CmaCh13G008370 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh13G008370
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cma_Chr13 : 6973576 .. 6974346 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACGCCGTCTTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACAAAGATCAGCCTCCTTCTTCCTCGTCTCTGTCTCTACAACCATCACTCCACTGCCATCACACTTCTGGACACGGCGCTCCTCACAAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAAGCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTCTAAGCAGCGGAAATCGAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGATGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTCAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTGTATGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAGACTTTGAATTCCATTGCCGATCGGAATATCAGTGACCATCTGAGAAAGGTATCGGAATTGTTGGACCGTGTCATCAACAATTGGATTGAATAG

mRNA sequence

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACGCCGTCTTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACAAAGATCAGCCTCCTTCTTCCTCGTCTCTGTCTCTACAACCATCACTCCACTGCCATCACACTTCTGGACACGGCGCTCCTCACAAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAAGCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTCTAAGCAGCGGAAATCGAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGATGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTCAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTGTATGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAGACTTTGAATTCCATTGCCGATCGGAATATCAGTGACCATCTGAGAAAGGTATCGGAATTGTTGGACCGTGTCATCAACAATTGGATTGAATAG

Coding sequence (CDS)

ATGAAGACAATAAGGCAACGGCTTCTTCCCCTACGCCGTCTTCCACTTCCACCGCAGCTCGTTCACGATCAAATTCCGGCCATTGGTACTCCATTTTCCTCTTCCTCCTCCTCCTCCTCCGTTTATGATTCCGCAGCCAGTAAAATCAATACGACTCTTACCCAAGACGAGCTCACAAAGATCAGCCTCCTTCTTCCTCGTCTCTGTCTCTACAACCATCACTCCACTGCCATCACACTTCTGGACACGGCGCTCCTCACAAATCTTTCACTTCAATCGCTTCCCCTCTCGATTCTTTCCCATTCCCTTGCTTCCCAATCCGATTTCGCCCTCACGATGTCCCTCCTCACCCGTCTCAAGCACCATCGGAATGCGCTTCTCTATTCAAGCCCTATTATCACCATGCTTATTTTCTCTTATTCTAAGCAGCGGAAATCGAAGGAGGCCTTGAAGATTTTCCATTGGATGCTAAGACCAGGGTCGCCATGTAAGCCGGATGAGATGGTTTATAAAACCCTAATCGCGGGACTGTGTAGGAAGGGTATGGTACTTGATGCTTTGAAGATTCTCAAGAACATGATTGACTCGAATTTGGTTCCGGATTACGATCTGAGGAGTTGGGTTTGTATGTGTTTGCTGAGAGAAGCGATGATCGGCGAAGCAACAGAGTTGAGTGAGACTTTGAATTCCATTGCCGATCGGAATATCAGTGACCATCTGAGAAAGGTATCGGAATTGTTGGACCGTGTCATCAACAATTGGATTGAATAG

Protein sequence

MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSSSSSVYDSAASKINTTLTQDELTKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISDHLRKVSELLDRVINNWIE

Homology

[Close]

BLAST of CmaCh13G008370 vs. Swiss-Prot
Match: PP326_ARATH (Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN=At4g19890 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.0e-06
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 126 LLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLD 185
           L+ +    T +I  Y K+     ALK FH M R G  C PD   Y +LI+GLC+K MV +
Sbjct: 529 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHG--CVPDSFTYGSLISGLCKKSMVDE 588

Query: 186 ALKILKNMIDSNLVP 201
           A K+ + MID  L P
Sbjct: 589 ACKLYEAMIDRGLSP 601

[Close]

BLAST of CmaCh13G008370 vs. Swiss-Prot
Match: PP327_ARATH (Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 3.9e-06
Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1


Query: 64  LLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQ---SDFALTMSLLTRLK 123
           L+  LCL      A++LL+  + +      +    L + L  Q   +D    +S +    
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 124 HHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRK 183
           +H N  +YS     +LI    K+ K++EA+ ++  M   G  CKP+ +VY  L+ GLCR+
Sbjct: 358 YHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLCRE 417

Query: 184 GMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATEL 225
           G   +A +IL  MI S  +P+    S +     +  +  EA ++
Sbjct: 418 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454

[Close]

BLAST of CmaCh13G008370 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.5e-92
Identity = 188/258 (72.87%), Postives = 216/258 (83.72%), Query Frame = 1


