Cla97C03G055280 (gene) Watermelon (97103) v2

Overview
NameCla97C03G055280
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionPentatricopeptide repeat-containing protein, putative
LocationCla97Chr03 : 4249639 .. 4250415 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

mRNA sequence

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

Coding sequence (CDS)

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACACCGTCTTCCACTTCCACCACAGCTCCTCCACTCTCAAATTCCCGCAATTCATTCTCCATGTTCCTCTTCTTCCTCCTCCATTTCCGATTCTGCTTCAGCTTTCATAGCCACCAAACCCAATACGACTCTGACCCATGACGACCTTACAAACATCAACCTCCTTCTTCCTCGTCTCTGTCTCTACAACCACCACTCTACTGCAATCCAACTTCTTGACGCCACTCTCCTCACAAATCCTTCACTTCAATCTCTTCCCCTTTCAATTCTCTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCCCTCCTCACCCGTCTCTACCACCATCGGAATGCGCTTCTTTACTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTGTAAACGGCGGAAATCCAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCGGGGTCGCCATGTAAGCCGGATGAGAGGGTTTACAAAACCCTAATTGCAGGACTTTGTAGGAAGGGGATGACACTTGATGCATTGAAGGTTCTCAGGAACATGATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAG

Protein sequence

MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNWID
Homology
[Close]
BLAST of Cla97C03G055280 vs. NCBI nr
Match: XP_004154059.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >XP_011652353.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >KGN64453.1 hypothetical protein Csa_1G051900 [Cucumis sativus])

HSP 1 Score: 412.9 bits (1060), Expect = 7.9e-112
Identity = 218/258 (84.50%), Postives = 230/258 (89.15%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK IRQ+LL L RLPL P+LL  QIPAI SP SSSSS ISDS SA IATKPNTTLTHD+L
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCL+NH STAI LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYSTPI+TMLI SYCKRRKSKEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGMT DALKVLRNMIDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLR+VSELL+RIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]
BLAST of Cla97C03G055280 vs. NCBI nr
Match: XP_023520260.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 406.8 bits (1044), Expect = 5.7e-110
Identity = 215/259 (83.01%), Postives = 232/259 (89.58%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSP-CSSSSSSISDSASAFIATKPNTTLTHDD 60
           MKTIRQRLLPLHR PLPPQL+H QIPAI +P  SSSSSS+ DSA    A+K NTTLT D+
Sbjct: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAIGTPFSSSSSSSVYDSA----ASKINTTLTQDE 60

Query: 61  LTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLT 120
           LT I+LLLPRLCL NHHSTAI LLDA LLTN SLQSLPLSILSHSLASQSDFALTMSLLT
Sbjct: 61  LTKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLLT 120

Query: 121 RLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGL 180
           RL HHRNALLYS+PIITMLIFSYCK+RK KEALKIFHWMLRPGSPCKPDERVYKTLIAGL
Sbjct: 121 RLNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAGL 180

Query: 181 CRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTK 240
           CRKGM LDALK+L+NMIDSNLVPD  LR+WVFRCLLREAMIGEA EL+ETLN +GD+NT 
Sbjct: 181 CRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNTS 240

Query: 241 DHLRKVSELLDRIITNWID 259
           +HL+KVSELLD II NWI+
Sbjct: 241 EHLKKVSELLDGIINNWIE 255

[Close]
BLAST of Cla97C03G055280 vs. NCBI nr
Match: XP_022923926.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923927.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923928.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 402.1 bits (1032), Expect = 1.4e-108
Identity = 213/260 (81.92%), Postives = 229/260 (88.08%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCS--SSSSSISDSASAFIATKPNTTLTHD 60
           MKTI QRLLPLHRLPLPPQL+H QIPAI +P S  SSSSS+ DSA    A+K NTTLT D
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAIGTPFSFFSSSSSVYDSA----ASKINTTLTQD 60

Query: 61  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           +LT I+LLLPRLC YNHHSTAI LLD  LLTN SLQSLPLSILSHSLASQSDFALTMSLL
Sbjct: 61  ELTKISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 120

Query: 121 TRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180
           TRL HHRNALLYS+PIITMLI SY K+RK KEALKIFHWMLRPGSPCKPDERVYKTLIAG
Sbjct: 121 TRLKHHRNALLYSSPIITMLILSYSKQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           LCRKGM LDALK+L+NMIDSNLVPD  LR+WVFRCLLREAMIGEA EL+ETLN +GD+NT
Sbjct: 181 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNT 240

