BhiUN316G33 (gene) Wax gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	BhiUN316G33
Type	gene
Organism	Benincasa hispida (Wax gourd)
Description	Pentatricopeptide repeat
Location	Contig316 : 467861 .. 468643 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAGAATAAGGCAGCGGCTTCTTCCCCTACACCGTCTTCCACTCCCACCACAGCTCCTCTGCTATCAAATTCCCGCCATTCCTTCTTCTTCTTCTTCTTCTTCCTCCATTTCCGATTCTGCTCCTGCTTCTGCTTCCATAGCTTCCGAACCCAATACCACTCTGACCCATGACGAGCTTATAACAAAGATCAACCTCCTTCTTCCTCGTCTCTGTTTCTATAACCACCACTCTACTGCAATCGCCCTTCTGGACGCGACTCTCCTTACAAATCCATCACTTCAATCTCTTCCCCTTTCAATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCTCTCCTCACCCGTCTCAACCACCATCGGAATGCCCTTCTTTATTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTCTAAGCGGCGGAAATCCAAGGACGCCTTGAAGATTTTCCATTGGATGCTGAGACCGGGGTCGCCGTGTAAGCCGGATGAGAGGGTTTATAATACCCTAATTGCGGGACTTTGCAGGAAGGGGATGACACTTGATGCTTTGAAGGTTCTCAGGAACATGGTAAATTCTAATTTGGTTCCGGATTGCGATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGTGATCAGAATACCAGTGACCATCTGAGAAAGGTGTCGGAATTGTTGGATCGTATCATCACCAATTGGATAGACTAG

mRNA sequence

ATGAAGAGAATAAGGCAGCGGCTTCTTCCCCTACACCGTCTTCCACTCCCACCACAGCTCCTCTGCTATCAAATTCCCGCCATTCCTTCTTCTTCTTCTTCTTCTTCCTCCATTTCCGATTCTGCTCCTGCTTCTGCTTCCATAGCTTCCGAACCCAATACCACTCTGACCCATGACGAGCTTATAACAAAGATCAACCTCCTTCTTCCTCGTCTCTGTTTCTATAACCACCACTCTACTGCAATCGCCCTTCTGGACGCGACTCTCCTTACAAATCCATCACTTCAATCTCTTCCCCTTTCAATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCTCTCCTCACCCGTCTCAACCACCATCGGAATGCCCTTCTTTATTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTCTAAGCGGCGGAAATCCAAGGACGCCTTGAAGATTTTCCATTGGATGCTGAGACCGGGGTCGCCGTGTAAGCCGGATGAGAGGGTTTATAATACCCTAATTGCGGGACTTTGCAGGAAGGGGATGACACTTGATGCTTTGAAGGTTCTCAGGAACATGGTAAATTCTAATTTGGTTCCGGATTGCGATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGTGATCAGAATACCAGTGACCATCTGAGAAAGGTGTCGGAATTGTTGGATCGTATCATCACCAATTGGATAGACTAG

Coding sequence (CDS)

ATGAAGAGAATAAGGCAGCGGCTTCTTCCCCTACACCGTCTTCCACTCCCACCACAGCTCCTCTGCTATCAAATTCCCGCCATTCCTTCTTCTTCTTCTTCTTCTTCCTCCATTTCCGATTCTGCTCCTGCTTCTGCTTCCATAGCTTCCGAACCCAATACCACTCTGACCCATGACGAGCTTATAACAAAGATCAACCTCCTTCTTCCTCGTCTCTGTTTCTATAACCACCACTCTACTGCAATCGCCCTTCTGGACGCGACTCTCCTTACAAATCCATCACTTCAATCTCTTCCCCTTTCAATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTTGCCCTCACAATGTCTCTCCTCACCCGTCTCAACCACCATCGGAATGCCCTTCTTTATTCAACCCCTATCATCACCATGCTTATTTTCTCTTATTCTAAGCGGCGGAAATCCAAGGACGCCTTGAAGATTTTCCATTGGATGCTGAGACCGGGGTCGCCGTGTAAGCCGGATGAGAGGGTTTATAATACCCTAATTGCGGGACTTTGCAGGAAGGGGATGACACTTGATGCTTTGAAGGTTCTCAGGAACATGGTAAATTCTAATTTGGTTCCGGATTGCGATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGTGATCAGAATACCAGTGACCATCTGAGAAAGGTGTCGGAATTGTTGGATCGTATCATCACCAATTGGATAGACTAG