Query: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSS--SSSVYDSAASKINTTLTQDEL 60
           MK IRQ+LL L+RLPL P+L+  QIPAI +PFSSSSS  S S   S A+K NTTLT DEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL+NH STAI+LL   LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLC 180
           LKHH NALLYS+PI+TMLI SY K+RKSKEALK+FHWMLRPGSPCKP+E VYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISD 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WV   LL+EAMI EA E ++ LN + D+N  D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRVINNWIE 257
           HLR+VSELL+R+I NWI+
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]

BLAST of CmaCh13G008370 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 8.0e-51
Identity = 123/235 (52.34%), Postives = 156/235 (66.38%), Query Frame = 1


Query: 30  TPFSSSSSSSSVYDSAASKINT-----TLTQDELTKISLLLPRLCLYNHHSTAITLLDTA 89
           TP + S+S+S++    A K        +LTQ+E TKI+LLLPRLCL NH  TA  L  TA
Sbjct: 20  TPRTFSTSTSAIDSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITA 79

Query: 90  LLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQR 149
           LLTN  L+SL LSIL HS  SQ D A  MSLLTRL+H+  +  Y +PI TM I SY K+ 
Sbjct: 80  LLTNPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKN 139

Query: 150 KSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDL 209
           K KEALK+F+W++RPGSPC  DE V + L+ G C+ GMVL+ALK+L+ M+ +N+VP  DL
Sbjct: 140 KPKEALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDL 199

Query: 210 RSWVCMCLLREAMIGEATELSETLNSIADRNISDH---LRKVSELLDRVINNWIE 257
           + WV   LLREA I EA EL+E L  + DR   D    ++KV  LLD +I NW E
Sbjct: 200 KKWVYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CmaCh13G008370 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1)

HSP 1 Score: 190.7 bits (483), Expect = 2.3e-45
Identity = 111/225 (49.33%), Postives = 149/225 (66.22%), Query Frame = 1


Query: 32  FSSSSSSSSVYDSAASKINTTLTQDELTKISLLLPRLCLYNHHSTAITLLDTALLTNLSL 91
           F +SSSSS +  S  S++  +LTQ ELTKI+LL+PRLCL +H +TAI L  T+LLTN   
Sbjct: 30  FCASSSSSEIEKSKNSEL--SLTQQELTKINLLIPRLCLSDHLTTAIHLTTTSLLTNPPQ 89

Query: 92  QSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQRKSKEALK 151
           +S+  SIL H L SQ D A +MS LT L+H      + +PI TMLI SY K+R+ KEALK
Sbjct: 90  KSISFSILIHFLTSQPDMAKSMSFLTILRHTPQVHCHLTPITTMLITSYVKKRRPKEALK 149

Query: 152 IFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVCMC 211
           ++ WM RPGSPCK + +VY+ L+   C  G+VL+ L+ILK+M+    VP   LR  V   
Sbjct: 150 VYQWMQRPGSPCKVERIVYEVLVNRFCGFGLVLEGLRILKDMVAVGFVPKNGLRRTVYRS 209

Query: 212 LLREAMIGEATELSETLNSIADRNISDHLRKVSELLDRVINNWIE 257
           LLREA +G+A EL+E L    + +  + ++KV ELLD +I NW E
Sbjct: 210 LLREARVGKAVELNEALYGCFEDDNGEGVKKVRELLDSIIGNWTE 252

[Close]

BLAST of CmaCh13G008370 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 3.6e-43
Identity = 109/225 (48.44%), Postives = 148/225 (65.78%), Query Frame = 1


Query: 32  FSSSSSSSSVYDSAASKINTTLTQDELTKISLLLPRLCLYNHHSTAITLLDTALLTNLSL 91
           FSSS     +  S  S++ TTLTQ+E+TKI+LL+PRLCL NH +TAI L+ T+LL N   
Sbjct: 36  FSSSIDIPKL--STNSEVVTTLTQEEVTKINLLIPRLCLLNHLTTAIQLITTSLLANPPP 95

Query: 92  QSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQRKSKEALK 151
           +SL  SIL+HSL SQ D    MSLLT L+H   A  + SP+ TMLI SY K+++ KEALK
Sbjct: 96  KSLSFSILTHSLTSQPDMTKPMSLLTILRHTPQAHSHLSPMNTMLITSYIKKKRPKEALK 155