Query: 241 KDHLRKVSELLDRIITNWID 259
            DHLR+VSELLD II NWI+
Sbjct: 241 SDHLRRVSELLDGIINNWIE 256

[Close]
BLAST of Cla97C03G055280 vs. NCBI nr
Match: XP_023000755.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000756.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000757.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 399.4 bits (1025), Expect = 9.0e-108
Identity = 212/258 (82.17%), Postives = 227/258 (87.98%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MKTIRQRLLPL RLPLPPQL+H QIPAI +P SSSSSS S   SA  A+K NTTLT D+L
Sbjct: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSSSSSVYDSA--ASKINTTLTQDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T I+LLLPRLCLYNHHSTAI LLD  LLTN SLQSLPLSILSHSLASQSDFALTMSLLTR
Sbjct: 61  TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HHRNALLYS+PIITMLIFSY K+RKSKEALKIFHWMLRPGSPCKPDE VYKTLIAGLC
Sbjct: 121 LKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLC 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGM LDALK+L+NMIDSNLVPD  LR+WV  CLLREAMIGEA EL+ETLN + D+N  D
Sbjct: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISD 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLRKVSELLDR+I NWI+
Sbjct: 241 HLRKVSELLDRVINNWIE 256

[Close]
BLAST of Cla97C03G055280 vs. NCBI nr
Match: XP_022137315.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momordica charantia])

HSP 1 Score: 357.1 bits (915), Expect = 5.1e-95
Identity = 195/251 (77.69%), Postives = 210/251 (83.67%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MKTIRQR LPL RL LPPQ + +QIPAI SP   SSSSISDS SA +A+K NTTLT D+L
Sbjct: 1   MKTIRQR-LPLQRLQLPPQFIQNQIPAIDSP-FYSSSSISDSESASVASKTNTTLTQDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCL++HHSTAI LLDA LLTNPSLQSLPLSIL+HSLASQSDF   MSLLTR
Sbjct: 61  TKINLLLPRLCLHSHHSTAITLLDAALLTNPSLQSLPLSILAHSLASQSDFTHAMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HHRNA LYS+PIITMLI SYCKRRK +EALKIFHWM RPGSPC PDE+VY TLIAGLC
Sbjct: 121 LKHHRNANLYSSPIITMLIHSYCKRRKFREALKIFHWMGRPGSPCNPDEKVYATLIAGLC 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           R GM LDALKVLRNMI SNLVPD +LRNWVFR LLREAMIGEAME NE L+ V DQN  +
Sbjct: 181 RHGMVLDALKVLRNMIGSNLVPDSNLRNWVFRSLLREAMIGEAMEFNEILDRVEDQNLSN 240

Query: 241 HLRKVSELLDR 252
           HLRK  E  D+
Sbjct: 241 HLRKGEESSDQ 249

[Close]
BLAST of Cla97C03G055280 vs. TrEMBL
Match: tr|A0A0A0LRQ9|A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 5.2e-112
Identity = 218/258 (84.50%), Postives = 230/258 (89.15%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK IRQ+LL L RLPL P+LL  QIPAI SP SSSSS ISDS SA IATKPNTTLTHD+L
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T INLLLPRLCL+NH STAI LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L HH NALLYSTPI+TMLI SYCKRRKSKEALK+FHWMLRPGSPCKP+ERVYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           RKGMT DALKVLRNMIDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRIITNWID 259
           HLR+VSELL+RIITNWID
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]
BLAST of Cla97C03G055280 vs. TrEMBL
Match: tr|A0A2N9FI41|A0A2N9FI41_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 2.5e-53
Identity = 132/258 (51.16%), Postives = 165/258 (63.95%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK+++ +   L  LP  P +     P+I    SS+ +S+  + +       N TLT  + 
Sbjct: 3   MKSLKLKHRQLLSLPSKPIISLLFQPSIAPFSSSTETSLPSNPTT------NATLTQQEF 62

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           TNINLLLPRLCL +H STAI L    LLTNP  +SL LSIL HSL SQ D AL+MSLLTR
Sbjct: 63  TNINLLLPRLCLSDHLSTAINLTTTALLTNPPPKSLSLSILIHSLTSQPDMALSMSLLTR 122

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L H+  +  + TPI TMLI SY K+ K KEA K+F+WM+RPGSPC  D +V   L+ G C
Sbjct: 123 LKHNPISQTHLTPITTMLIASYFKQLKPKEAFKVFNWMVRPGSPCVLDVKVCGILVNGFC 182