Protein sequence

MKRIRQRLLPLHRLPLPPQLLCYQIPAIPSSSSSSSSISDSAPASASIASEPNTTLTHDELITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLLTRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAGLCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTSDHLRKVSELLDRIITNWID

Homology

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BLAST of BhiUN316G33 vs. TAIR10
Match: AT1G56570.1 (Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 45.1 bits (105), Expect = 7.9e-05
Identity = 30/104 (28.85%), Postives = 49/104 (47.12%), Query Frame = 0


Query: 138 TMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAGLCRKGMTLDALKVLRNM 197
           T ++  Y       +A+++F  M+  G   +PD  V+  +++     G+    LK    M
Sbjct: 384 TSMMIGYGSHGYGAEAVELFDKMVSSG--IRPDRIVFMAVLSACRHAGLVEKGLKYFNVM 443

Query: 198 VNS-NLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 241
            +   + PD D+ N V   L R   IGEA EL E + F  D++T
Sbjct: 444 ESEYGINPDRDIYNCVVDLLGRAGKIGEAYELVERMPFKPDEST 485

[Close]

BLAST of BhiUN316G33 vs. TrEMBL
Match: tr|A0A0A0LRQ9|A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 1.9e-101
Identity = 199/260 (76.54%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MKRIRQ+LL L RLPL P+LL +QIPAI                    A++PNTTLTHDE
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAI-LSPFSSSSSFISDSPSASIATKPNTTLTHDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L T+INLLLPRLC +NH STAI+LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLL
Sbjct: 61  L-TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRL HH NALLYSTPI+TMLI SY KRRKSK+ALK+FHWMLRPGSPCKP+ERVY TLIAG
Sbjct: 121 TRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           L RKGMT DALKVLRNM++SNLVPDCDLRNWVFR LL+EAMI EAME N+ LNFVGDQNT
Sbjct: 181 LYRKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNT 240

Query: 241 SDHLRKVSELLDRIITNWID 261
            DHLR+VSELL+RIITNWID
Sbjct: 241 IDHLRRVSELLNRIITNWID 258

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BLAST of BhiUN316G33 vs. TrEMBL
Match: tr|M5WIJ3|M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.1e-53
Identity = 118/209 (56.46%), Postives = 145/209 (69.38%), Query Frame = 0


Query: 55  TLTHDELITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFA 114
           +LT +E  TKINLLLPRLC  NH  TA  L    LLTNP L+SL LSIL HS  SQ D A
Sbjct: 47  SLTQEE-HTKINLLLPRLCLLNHLDTATHLTITALLTNPPLKSLSLSILIHSFTSQPDMA 106

Query: 115 LTMSLLTRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVY 174
             MSLLTRL H+  +  Y TPI TM I SY K+ K K+ALK+F+W++RPGSPC  DERV 
Sbjct: 107 RPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPKEALKMFNWLVRPGSPCVLDERVC 166

Query: 175 NTLIAGLCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNF 234
             L+ G C+ GM L+ALKVLR M+++N+VP CDL+ WV++ LLREA I EA+ELNE L  
Sbjct: 167 EVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDLKKWVYKVLLREARIKEAVELNEALGC 226