Query: 152 IFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVCMC 211
           +++WMLRPGSPCK +++V+  L+ GLC  G VL+ LK+LK+M+    +P   L+  V   
Sbjct: 156 VYNWMLRPGSPCKVEKIVFCVLVNGLCEIGWVLEGLKVLKDMVSVGFLPIGGLKERVYRS 215

Query: 212 LLREAMIGEATELSETLNSIADRNISDHLRKVSELLDRVINNWIE 257
           LL EA + EA EL + L    +    +  +KV +LLD +I NW E
Sbjct: 216 LLSEARVKEAVELDKALCDCFEDVSGEGGKKVIDLLDSLIRNWSE 258

[Close]

BLAST of CmaCh13G008370 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.0e-38
Identity = 113/262 (43.13%), Postives = 155/262 (59.16%), Query Frame = 1


Query: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSSS----SSVYDSAASKINTTLTQD 60
           MKT++   L   +  LPP       P+    FS S S+    +  Y +   K   TL+Q+
Sbjct: 1   MKTLK---LQQFQFLLPPIAASKTQPSKQQIFSYSFSAIPNLTDTYLNTRPKNFPTLSQE 60

Query: 61  ELTKISLLLPRLCLYNHHSTAITLLDTALLTNLSL--QSLPLSILSHSLASQSDFALTMS 120
           +++KI+LL+PRLCL NH +TAI L  TALLTN S   +SL +SIL HSL  Q D  L+MS
Sbjct: 61  QVSKINLLIPRLCLSNHLTTAIQLTTTALLTNASPNPKSLSVSILIHSLTLQPDLKLSMS 120

Query: 121 LLTRLKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLI 180
           LLTRL H   A  + +P+ TMLI SY K+ + K+ALK+++WM RPGSPC  D+  Y  L+
Sbjct: 121 LLTRLNHIPQAHPHLTPVSTMLIASYLKKGRHKDALKVYNWMRRPGSPCTVDKDAYGILV 180

Query: 181 AGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADR 240
              C  G+VL+ L +L++M+  +L+P   LR  V   LLREA + EA    E L  +A  
Sbjct: 181 GRFCASGVVLEGLMVLRDMLKVHLLPGEGLRKKVVRSLLREARVREAEAFEELLPCVA-- 240

Query: 241 NISDHLRKVSELLDRVINNWIE 257
                L KV +LLD +I NW +
Sbjct: 241 -CVGALNKVLDLLDHLIGNWTQ 256

[Close]

BLAST of CmaCh13G008370 vs. TAIR10
Match: AT4G19890.1 (AT4G19890.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 55.5 bits (132), Expect = 5.8e-08
Identity = 32/75 (42.67%), Postives = 42/75 (56.00%), Query Frame = 1


Query: 126 LLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLD 185
           L+ +    T +I  Y K+     ALK FH M R G  C PD   Y +LI+GLC+K MV +
Sbjct: 529 LIPTKETYTSMISCYCKEGDIDLALKYFHNMKRHG--CVPDSFTYGSLISGLCKKSMVDE 588

Query: 186 ALKILKNMIDSNLVP 201
           A K+ + MID  L P
Sbjct: 589 ACKLYEAMIDRGLSP 601

[Close]

BLAST of CmaCh13G008370 vs. TAIR10
Match: AT4G20090.1 (AT4G20090.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 2.2e-07
Identity = 45/164 (27.44%), Postives = 78/164 (47.56%), Query Frame = 1


Query: 64  LLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQ---SDFALTMSLLTRLK 123
           L+  LCL      A++LL+  + +      +    L + L  Q   +D    +S +    
Sbjct: 298 LIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERG 357

Query: 124 HHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRK 183
           +H N  +YS     +LI    K+ K++EA+ ++  M   G  CKP+ +VY  L+ GLCR+
Sbjct: 358 YHLNQHIYS-----VLISGLFKEGKAEEAMSLWRKMAEKG--CKPNIVVYSVLVDGLCRE 417

Query: 184 GMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATEL 225
           G   +A +IL  MI S  +P+    S +     +  +  EA ++
Sbjct: 418 GKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQV 454

[Close]

BLAST of CmaCh13G008370 vs. TAIR10
Match: AT5G64320.1 (AT5G64320.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 6.4e-07
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1