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKD 240
           R GM L+ALKVLR M+  NLVP+     WV+R LLREA I EAMELNE L  V D    +
Sbjct: 183 RIGMVLEALKVLREMVGVNLVPEREFAKWVYRGLLREARIKEAMELNEALGLVWDVGGDE 242

Query: 241 HLRKVSELLDRIITNWID 259
            ++KV  LLD +I NWI+
Sbjct: 243 AMKKVLGLLDCMIGNWIE 254

[Close]
BLAST of Cla97C03G055280 vs. TrEMBL
Match: tr|M5WIJ3|M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 4.2e-53
Identity = 133/263 (50.57%), Postives = 167/263 (63.50%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTT--LTHD 60
           MK++++   PLH L L  +        I     S+S+S  DS +A   T    T  LT +
Sbjct: 1   MKSVQK---PLHILSLASK------STITPRTFSTSTSAIDSITAPKPTNQTQTQSLTQE 60

Query: 61  DLTNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           + T INLLLPRLCL NH  TA  L    LLTNP L+SL LSIL HS  SQ D A  MSLL
Sbjct: 61  EHTKINLLLPRLCLLNHLDTATHLTITALLTNPPLKSLSLSILIHSFTSQPDMARPMSLL 120

Query: 121 TRLYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180
           TRL H+  +  Y TPI TM I SY K+ K KEALK+F+W++RPGSPC  DERV + L+ G
Sbjct: 121 TRLRHNPPSHPYLTPITTMFIASYFKKNKPKEALKMFNWLVRPGSPCVLDERVCEVLVNG 180

Query: 181 LCRKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
            C+ GM L+ALKVLR M+ +N+VP C L+ WV++ LLREA I EA+ELNE L  VGD+  
Sbjct: 181 FCKNGMVLEALKVLRAMLSTNIVPGCDLKKWVYKVLLREARIKEAVELNEALGCVGDREK 240

Query: 241 KDH---LRKVSELLDRIITNWID 259
            D    ++KV  LLD +I NW +
Sbjct: 241 GDESECVKKVLALLDHMIGNWAE 254

[Close]
BLAST of Cla97C03G055280 vs. TrEMBL
Match: tr|A0A2P6Q7I4|A0A2P6Q7I4_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.4e-51
Identity = 129/261 (49.43%), Postives = 158/261 (60.54%), Query Frame = 0 

Query: 1   MKTIRQRLLPLHRLPLPPQLLHSQIPAIHSPCSSSSSSISDSASAFIATKPNTTLTHDDL 60
           MK++ Q+   +  L   P +    IP       SSSS+I    S             +DL
Sbjct: 1   MKSV-QKAQQIFSLASKPTITQLSIP------FSSSSTIDSITSTXXXXXXXXXXXQEDL 60

Query: 61  TNINLLLPRLCLYNHHSTAIQLLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           TNINLLLPRLCL  H  T+  L    LLTNP L SL LSIL HS  SQ D A  MSLLTR
Sbjct: 61  TNINLLLPRLCLSGHLDTSTHLTITALLTNPPLHSLSLSILIHSFTSQPDMARPMSLLTR 120

Query: 121 LYHHRNALLYSTPIITMLIFSYCKRRKSKEALKIFHWMLRPGSPCKPDERVYKTLIAGLC 180
           L H+  +  Y TPI TMLI SY KR++ +EALK+F+WM+RPGSP   DERV   L+ G C
Sbjct: 121 LRHNPPSHSYLTPITTMLIASYFKRKRPREALKLFNWMVRPGSPVVLDERVCGVLVGGFC 180

Query: 181 RKGMTLDALKVLRNMIDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQN--- 240
           R GM L+AL VLR M+ +++VP C+LR WV+R LLREA I EA+ELNE L+ VGD     
Sbjct: 181 RNGMVLEALNVLRAMLGASIVPGCNLRKWVYRGLLREARIREALELNEALDCVGDSEKGC 240

Query: 241 TKDHLRKVSELLDRIITNWID 259
             +  RKV  LLD +I  W +
Sbjct: 241 VSEGFRKVLALLDHMIDKWTE 254

[Close]
BLAST of Cla97C03G055280 vs. TrEMBL
Match: tr|A0A1Q3C446|A0A1Q3C446_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18526 PE=4 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 5.7e-50
Identity = 115/226 (50.88%), Postives = 149/226 (65.93%), Query Frame = 0 

