CSPI01G09980.1 (mRNA) Wild cucumber (PI 183967)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGAAAAAATATATAAGAAGCAGAGTCTTTGAATGAGACTTTGCAAGGAGCAGAGTCGAGTTGAGTCTGAGAGGAAATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTCAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGACAGCATGTAGCTAGAAGGAGAAGAGAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTCATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATTGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAGATTTTAGTTACTTTTCTCATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAAGGAAGAGAAACTTGGTCGTTACCGGTGTATTCAATTTCCAGGGAGAGGAAAGGCAGTGATGCAGGACCCCATAGTCTTCACAAATCTTCAAAGTAGAAAGGCTTGAGCATCAAGTTCACATCAAATGTTACAAACTGGGATAAACAGCTGCAGAAATTGAGGGTATAATGTAACATAATGGTGGTTAAATGTCCCTGCAACCCGAGTGGAGGTTAACTACATAATTTTTTCTCTGTTTAGTATCATCATTTTGGACATGGGGTTTCAATAGAATCTTCGCAAAGTTCTCTCAGTTGGTGGTGGGTACTAAGCATTACCTAATTCAAACTCGTTAAGACACAAGTAGGTGGGCGTTCCAACTTGAAGTCTCACTCGTTCGAGTTTAGGGAAGAAAAACATCAAACTTATAATTAAGTTTTTTAAACCAGTCAAAAGTTTGAATGTACTCGTCAGCAATTTTGAACTTGATAAAAAACACTGTCTTGTTTTATTTTTAATGTGAATATTGTATCGGTTAACTTCGAGACATTTTTATGTTCCGTATGAAATTTAAATTCGAATACATATTTCAATCATATTTCTAATTATTAACTTATTTCAATCTGATAAACTAAACAACTTAACATCCATTATCAAAACCATTTTTTACATTTGAAGAGAGAAAATTATATATAGAAAGAGATGTTGAATATTACAACAA ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1) HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08 Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1) HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06 Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2) HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06 Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1) HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06 Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 3.0e-06 Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1) HSP 1 Score: 497.7 bits (1280), Expect = 8.8e-138 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1) HSP 1 Score: 219.5 bits (558), Expect = 4.6e-54 Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1) HSP 1 Score: 189.5 bits (480), Expect = 5.1e-45 Identity = 107/235 (45.53%), Postives = 151/235 (64.26%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2) HSP 1 Score: 187.2 bits (474), Expect = 2.5e-44 Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 8.4e-40 Identity = 103/229 (44.98%), Postives = 144/229 (62.88%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT4G20090.1 (AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09 Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08 Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT1G62670.1 (AT1G62670.1 rna processing factor 2) HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08 Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT5G59900.1 (AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 54.7 bits (130), Expect = 9.9e-08 Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT1G63400.1 (AT1G63400.1 Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07 Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus]) HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-137 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo]) HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130 Identity = 245/258 (94.96%), Postives = 252/258 (97.67%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca]) HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55 Identity = 131/253 (51.78%), Postives = 167/253 (66.01%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica]) HSP 1 Score: 219.5 bits (558), Expect = 6.6e-54 Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1
BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume]) HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53 Identity = 119/231 (51.52%), Postives = 157/231 (67.97%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
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