Query: 136 LIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMID 195
           LI ++ K+ +  EA++IF  M R G  CKPD   + +LI+GLC    +  AL +L++MI 
Sbjct: 465 LISAFCKEHRIPEAVEIFREMPRKG--CKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 524

Query: 196 SNLVPDYDLRSWVCMCLLREAMIGEATEL 225
             +V +    + +    LR   I EA +L
Sbjct: 525 EGVVANTVTYNTLINAFLRRGEIKEARKL 551

[Close]

BLAST of CmaCh13G008370 vs. TAIR10
Match: AT5G39710.1 (AT5G39710.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 50.8 bits (120), Expect = 1.4e-06
Identity = 33/101 (32.67%), Postives = 53/101 (52.48%), Query Frame = 1


Query: 124 NALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMV 183
           + + YSS     LI  + +QR++KEA  ++  MLR G P  PDE  Y  LI   C +G +
Sbjct: 484 DTITYSS-----LIQGFCEQRRTKEACDLYEEMLRVGLP--PDEFTYTALINAYCMEGDL 543

Query: 184 LDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATEL 225
             AL++   M++  ++PD    S +   L +++   EA  L
Sbjct: 544 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRL 577

[Close]

BLAST of CmaCh13G008370 vs. TAIR10
Match: AT3G53700.1 (AT3G53700.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.9e-06
Identity = 31/95 (32.63%), Postives = 50/95 (52.63%), Query Frame = 1


Query: 136 LIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMID 195
           L+    K    K A++I   ML+ G    PD   Y ++I+GLC+ G V +A+++L  MI 
Sbjct: 301 LVNGLCKAGHVKHAIEIMDVMLQEGYD--PDVYTYNSVISGLCKLGEVKEAVEVLDQMIT 360

Query: 196 SNLVPDYDLRSWVCMCLLREAMIGEATELSETLNS 231
            +  P+    + +   L +E  + EATEL+  L S
Sbjct: 361 RDCSPNTVTYNTLISTLCKENQVEEATELARVLTS 393

[Close]

BLAST of CmaCh13G008370 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 2.2e-94
Identity = 192/258 (74.42%), Postives = 217/258 (84.11%), Query Frame = 1


Query: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSS--SSSVYDSAASKINTTLTQDEL 60
           MK IRQ+LL L+RLPL P+L+  QIP I +PFSSSSS  S S   S A++ NTTLT DEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCLYNH STAITLL   LLTN SLQSL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLC 180
           LKHH NALLYS+PI+TMLI SY K+RKSKEALKIFHWMLRPGSPCKP+E VYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISD 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WV  CLLREAMI EA E +ET N + D++  D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTID 240

Query: 241 HLRKVSELLDRVINNWIE 257
           HLR+VSELL+R+I NWI+
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]

BLAST of CmaCh13G008370 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 346.7 bits (888), Expect = 3.5e-92
Identity = 188/258 (72.87%), Postives = 216/258 (83.72%), Query Frame = 1


Query: 1   MKTIRQRLLPLRRLPLPPQLVHDQIPAIGTPFSSSSS--SSSVYDSAASKINTTLTQDEL 60
           MK IRQ+LL L+RLPL P+L+  QIPAI +PFSSSSS  S S   S A+K NTTLT DEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TKISLLLPRLCLYNHHSTAITLLDTALLTNLSLQSLPLSILSHSLASQSDFALTMSLLTR 120
           T+I+LLLPRLCL+NH STAI+LL   LLTN SL SL LS+LSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHRNALLYSSPIITMLIFSYSKQRKSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLC 180
           LKHH NALLYS+PI+TMLI SY K+RKSKEALK+FHWMLRPGSPCKP+E VYKTLIAGL 
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGMVLDALKILKNMIDSNLVPDYDLRSWVCMCLLREAMIGEATELSETLNSIADRNISD 240
           RKGM  DALK+L+NMIDSNLVPD DLR+WV   LL+EAMI EA E ++ LN + D+N  D
Sbjct: 181 RKGMTFDALKVLRNMIDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTID 240

Query: 241 HLRKVSELLDRVINNWIE 257
           HLR+VSELL+R+I NWI+
Sbjct: 241 HLRRVSELLNRIITNWID 258

[Close]