Query: 31  PCSSSSSSISDSASAFIATKPNTTLTHDDLTNINLLLPRLCLYNHHSTAIQLLDATLLTN 90
           P SSSSS         + T  N  LT  +LT INLL+PRLCL+NH +TAI L+   LLTN
Sbjct: 30  PSSSSSSEAPTCLKPKLTTTSNLKLTQQELTKINLLIPRLCLFNHLTTAINLITTALLTN 89

Query: 91  PSLQSLPLSILSHSLASQSDFALTMSLLTRLYHHRNALLYSTPIITMLIFSYCKRRKSKE 150
           P  +SL LSIL+HSLASQ D  L MSLLTRL H   A  + T I TMLI S+ ++ + K+
Sbjct: 90  PPPKSLSLSILTHSLASQPDLTLPMSLLTRLKHIPQAHPHLTHITTMLITSFLRQGRPKD 149

Query: 151 ALKIFHWMLRPGSPCKPDERVYKTLIAGLCRKGMTLDALKVLRNMIDSNLVPDCHLRNWV 210
           ALK++HWM+RPGS C+ +  VY  L+ G C KG+ L+AL+VLR+M+   L+P   LR  V
Sbjct: 150 ALKVYHWMIRPGSSCEVEPVVYGILVHGFCGKGLVLEALRVLRDMVGIRLMPGVGLRKTV 209

Query: 211 FRCLLREAMIGEAMELNETLNFVGDQNTKDHLRKVSELLDRIITNW 257
           FR LLREA + EA+E +E L  VG     + ++KV +LLD +I NW
Sbjct: 210 FRSLLREARVKEAVEFDEALKCVGKGCEGEVVKKVVDLLDHMIANW 255

The following BLAST results are available for this feature:
BLAST of Cla97C03G055280 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004154059.17.9e-11284.50PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]
XP_023520260.15.7e-11083.01pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
XP_022923926.11.4e-10881.92pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
XP_023000755.19.0e-10882.17pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur... [more]
XP_022137315.15.1e-9577.69pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momor... [more]
BLAST of Cla97C03G055280 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LRQ9|A0A0A0LRQ9_CUCSA5.2e-11284.50Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1[more]
tr|A0A2N9FI41|A0A2N9FI41_FAGSY2.5e-5351.16Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1[more]
tr|M5WIJ3|M5WIJ3_PRUPE4.2e-5350.57Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1[more]
tr|A0A2P6Q7I4|A0A2P6Q7I4_ROSCH1.4e-5149.43Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 P... [more]
tr|A0A1Q3C446|A0A1Q3C446_CEPFO5.7e-5050.88PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus foll... [more]
BLAST of Cla97C03G055280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C03G055280 vs. TAIR10
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G055280.1Cla97C03G055280.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 171..204
e-value: 4.8E-8
score: 30.7
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 136..181
e-value: 5.5E-9
score: 36.0
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 168..202
score: 11.455
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 131..165
score: 8.342
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3DG3DSA:1.25.40.10coord: 89..233
e-value: 1.8E-19
score: 71.7
NoneNo IPR availablePANTHERPTHR44149FAMILY NOT NAMEDcoord: 53..226

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G055280Cla002654Watermelon (97103) v1wmwmbB124
Cla97C03G055280Csa1G051900Cucumber (Chinese Long) v2cuwmbB032
Cla97C03G055280MELO3C002395Melon (DHL92) v3.5.1mewmbB156
Cla97C03G055280ClCG03G004120Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G055280CSPI01G09980Wild cucumber (PI 183967)cpiwmbB032
Cla97C03G055280Cucsa.134620Cucumber (Gy14) v1cgywmbB221
Cla97C03G055280CmaCh13G008370Cucurbita maxima (Rimu)cmawmbB227
Cla97C03G055280CmoCh13G008660Cucurbita moschata (Rifu)cmowmbB211
Cla97C03G055280Lsi02G005350Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G055280Carg07629Silver-seed gourdcarwmbB1060
Cla97C03G055280CsaV3_1G010050Cucumber (Chinese Long) v3cucwmbB030
Cla97C03G055280BhiUN316G33Wax gourdwgowmbB448
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G055280Silver-seed gourdcarwmbB0517
Cla97C03G055280Cucumber (Gy14) v2cgybwmbB032
Cla97C03G055280Cucurbita maxima (Rimu)cmawmbB417
Cla97C03G055280Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G055280Melon (DHL92) v3.6.1medwmbB145