Query: 235 VGDQNTSDH---LRKVSELLDRIITNWID 261
           VGD+   D    ++KV  LLD +I NW +
Sbjct: 227 VGDREKGDESECVKKVLALLDHMIGNWAE 254

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BLAST of BhiUN316G33 vs. TrEMBL
Match: tr|A0A2N9FI41|A0A2N9FI41_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 9.4e-53
Identity = 120/208 (57.69%), Postives = 142/208 (68.27%), Query Frame = 0


Query: 53  NTTLTHDELITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSD 112
           N TLT  E  T INLLLPRLC  +H STAI L    LLTNP  +SL LSIL HSL SQ D
Sbjct: 48  NATLTQQE-FTNINLLLPRLCLSDHLSTAINLTTTALLTNPPPKSLSLSILIHSLTSQPD 107

Query: 113 FALTMSLLTRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDER 172
            AL+MSLLTRL H+  +  + TPI TMLI SY K+ K K+A K+F+WM+RPGSPC  D +
Sbjct: 108 MALSMSLLTRLKHNPISQTHLTPITTMLIASYFKQLKPKEAFKVFNWMVRPGSPCVLDVK 167

Query: 173 VYNTLIAGLCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETL 232
           V   L+ G CR GM L+ALKVLR MV  NLVP+ +   WV+R LLREA I EAMELNE L
Sbjct: 168 VCGILVNGFCRIGMVLEALKVLREMVGVNLVPEREFAKWVYRGLLREARIKEAMELNEAL 227

Query: 233 NFVGDQNTSDHLRKVSELLDRIITNWID 261
             V D    + ++KV  LLD +I NWI+
Sbjct: 228 GLVWDVGGDEAMKKVLGLLDCMIGNWIE 254

[Close]

BLAST of BhiUN316G33 vs. TrEMBL
Match: tr|A0A2P6Q7I4|A0A2P6Q7I4_ROSCH (Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.5e-50
Identity = 113/204 (55.39%), Postives = 137/204 (67.16%), Query Frame = 0


Query: 60  ELITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSL 119
           E +T INLLLPRLC   H  T+  L    LLTNP L SL LSIL HS  SQ D A  MSL
Sbjct: 51  EDLTNINLLLPRLCLSGHLDTSTHLTITALLTNPPLHSLSLSILIHSFTSQPDMARPMSL 110

Query: 120 LTRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIA 179
           LTRL H+  +  Y TPI TMLI SY KR++ ++ALK+F+WM+RPGSP   DERV   L+ 
Sbjct: 111 LTRLRHNPPSHSYLTPITTMLIASYFKRKRPREALKLFNWMVRPGSPVVLDERVCGVLVG 170

Query: 180 GLCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQN 239
           G CR GM L+AL VLR M+ +++VP C+LR WV+R LLREA I EA+ELNE L+ VGD  
Sbjct: 171 GFCRNGMVLEALNVLRAMLGASIVPGCNLRKWVYRGLLREARIREALELNEALDCVGDSE 230

Query: 240 ---TSDHLRKVSELLDRIITNWID 261
               S+  RKV  LLD +I  W +
Sbjct: 231 KGCVSEGFRKVLALLDHMIDKWTE 254

[Close]

BLAST of BhiUN316G33 vs. TrEMBL
Match: tr|A0A1Q3C446|A0A1Q3C446_CEPFO (PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_18526 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.8e-49
Identity = 111/206 (53.88%), Postives = 141/206 (68.45%), Query Frame = 0


Query: 53  NTTLTHDELITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSD 112
           N  LT  EL TKINLL+PRLC +NH +TAI L+   LLTNP  +SL LSIL+HSLASQ D
Sbjct: 51  NLKLTQQEL-TKINLLIPRLCLFNHLTTAINLITTALLTNPPPKSLSLSILTHSLASQPD 110