BLAST of CmaCh13G008370 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica])

HSP 1 Score: 208.8 bits (530), Expect = 1.2e-50
Identity = 123/235 (52.34%), Postives = 156/235 (66.38%), Query Frame = 1


Query: 30  TPFSSSSSSSSVYDSAASKINT-----TLTQDELTKISLLLPRLCLYNHHSTAITLLDTA 89
           TP + S+S+S++    A K        +LTQ+E TKI+LLLPRLCL NH  TA  L  TA
Sbjct: 20  TPRTFSTSTSAIDSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITA 79

Query: 90  LLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQR 149
           LLTN  L+SL LSIL HS  SQ D A  MSLLTRL+H+  +  Y +PI TM I SY K+ 
Sbjct: 80  LLTNPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKN 139

Query: 150 KSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDL 209
           K KEALK+F+W++RPGSPC  DE V + L+ G C+ GMVL+ALK+L+ M+ +N+VP  DL
Sbjct: 140 KPKEALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEALKVLRAMLSTNIVPGCDL 199

Query: 210 RSWVCMCLLREAMIGEATELSETLNSIADRNISDH---LRKVSELLDRVINNWIE 257
           + WV   LLREA I EA EL+E L  + DR   D    ++KV  LLD +I NW E
Sbjct: 200 KKWVYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CmaCh13G008370 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume])

HSP 1 Score: 208.4 bits (529), Expect = 1.5e-50
Identity = 123/235 (52.34%), Postives = 155/235 (65.96%), Query Frame = 1


Query: 30  TPFSSSSSSSSVYDSAASKINT-----TLTQDELTKISLLLPRLCLYNHHSTAITLLDTA 89
           TP S S+S+S++    A K        +LTQ+E TKI+LLLPRLCL NH  TA  L  TA
Sbjct: 20  TPRSFSTSTSAIDSITAPKPTNQAQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITA 79

Query: 90  LLTNLSLQSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQR 149
           LLTN  L+SL LSIL HS  SQ D A  MSLLTRL+H+  +  Y +PI TM I SY K+ 
Sbjct: 80  LLTNPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKN 139

Query: 150 KSKEALKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDL 209
           K KEALK+F+W++RPGSPC  DE V + L+ G C+ GMVL+ LK+L+ M+ +N+VP  DL
Sbjct: 140 KPKEALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGMVLEVLKVLRAMLSTNIVPGCDL 199

Query: 210 RSWVCMCLLREAMIGEATELSETLNSIADRNISDH---LRKVSELLDRVINNWIE 257
           + WV   LLREA I EA EL+E L  + DR   D    ++KV  LLD +I NW E
Sbjct: 200 KKWVYKVLLREARIKEAVELNEALGCVGDREKGDESECVKKVLALLDHMIGNWAE 254

[Close]

BLAST of CmaCh13G008370 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 200.7 bits (509), Expect = 3.1e-48
Identity = 120/227 (52.86%), Postives = 153/227 (67.40%), Query Frame = 1


Query: 31  PFSSSSSSSSVYDSAASKINT-TLTQDELTKISLLLPRLCLYNHHSTAITLLDTALLTNL 90
           PFSSSSS+ +   S      T TLTQ ++T I+LLLPRLCL ++ +TA  L  TALLTN 
Sbjct: 26  PFSSSSSTIASITSPKPTTQTQTLTQQDVTNINLLLPRLCLSDNLNTATHLTITALLTNP 85

Query: 91  SLQSLPLSILSHSLASQSDFALTMSLLTRLKHHRNALLYSSPIITMLIFSYSKQRKSKEA 150
            L SL LSIL HS  SQ D A  MSLLTRL+HH  +  + +PI TMLI SY K+++ +EA
Sbjct: 86  PLHSLSLSILIHSFTSQPDMARPMSLLTRLRHHPPSHSHLTPITTMLIASYFKRKRPREA 145

Query: 151 LKIFHWMLRPGSPCKPDEMVYKTLIAGLCRKGMVLDALKILKNMIDSNLVPDYDLRSWVC 210
           LK+F+WM+RPGSP   DE V   L+ G CR GMVL+AL +L+ M+  N+VP  DLR WV 
Sbjct: 146 LKVFNWMVRPGSPVVLDERVCGVLVCGFCRNGMVLEALNVLRAMLGVNIVPGCDLRKWVY 205

