CSPI01G09980.1 (mRNA) Wild cucumber (PI 183967)

NameCSPI01G09980.1
TypemRNA
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionPentatricopeptide repeat-containing protein, putative
LocationChr1 : 6231125 .. 6233506 (+)
Sequence length777
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GGAAAAAATATATAAGAAGCAGAGTCTTTGAATGAGACTTTGCAAGGAGCAGAGTCGAGTTGAGTCTGAGAGGAAATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTCAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGACAGCATGTAGCTAGAAGGAGAAGAGAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTCATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATTGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAGATTTTAGTTACTTTTCTCATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAAGGAAGAGAAACTTGGTCGTTACCGGTGTATTCAATTTCCAGGGAGAGGAAAGGCAGTGATGCAGGACCCCATAGTCTTCACAAATCTTCAAAGTAGAAAGGCTTGAGCATCAAGTTCACATCAAATGTTACAAACTGGGATAAACAGCTGCAGAAATTGAGGGTATAATGTAACATAATGGTGGTTAAATGTCCCTGCAACCCGAGTGGAGGTTAACTACATAATTTTTTCTCTGTTTAGTATCATCATTTTGGACATGGGGTTTCAATAGAATCTTCGCAAAGTTCTCTCAGTTGGTGGTGGGTACTAAGCATTACCTAATTCAAACTCGTTAAGACACAAGTAGGTGGGCGTTCCAACTTGAAGTCTCACTCGTTCGAGTTTAGGGAAGAAAAACATCAAACTTATAATTAAGTTTTTTAAACCAGTCAAAAGTTTGAATGTACTCGTCAGCAATTTTGAACTTGATAAAAAACACTGTCTTGTTTTATTTTTAATGTGAATATTGTATCGGTTAACTTCGAGACATTTTTATGTTCCGTATGAAATTTAAATTCGAATACATATTTCAATCATATTTCTAATTATTAACTTATTTCAATCTGATAAACTAAACAACTTAACATCCATTATCAAAACCATTTTTTACATTTGAAGAGAGAAAATTATATATAGAAAGAGATGTTGAATATTACAACAA

mRNA sequence

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG

Coding sequence (CDS)

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCATTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAG
BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.2e-08
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQ---SDFALTMSLLTR 123
           N L+  LCL   L  A+SLL   + +    + ++   L + L  Q   +D    +S +  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 124 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
             +H N  +YS     +LIS   K  K++EA+ L+  M   G  CKP   VY  L+ GL 
Sbjct: 356 RGYHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLC 415

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAME 226
           R+G   +A ++L  MI S  +P+    + + +   K  +  EA++
Sbjct: 416 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP444_ARATH (Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1

Query: 138 LISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMID 197
           LIS++CK  +  EA+++F  M R G  CKP+   + +LI+GL        AL +LR+MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 198 SNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVG 235
             +V +    N +  + L+   I EA +  + + F G
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PPR91_ARATH (Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=3 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 1.4e-06
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           N L+  L LHN  S A++L+   +        ++  V+ + L  + D  L  +LL ++  
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  L+Y+T     +I   CK +   +AL LF  M   G   +P    Y +LI+ L 
Sbjct: 250 GKLEPGVLIYNT-----IIDGLCKYKHMDDALNLFKEMETKG--IRPNVVTYSSLISCLC 309

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
             G   DA ++L +MI+  + PD    + +  + +KE  + EA +  D +
Sbjct: 310 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP437_ARATH (Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 1.8e-06
Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           ++L+   C    L TA+S L   + T   L     + L +      D +     +  +  
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMIN 465

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  + Y     T L+  YC + K  +AL+L+H M   G    P    + TL++GL+
Sbjct: 466 KKLEPTVVTY-----TSLMGGYCSKGKINKALRLYHEMT--GKGIAPSIYTFTTLLSGLF 525

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEF 227
           R G+  DA+K+   M + N+ P+    N +     +E  + +A EF
Sbjct: 526 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564

BLAST of CSPI01G09980.1 vs. Swiss-Prot
Match: PP102_ARATH (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-06
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1

Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL---K 125
           L+  L LHN  S A++L+   +      + ++  V+ + L  + D  L  +LL ++   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255

Query: 126 HHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRK 185
              N ++YST     +I S CK R   +AL LF  M   G   +P    Y +LI+ L   
Sbjct: 256 IEANVVIYST-----VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNY 315

Query: 186 GMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
               DA ++L +MI+  + P+    N +  + +KE  + EA +  D +
Sbjct: 316 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 8.8e-138
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1

Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

BLAST of CSPI01G09980.1 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.6e-54
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1

Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNW 211
           EALK+F+W++RPGSPC  +ERV + L+ G  + GM  +ALKVLR M+ +N+VP CDL+ W
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKW 203