Query: 113 FALTMSLLTRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDER 172
             L MSLLTRL H   A  + T I TMLI S+ ++ + KDALK++HWM+RPGS C+ +  
Sbjct: 111 LTLPMSLLTRLKHIPQAHPHLTHITTMLITSFLRQGRPKDALKVYHWMIRPGSSCEVEPV 170

Query: 173 VYNTLIAGLCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETL 232
           VY  L+ G C KG+ L+AL+VLR+MV   L+P   LR  VFR LLREA + EA+E +E L
Sbjct: 171 VYGILVHGFCGKGLVLEALRVLRDMVGIRLMPGVGLRKTVFRSLLREARVKEAVEFDEAL 230

Query: 233 NFVGDQNTSDHLRKVSELLDRIITNW 259
             VG     + ++KV +LLD +I NW
Sbjct: 231 KCVGKGCEGEVVKKVVDLLDHMIANW 255

[Close]

BLAST of BhiUN316G33 vs. NCBI nr
Match: XP_022923926.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923927.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata] >XP_022923928.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita moschata])

HSP 1 Score: 384.4 bits (986), Expect = 3.0e-103
Identity = 203/260 (78.08%), Postives = 219/260 (84.23%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MK I QRLLPLHRLPLPPQL+  QIPAI                    AS+ NTTLT DE
Sbjct: 1   MKTITQRLLPLHRLPLPPQLVHDQIPAI---GTPFSFFSSSSSVYDSAASKINTTLTQDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L TKI+LLLPRLCFYNHHSTAI LLD  LLTN SLQSLPLSILSHSLASQSDFALTMSLL
Sbjct: 61  L-TKISLLLPRLCFYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRL HHRNALLYS+PIITMLI SYSK+RK K+ALKIFHWMLRPGSPCKPDERVY TLIAG
Sbjct: 121 TRLKHHRNALLYSSPIITMLILSYSKQRKLKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           LCRKGM LDALK+L+NM++SNLVPD DLR+WVFRCLLREAMIGEA EL+ETLN +GD+NT
Sbjct: 181 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNT 240

Query: 241 SDHLRKVSELLDRIITNWID 261
           SDHLR+VSELLD II NWI+
Sbjct: 241 SDHLRRVSELLDGIINNWIE 256

[Close]

BLAST of BhiUN316G33 vs. NCBI nr
Match: XP_023520260.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 380.9 bits (977), Expect = 3.4e-102
Identity = 202/260 (77.69%), Postives = 219/260 (84.23%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MK IRQRLLPLHR PLPPQL+  QIPAI                    AS+ NTTLT DE
Sbjct: 1   MKTIRQRLLPLHRRPLPPQLVHDQIPAI----GTPFSSSSSSSVYDSAASKINTTLTQDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L TKI+LLLPRLC  NHHSTAI LLDA LLTN SLQSLPLSILSHSLASQSDFALTMSLL
Sbjct: 61  L-TKISLLLPRLCLDNHHSTAITLLDAALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRLNHHRNALLYS+PIITMLIFSY K+RK K+ALKIFHWMLRPGSPCKPDERVY TLIAG
Sbjct: 121 TRLNHHRNALLYSSPIITMLIFSYCKQRKFKEALKIFHWMLRPGSPCKPDERVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           LCRKGM LDALK+L+NM++SNLVPD DLR+WVFRCLLREAMIGEA EL+ETLN +GD+NT
Sbjct: 181 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVFRCLLREAMIGEATELSETLNSIGDRNT 240

Query: 241 SDHLRKVSELLDRIITNWID 261
           S+HL+KVSELLD II NWI+
Sbjct: 241 SEHLKKVSELLDGIINNWIE 255

[Close]

BLAST of BhiUN316G33 vs. NCBI nr
Match: XP_004154059.1 (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >XP_011652353.1 PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus] >KGN64453.1 hypothetical protein Csa_1G051900 [Cucumis sativus])

