157/231 (67.97%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNT-TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTN 91
           FS+S+S I    +     +  T +LT +E T+INLLLPRLCL NHL TA  L    LLTN
Sbjct: 24  FSTSTSAIDSITAPKPTNQAQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLTN 83

Query: 92  PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKE 151
           P L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K KE
Sbjct: 84  PPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPKE 143

Query: 152 ALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWV 211
           ALK+F+W++RPGSPC  +ERV + L+ G  + GM  + LKVLR M+ +N+VP CDL+ WV
Sbjct: 144 ALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEVLKVLRAMLSTNIVPGCDLKKWV 203

Query: 212 FRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           ++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 YKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

The following BLAST results are available for this feature:

BLAST of CSPI01G09980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP327_ARATH	4.2e-08	29.09	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN...	[more]
PP444_ARATH	1.0e-06	32.99	Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop...	[more]
PPR91_ARATH	1.4e-06	27.65	Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop...	[more]
PP437_ARATH	1.8e-06	25.90	Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th...	[more]
PP102_ARATH	3.0e-06	27.98	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN...	[more]

BLAST of CSPI01G09980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRQ9_CUCSA	8.8e-138	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1	[more]
M5WIJ3_PRUPE	4.6e-54	53.45	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1	[more]
A0A067LG57_JATCU	5.1e-45	45.53	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1	[more]
B9GN11_POPTR	2.5e-44	47.21	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2	[more]
A0A061DVU2_THECC	8.4e-40	44.98	Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CSPI01G09980 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G20090.1	2.4e-09	29.09	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G64320.1	5.8e-08	32.99	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62670.1	7.6e-08	27.65	rna processing factor 2	[more]
AT5G59900.1	9.9e-08	25.90	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63400.1	1.7e-07	27.98	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CSPI01G09980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474047\|ref\|XP_004154059.1\|	1.3e-137	100.00	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
gi\|659067591\|ref\|XP_008440255.1\|	1.1e-130	94.96	PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-...	[more]
gi\|764554710\|ref\|XP_004293884.2\|	2.1e-55	51.78	PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp...	[more]
gi\|595865128\|ref\|XP_007211897.1\|	6.6e-54	53.45	hypothetical protein PRUPE_ppa010317mg [Prunus persica]	[more]
gi\|645238977\|ref\|XP_008225928.1\|	3.3e-53	51.52	PREDICTED: uncharacterized protein LOC103325527 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G09980.1	CSPI01G09980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 171..199 score: 0.0011coord: 136..156 score: 7.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 136..156 score: 6.6E-4coord: 171..204 score: 5.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 168..202 score: 9.657coord: 131..165 score: 9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 12..226 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G09980	Cla002654	Watermelon (97103) v1	cpiwmB010
CSPI01G09980	Csa1G051900	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G09980	MELO3C002395	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G09980	ClCG03G004120	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G09980	Lsi02G005350	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G09980	CsaV3_1G010050	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G09980	Cla97C03G055280	Watermelon (97103) v2	cpiwmbB032
CSPI01G09980	BhiUN316G33	Wax gourd	cpiwgoB026
CSPI01G09980	CmaCh13G008370	Cucurbita maxima (Rimu)	cmacpiB206
CSPI01G09980	CmoCh13G008660	Cucurbita moschata (Rifu)	cmocpiB193
CSPI01G09980	Cp4.1LG20g02840	Cucurbita pepo (Zucchini)	cpecpiB517
CSPI01G09980	Carg07629	Silver-seed gourd	carcpiB1041

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G09980	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G09980	Cucumber (Gy14) v1	cgycpiB192
CSPI01G09980	Cucurbita maxima (Rimu)	cmacpiB401
CSPI01G09980	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G09980	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G09980	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G09980	Silver-seed gourd	carcpiB0531