Query: 212 VFRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           V++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 VYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1)

HSP 1 Score: 189.5 bits (480), Expect = 5.1e-45
Identity = 107/235 (45.53%), Postives = 151/235 (64.26%), Query Frame = 1

Query: 26  PAILSPFSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLL 85
           P  + PF+    F + S S+ I    N+  +LT  ELT+INLL+PRLCL +HL+TAI L 
Sbjct: 20  PFAIYPFARQ--FCASSSSSEIEKSKNSELSLTQQELTKINLLIPRLCLSDHLTTAIHLT 79

Query: 86  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 145
             +LLTNP   S+S S+L H L SQ D A +MS LT L+H P    + TPI TMLI+SY 
Sbjct: 80  TTSLLTNPPQKSISFSILIHFLTSQPDMAKSMSFLTILRHTPQVHCHLTPITTMLITSYV 139

Query: 146 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPD 205
           K+R+ KEALK++ WM RPGSPCK E  VY+ L+      G+  + L++L++M+    VP 
Sbjct: 140 KKRRPKEALKVYQWMQRPGSPCKVERIVYEVLVNRFCGFGLVLEGLRILKDMVAVGFVPK 199

Query: 206 CDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNWID 259
             LR  V+RSLL+EA + +A+E N+AL    + +  + +++V ELL+ II NW +
Sbjct: 200 NGLRRTVYRSLLREARVGKAVELNEALYGCFEDDNGEGVKKVRELLDSIIGNWTE 252

BLAST of CSPI01G09980.1 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2)

HSP 1 Score: 187.2 bits (474), Expect = 2.5e-44
Identity = 110/233 (47.21%), Postives = 154/233 (66.09%), Query Frame = 1

Query: 29  LSPFSSS-----SSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLL 88
           +SPFS       SS I D P  S  ++  TTLT +E+T+INLL+PRLCL NHL+TAI L+
Sbjct: 25  ISPFSHQLFALFSSSI-DIPKLSTNSEVVTTLTQEEVTKINLLIPRLCLLNHLTTAIQLI 84

Query: 89  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 148
             +LL NP   SLS S+L+HSL SQ D    MSLLT L+H P A  + +P+ TMLI+SY 
Sbjct: 85  TTSLLANPPPKSLSFSILTHSLTSQPDMTKPMSLLTILRHTPQAHSHLSPMNTMLITSYI 144

Query: 149 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPD 208
           K+++ KEALK+++WMLRPGSPCK E+ V+  L+ GL   G   + LKVL++M+    +P 
Sbjct: 145 KKKRPKEALKVYNWMLRPGSPCKVEKIVFCVLVNGLCEIGWVLEGLKVLKDMVSVGFLPI 204

Query: 209 CDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNW 257
             L+  V+RSLL EA + EA+E + AL    +  + +  ++V +LL+ +I NW
Sbjct: 205 GGLKERVYRSLLSEARVKEAVELDKALCDCFEDVSGEGGKKVIDLLDSLIRNW 256

BLAST of CSPI01G09980.1 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1)

HSP 1 Score: 172.2 bits (435), Expect = 8.4e-40
Identity = 103/229 (44.98%), Postives = 144/229 (62.88%), Query Frame = 1

Query: 32  FSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS S S I +     + T+P    TL+ +++++INLL+PRLCL NHL+TAI L    LLT
Sbjct: 29  FSYSFSAIPNLTDTYLNTRPKNFPTLSQEQVSKINLLIPRLCLSNHLTTAIQLTTTALLT 88

Query: 92  N--PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRK 151
           N  P+  SLS+S+L HSL  Q D  L+MSLLTRL H P A  + TP+ TMLI+SY K+ +
Sbjct: 89  NASPNPKSLSVSILIHSLTLQPDLKLSMSLLTRLNHIPQAHPHLTPVSTMLIASYLKKGR 148

Query: 152 SKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLR 211
            K+ALK+++WM RPGSPC  ++  Y  L+      G+  + L VLR+M+  +L+P   LR
Sbjct: 149 HKDALKVYNWMRRPGSPCTVDKDAYGILVGRFCASGVVLEGLMVLRDMLKVHLLPGEGLR 208

Query: 212 NWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRVSELLNRIITNW 257
             V RSLL+EA + EA  F + L  V     +  L +V +LL+ +I NW
Sbjct: 209 KKVVRSLLREARVREAEAFEELLPCVA---CVGALNKVLDLLDHLIGNW 254

BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT4G20090.1 (AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 60.1 bits (144), Expect = 2.4e-09
Identity = 48/165 (29.09%), Postives = 79/165 (47.88%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQ---SDFALTMSLLTR 123
           N L+  LCL   L  A+SLL   + +    + ++   L + L  Q   +D    +S +  
Sbjct: 296 NTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEE 355

Query: 124 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
             +H N  +YS     +LIS   K  K++EA+ L+  M   G  CKP   VY  L+ GL 
Sbjct: 356 RGYHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLC 415

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAME 226
           R+G   +A ++L  MI S  +P+    + + +   K  +  EA++
Sbjct: 416 REGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQ 453

BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 32/97 (32.99%), Postives = 52/97 (53.61%), Query Frame = 1

Query: 138 LISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMID 197
           LIS++CK  +  EA+++F  M R G  CKP+   + +LI+GL        AL +LR+MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 198 SNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVG 235
             +V +    N +  + L+   I EA +  + + F G
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQG 559

BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT1G62670.1 (AT1G62670.1 rna processing factor 2)

HSP 1 Score: 55.1 bits (131), Expect = 7.6e-08
Identity = 47/170 (27.65%), Postives = 80/170 (47.06%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           N L+  L LHN  S A++L+   +        ++  V+ + L  + D  L  +LL ++  
Sbjct: 190 NTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQ 249

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  L+Y+T     +I   CK +   +AL LF  M   G   +P    Y +LI+ L 
Sbjct: 250 GKLEPGVLIYNT-----IIDGLCKYKHMDDALNLFKEMETKG--IRPNVVTYSSLISCLC 309

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
             G   DA ++L +MI+  + PD    + +  + +KE  + EA +  D +
Sbjct: 310 NYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352

BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT5G59900.1 (AT5G59900.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 54.7 bits (130), Expect = 9.9e-08
Identity = 43/166 (25.90%), Postives = 73/166 (43.98%), Query Frame = 1

Query: 64  NLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL-- 123
           ++L+   C    L TA+S L   + T   L     + L +      D +     +  +  
Sbjct: 406 SILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAAEGFMAEMIN 465

Query: 124 -KHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 183
            K  P  + Y     T L+  YC + K  +AL+L+H M   G    P    + TL++GL+
Sbjct: 466 KKLEPTVVTY-----TSLMGGYCSKGKINKALRLYHEMT--GKGIAPSIYTFTTLLSGLF 525

Query: 184 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEF 227
           R G+  DA+K+   M + N+ P+    N +     +E  + +A EF
Sbjct: 526 RAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEF 564

BLAST of CSPI01G09980.1 vs. TAIR10
Match: AT1G63400.1 (AT1G63400.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.9 bits (128), Expect = 1.7e-07
Identity = 47/168 (27.98%), Postives = 80/168 (47.62%), Query Frame = 1

Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRL---K 125
           L+  L LHN  S A++L+   +      + ++  V+ + L  + D  L  +LL ++   K
Sbjct: 196 LIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAK 255

Query: 126 HHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRK 185
              N ++YST     +I S CK R   +AL LF  M   G   +P    Y +LI+ L   
Sbjct: 256 IEANVVIYST-----VIDSLCKYRHEDDALNLFTEMENKG--VRPNVITYSSLISCLCNY 315

Query: 186 GMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDAL 231
               DA ++L +MI+  + P+    N +  + +KE  + EA +  D +
Sbjct: 316 ERWSDASRLLSDMIERKINPNVVTFNALIDAFVKEGKLVEAEKLYDEM 356

BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 497.7 bits (1280), Expect = 1.3e-137
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1

Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 474.6 bits (1220), Expect = 1.1e-130
Identity = 245/258 (94.96%), Postives = 252/258 (97.67%), Query Frame = 1

Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIP ILSPFSSSSSFIS SPSASIAT+PNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCL+NHLSTAI+LLHATLLTNPSL SLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALK+FHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240
           RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFR LL+EAMIPEAMEFN+  NFVGDQ+TID
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTID 240

Query: 241 HLRRVSELLNRIITNWID 259
           HLRRVSELLNRIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 224.6 bits (571), Expect = 2.1e-55
Identity = 131/253 (51.78%), Postives = 167/253 (66.01%), Query Frame = 1

Query: 6   QQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINL 65
           QQ+L L   P   + L F       PFSSSSS I+   S    T+  T LT  ++T INL
Sbjct: 8   QQILCLASKPTITQQLSF-------PFSSSSSTIASITSPKPTTQTQT-LTQQDVTNINL 67

Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHP 125
           LLPRLCL ++L+TA  L    LLTNP LHSLSLS+L HS  SQ D A  MSLLTRL+HHP
Sbjct: 68  LLPRLCLSDNLNTATHLTITALLTNPPLHSLSLSILIHSFTSQPDMARPMSLLTRLRHHP 127