HSP 1 Score: 377.9 bits (969), Expect = 2.8e-101
Identity = 199/260 (76.54%), Postives = 218/260 (83.85%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MKRIRQ+LL L RLPL P+LL +QIPAI                    A++PNTTLTHDE
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAI-LSPFSSSSSFISDSPSASIATKPNTTLTHDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L T+INLLLPRLC +NH STAI+LL ATLLTNPSL SL LS+LSHSLASQSDFALTMSLL
Sbjct: 61  L-TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRL HH NALLYSTPI+TMLI SY KRRKSK+ALK+FHWMLRPGSPCKP+ERVY TLIAG
Sbjct: 121 TRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           L RKGMT DALKVLRNM++SNLVPDCDLRNWVFR LL+EAMI EAME N+ LNFVGDQNT
Sbjct: 181 LYRKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNT 240

Query: 241 SDHLRKVSELLDRIITNWID 261
            DHLR+VSELL+RIITNWID
Sbjct: 241 IDHLRRVSELLNRIITNWID 258

[Close]

BLAST of BhiUN316G33 vs. NCBI nr
Match: XP_023000755.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000756.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima] >XP_023000757.1 pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucurbita maxima])

HSP 1 Score: 377.1 bits (967), Expect = 4.8e-101
Identity = 200/260 (76.92%), Postives = 216/260 (83.08%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MK IRQRLLPL RLPLPPQL+  QIPAI                    AS+ NTTLT DE
Sbjct: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAI---GTPFSSSSSSSSVYDSAASKINTTLTQDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L TKI+LLLPRLC YNHHSTAI LLD  LLTN SLQSLPLSILSHSLASQSDFALTMSLL
Sbjct: 61  L-TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRL HHRNALLYS+PIITMLIFSYSK+RKSK+ALKIFHWMLRPGSPCKPDE VY TLIAG
Sbjct: 121 TRLKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           LCRKGM LDALK+L+NM++SNLVPD DLR+WV  CLLREAMIGEA EL+ETLN + D+N 
Sbjct: 181 LCRKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNI 240

Query: 241 SDHLRKVSELLDRIITNWID 261
           SDHLRKVSELLDR+I NWI+
Sbjct: 241 SDHLRKVSELLDRVINNWIE 256

[Close]

BLAST of BhiUN316G33 vs. NCBI nr
Match: XP_022137315.1 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momordica charantia])

HSP 1 Score: 326.2 bits (835), Expect = 9.8e-86
Identity = 181/253 (71.54%), Postives = 195/253 (77.08%), Query Frame = 0


Query: 1   MKRIRQRLLPLHRLPLPPQLLCYQIPAIPXXXXXXXXXXXXXXXXXXXASEPNTTLTHDE 60
           MK IRQR LPL RL LPPQ +  QIPAI                    AS+ NTTLT DE
Sbjct: 1   MKTIRQR-LPLQRLQLPPQFIQNQIPAI--DSPFYSSSSISDSESASVASKTNTTLTQDE 60

Query: 61  LITKINLLLPRLCFYNHHSTAIALLDATLLTNPSLQSLPLSILSHSLASQSDFALTMSLL 120
           L TKINLLLPRLC ++HHSTAI LLDA LLTNPSLQSLPLSIL+HSLASQSDF   MSLL
Sbjct: 61  L-TKINLLLPRLCLHSHHSTAITLLDAALLTNPSLQSLPLSILAHSLASQSDFTHAMSLL 120

Query: 121 TRLNHHRNALLYSTPIITMLIFSYSKRRKSKDALKIFHWMLRPGSPCKPDERVYNTLIAG 180
           TRL HHRNA LYS+PIITMLI SY KRRK ++ALKIFHWM RPGSPC PDE+VY TLIAG
Sbjct: 121 TRLKHHRNANLYSSPIITMLIHSYCKRRKFREALKIFHWMGRPGSPCNPDEKVYATLIAG 180