Query: 211 MCLLREAMIGEATELSETLNSIADRNISDHLRKVSELLDRVINNWIE 257
             LLREA I EA EL++ L+ + D   S+  RKV  LLD +I++W E
Sbjct: 206 RGLLREARIKEALELNKALDCVGDGE-SEGFRKVLALLDHMIDSWTE 251

The following BLAST results are available for this feature:

BLAST of CmaCh13G008370 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PP326_ARATH	1.0e-06	42.67	Pentatricopeptide repeat-containing protein At4g19890 OS=Arabidopsis thaliana GN...	[more]
PP327_ARATH	3.9e-06	27.44	Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN...	[more]

BLAST of CmaCh13G008370 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRQ9_CUCSA	2.5e-92	72.87	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1	[more]
M5WIJ3_PRUPE	8.0e-51	52.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1	[more]
A0A067LG57_JATCU	2.3e-45	49.33	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1	[more]
B9GN11_POPTR	3.6e-43	48.44	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2	[more]
A0A061DVU2_THECC	6.0e-38	43.13	Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CmaCh13G008370 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19890.1	5.8e-08	42.67	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT4G20090.1	2.2e-07	27.44	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G64320.1	6.4e-07	34.83	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT5G39710.1	1.4e-06	32.67	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G53700.1	1.9e-06	32.63	Pentatricopeptide repeat (PPR) superfamily protein	[more]

BLAST of CmaCh13G008370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659067591\|ref\|XP_008440255.1\|	2.2e-94	74.42	PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-...	[more]
gi\|449474047\|ref\|XP_004154059.1\|	3.5e-92	72.87	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
gi\|595865128\|ref\|XP_007211897.1\|	1.2e-50	52.34	hypothetical protein PRUPE_ppa010317mg [Prunus persica]	[more]
gi\|645238977\|ref\|XP_008225928.1\|	1.5e-50	52.34	PREDICTED: uncharacterized protein LOC103325527 [Prunus mume]	[more]
gi\|764554710\|ref\|XP_004293884.2\|	3.1e-48	52.86	PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh13G008370.1	CmaCh13G008370.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 134..154 score:
IPR002885	Pentatricopeptide repeat	PFAM	PF12854	PPR_1	coord: 163..193 score: 5.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 169..201 score: 1.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 129..163 score: 7.772coord: 166..200 score: 11
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 248..255 score: 6.5E-23coord: 128..201 score: 6.5E-23coord: 21..31 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh13G008370	Cucsa.134620	Cucumber (Gy14) v1	cgycmaB0366
CmaCh13G008370	Cla002654	Watermelon (97103) v1	cmawmB187
CmaCh13G008370	Csa1G051900	Cucumber (Chinese Long) v2	cmacuB204
CmaCh13G008370	MELO3C002395	Melon (DHL92) v3.5.1	cmameB197
CmaCh13G008370	ClCG03G004120	Watermelon (Charleston Gray)	cmawcgB196
CmaCh13G008370	CSPI01G09980	Wild cucumber (PI 183967)	cmacpiB206
CmaCh13G008370	CmoCh13G008660	Cucurbita moschata (Rifu)	cmacmoB218
CmaCh13G008370	Lsi02G005350	Bottle gourd (USVL1VR-Ls)	cmalsiB202
CmaCh13G008370	Cp4.1LG20g02840	Cucurbita pepo (Zucchini)	cmacpeB234
CmaCh13G008370	CsaV3_1G010050	Cucumber (Chinese Long) v3	cmacucB0235
CmaCh13G008370	Cla97C03G055280	Watermelon (97103) v2	cmawmbB227
CmaCh13G008370	BhiUN316G33	Wax gourd	cmawgoB0250
CmaCh13G008370	Carg07629	Silver-seed gourd	carcmaB1393

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh13G008370	Melon (DHL92) v3.6.1	cmamedB218
CmaCh13G008370	Silver-seed gourd	carcmaB0689
CmaCh13G008370	Cucurbita maxima (Rimu)	cmacmaB218
CmaCh13G008370	Cucurbita moschata (Rifu)	cmacmoB219
CmaCh13G008370	Cucurbita pepo (Zucchini)	cmacpeB214
CmaCh13G008370	Cucumber (Gy14) v2	cgybcmaB063