Query: 126 NALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMT 185
            +  + TPI TMLI+SY KR++ +EALK+F+WM+RPGSP   +ERV   L+ G  R GM 
Sbjct: 128 PSHSHLTPITTMLIASYFKRKRPREALKVFNWMVRPGSPVVLDERVCGVLVCGFCRNGMV 187

Query: 186 FDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRRV 245
            +AL VLR M+  N+VP CDLR WV+R LL+EA I EA+E N AL+ VGD  + +  R+V
Sbjct: 188 LEALNVLRAMLGVNIVPGCDLRKWVYRGLLREARIKEALELNKALDCVGDGES-EGFRKV 247

Query: 246 SELLNRIITNWID 259
             LL+ +I +W +
Sbjct: 248 LALLDHMIDSWTE 251

BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica])

HSP 1 Score: 219.5 bits (558), Expect = 6.6e-54
Identity = 124/232 (53.45%), Postives = 160/232 (68.97%), Query Frame = 1

Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNW 211
           EALK+F+W++RPGSPC  +ERV + L+ G  + GM  +ALKVLR M+ +N+VP CDL+ W
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKW 203

Query: 212 VFRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           V++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 VYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

BLAST of CSPI01G09980.1 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume])

HSP 1 Score: 217.2 bits (552), Expect = 3.3e-53
Identity = 119/231 (51.52%), Postives = 157/231 (67.97%), Query Frame = 1

Query: 32  FSSSSSFISDSPSASIATKPNT-TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTN 91
           FS+S+S I    +     +  T +LT +E T+INLLLPRLCL NHL TA  L    LLTN
Sbjct: 24  FSTSTSAIDSITAPKPTNQAQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLTN 83

Query: 92  PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKE 151
           P L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K KE
Sbjct: 84  PPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPKE 143

Query: 152 ALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGMTFDALKVLRNMIDSNLVPDCDLRNWV 211
           ALK+F+W++RPGSPC  +ERV + L+ G  + GM  + LKVLR M+ +N+VP CDL+ WV
Sbjct: 144 ALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEVLKVLRAMLSTNIVPGCDLKKWV 203

Query: 212 FRSLLKEAMIPEAMEFNDALNFVGDQNTIDH---LRRVSELLNRIITNWID 259
           ++ LL+EA I EA+E N+AL  VGD+   D    +++V  LL+ +I NW +
Sbjct: 204 YKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PP327_ARATH4.2e-0829.09Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN... [more]
PP444_ARATH1.0e-0632.99Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidop... [more]
PPR91_ARATH1.4e-0627.65Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidop... [more]
PP437_ARATH1.8e-0625.90Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis th... [more]
PP102_ARATH3.0e-0627.98Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana GN... [more]
Match NameE-valueIdentityDescription
A0A0A0LRQ9_CUCSA8.8e-138100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1[more]
M5WIJ3_PRUPE4.6e-5453.45Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1[more]
A0A067LG57_JATCU5.1e-4545.53Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1[more]
B9GN11_POPTR2.5e-4447.21Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2[more]
A0A061DVU2_THECC8.4e-4044.98Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_... [more]
Match NameE-valueIdentityDescription
AT4G20090.12.4e-0929.09 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT5G64320.15.8e-0832.99 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G62670.17.6e-0827.65 rna processing factor 2[more]
AT5G59900.19.9e-0825.90 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT1G63400.11.7e-0727.98 Pentatricopeptide repeat (PPR) superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449474047|ref|XP_004154059.1|1.3e-137100.00PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]
gi|659067591|ref|XP_008440255.1|1.1e-13094.96PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-... [more]
gi|764554710|ref|XP_004293884.2|2.1e-5551.78PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp... [more]
gi|595865128|ref|XP_007211897.1|6.6e-5453.45hypothetical protein PRUPE_ppa010317mg [Prunus persica][more]
gi|645238977|ref|XP_008225928.1|3.3e-5351.52PREDICTED: uncharacterized protein LOC103325527 [Prunus mume][more]
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CSPI01G09980CSPI01G09980gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CSPI01G09980.1CSPI01G09980.1-proteinpolypeptide


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09980.1.utr5p1CSPI01G09980.1.utr5p1five_prime_UTR


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09980.1.cds1CSPI01G09980.1.cds1CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
CSPI01G09980.1.utr3p1CSPI01G09980.1.utr3p1three_prime_UTR
CSPI01G09980.1.utr3p2CSPI01G09980.1.utr3p2three_prime_UTR


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 171..199
score: 0.0011coord: 136..156
score: 7.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 136..156
score: 6.6E-4coord: 171..204
score: 5.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 168..202
score: 9.657coord: 131..165
score: 9
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 12..226
score: 1.0