Query: 181 LCRKGMTLDALKVLRNMVNSNLVPDCDLRNWVFRCLLREAMIGEAMELNETLNFVGDQNT 240
           LCR GM LDALKVLRNM+ SNLVPD +LRNWVFR LLREAMIGEAME NE L+ V DQN 
Sbjct: 181 LCRHGMVLDALKVLRNMIGSNLVPDSNLRNWVFRSLLREAMIGEAMEFNEILDRVEDQNL 240

Query: 241 SDHLRKVSELLDR 254
           S+HLRK  E  D+
Sbjct: 241 SNHLRKGEESSDQ 249

The following BLAST results are available for this feature:

BLAST of BhiUN316G33 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56570.1	7.9e-05	28.85	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

BLAST of BhiUN316G33 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of BhiUN316G33 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LRQ9\|A0A0A0LRQ9_CUCSA	1.9e-101	76.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G051900 PE=4 SV=1	[more]
tr\|M5WIJ3\|M5WIJ3_PRUPE	1.1e-53	56.46	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_4G119000 PE=4 SV=1	[more]
tr\|A0A2N9FI41\|A0A2N9FI41_FAGSY	9.4e-53	57.69	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14657 PE=4 SV=1	[more]
tr\|A0A2P6Q7I4\|A0A2P6Q7I4_ROSCH	1.5e-50	55.39	Putative pentatricopeptide OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr5g0021391 P...	[more]
tr\|A0A1Q3C446\|A0A1Q3C446_CEPFO	2.8e-49	53.88	PPR domain-containing protein/PPR_1 domain-containing protein OS=Cephalotus foll...	[more]

BLAST of BhiUN316G33 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923926.1	3.0e-103	78.08	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_023520260.1	3.4e-102	77.69	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_004154059.1	2.8e-101	76.54	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
XP_023000755.1	4.8e-101	76.92	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucur...	[more]
XP_022137315.1	9.8e-86	71.54	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Momor...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
BhiUN316M33	BhiUN316M33	mRNA

InterPro

Analysis Name: InterPro Annotations of wax gourd
Date Performed: 2019-11-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 167..198 e-value: 1.2E-10 score: 40.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 173..206 e-value: 2.2E-9 score: 34.9
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 138..158 e-value: 0.97 score: 9.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 133..167 score: 7.476
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 170..204 score: 12.2
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	G3DSA:1.25.40.10		coord: 76..246 e-value: 1.8E-19 score: 71.7
None	No IPR available	PANTHER	PTHR44149	FAMILY NOT NAMED	coord: 58..228

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
BhiUN316G33	Csa1G051900	Cucumber (Chinese Long) v2	cuwgoB026
BhiUN316G33	MELO3C002395	Melon (DHL92) v3.5.1	mewgoB159
BhiUN316G33	ClCG03G004120	Watermelon (Charleston Gray)	wcgwgoB338
BhiUN316G33	CSPI01G09980	Wild cucumber (PI 183967)	cpiwgoB026
BhiUN316G33	Cucsa.134620	Cucumber (Gy14) v1	cgywgoB258
BhiUN316G33	CmaCh13G008370	Cucurbita maxima (Rimu)	cmawgoB0250
BhiUN316G33	CmoCh13G008660	Cucurbita moschata (Rifu)	cmowgoB0243
BhiUN316G33	Lsi02G005350	Bottle gourd (USVL1VR-Ls)	lsiwgoB236
BhiUN316G33	Cp4.1LG20g02840	Cucurbita pepo (Zucchini)	cpewgoB0634
BhiUN316G33	Carg07629	Silver-seed gourd	carwgoB1176
BhiUN316G33	CsaV3_1G010050	Cucumber (Chinese Long) v3	cucwgoB029
BhiUN316G33	Cla002654	Watermelon (97103) v1	wgowmB465
BhiUN316G33	Cla97C03G055280	Watermelon (97103) v2	wgowmbB448

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None