Csa1G051900 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa1G051900
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein; contains IPR002885 (Pentatricopeptide repeat)
Location	Chr1 : 6211600 .. 6213917 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCAGAGTCGAGTTGAGTCTGAGAGGAAATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTATGACATTTGATGCTTTGAAGGTTCTCAGGAATATGATTGATTCGAATTTGGTTCCGGATTGCGATTTGAGAAATTGGGTTTTTAGGTCTTTGCTGAAAGAAGCGATGATCCCCGAAGCCATGGAGTTTAATGATGCTTTGAATTTCGTTGGCGATCAGAATACAATTGACCATCTTCGAAGGGTGTCGGAATTGTTGAATCGTATCATCACCAATTGGATAGACTAGAGAAGATCTTCTGGTAAGCCATTTGCTCTCTGTCATTCTATTAATTTTTCACCATCTCTAGACTCTAATTTTGACGATATTTAGAATATAGCGGATGATTGAGTCAAGCAATTTGTTGATCATAAGCAGACAGACCTTACAATGCATTTATAAGGATTCAGCAACTTTATCACGGGATAGTCTACTGCATGATCTATTAAAGTGCATATAAAATTGGGAAGCTTGGTATCAATTATCTGATTGGTAATATTGAATTCTTTTTACTTCTTTGTATTGTGTTGTATAGTTAATTAGCAGAGTAGTTTTGTGACATTTGCTGCCATTTCATTTCAAAAGCTAGACCACATAAAGTAATTCCACACAAAAGGATTAGCATTTAAGCTAGTTAAACTATAAGCTAAAAATAAAGGGCAAGCTTCTAAACCATGTCATTCTCCCTCAACAAAGTGTAATTTCTGCATCCTTCTTGCAACTTGAATTGATATAATTGAAAGCTTAAAGCTTAGATAGCATGTAGCTAGAAGGAGAAGAGAAAGAAGAATAACAAAAACAGATATTATGGATTGTTTATGTTTAAGTGAGCATGGATAAGACAGGTTAAAGTTGATGGATTATGATAAATTTGATAGATAAGTAGTGACATTTTCTCTTGTTCAGCTTCAACAAATTTTCAAGTTTACAATGGAGGGAAAATATTTCATAACTCATCAACTTATGCGTATAACATGATTAGCGATTCAATAGCTTTTAAATTTTAGTTACTTTTCTTATATAGCTGGGTGCTAATCTAAGAGTTCAAAATCTTGCAGTATCAGGTTCCTTTCCTGGAGAAGGAAGAGAAACTTGGTCGTTACCGGTGTATTCAATTTCCAGGGAGAGGAAAGGCAGTGATGCAGGACCCCATAGTTTTCACAAATCTTCAAAGTAGAAAGGCTTGAGCATCAAGTTCACATCAAATGTTACAAACTGGGATAAACAGCTGCAGAAATTGAGGGTATAATGTAACATAATGGTGGTTAAATGTCCCTGCAACCCAAGTGGAGGTTAACTACATAATTTTTTCTCTGTTTAGTATCATCATTTTGGACATGGGGTTTCAATAGAATCTTCGCAAAGTTCTCTCAGTTGGTGGTGGGTACTAAGCATTACCTAATTCAAACTCGTTAAGACACAAGTAGGTGGGCGTTCCAACTTGAAGTCTCACTCGTTCGAGTTTAGGGAAGAAAAACATCAAACTCCAGTCAAAAGTTTGAATGTACTCGTCAGCAATTTTGAACTTGATAAAAAACACTGTCTTGTTTTATTTTTAATGTGAATATTGTATCGGTTAACTTCGAGACATTTTTATGTTCCGTATGAAATTTAAATTCGAATACATATTTCAATCATATTTCTAATTATTAACTTATTTCAATCTGATAAACTAAACAACTTAACATCCATTATCAAAACCATTTTTTACATTTGAAGAGAGAAAATTATATATAGAAAGAGGTGTTGAATATTACAAAAA

mRNA sequence

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTCTTTGCTGA

Coding sequence (CDS)

ATGAAGAGAATACGGCAACAGCTTCTTACCCTACAACGTCTTCCACTCTCACCAGAGCTCCTCCGCTTTCAAATTCCCGCCATTCTTTCTCCATTTTCTTCTTCTTCCTCCTTCATTTCCGATTCTCCATCAGCTTCCATAGCCACCAAACCCAATACCACTCTGACCCACGACGAGCTCACAAGGATCAATCTCCTTCTTCCTCGTCTCTGTCTCCACAACCACCTTTCTACTGCTATCTCTCTTCTCCACGCCACTCTCCTCACCAATCCTTCACTTCACTCTCTTTCCCTTTCAGTTCTCTCCCACTCACTTGCTTCCCAGTCCGATTTTGCCCTCACAATGTCCCTCCTCACTCGTCTTAAGCACCATCCCAATGCCCTTCTCTATTCAACCCCTATCGTCACTATGCTTATTTCCTCTTATTGCAAACGCCGGAAATCCAAGGAGGCGTTGAAGCTTTTCCATTGGATGCTGAGACCGGGGTCGCCATGTAAGCCGGAAGAGAGGGTTTATAAAACCCTAATTGCGGGACTTTATAGGAAGGGTCTTTGCTGA

Protein sequence

MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGLC*

Homology

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BLAST of Csa1G051900 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 9.2e-97
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGL 185
           RKG+
Sbjct: 181 RKGM 184

[Close]

BLAST of Csa1G051900 vs. TrEMBL
Match: M5WIJ3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 2.0e-35
Identity = 87/155 (56.13%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGL 185
           EALK+F+W++RPGSPC  +ERV + L+ G  + G+
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGM 177

[Close]

BLAST of Csa1G051900 vs. TrEMBL
Match: B9GN11_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 1.0e-34
Identity = 85/160 (53.12%), Postives = 111/160 (69.38%), Query Frame = 1


Query: 29  LSPFSSS-----SSFISDSPSASIATKPNTTLTHDELTRINLLLPRLCLHNHLSTAISLL 88
           +SPFS       SS I D P  S  ++  TTLT +E+T+INLL+PRLCL NHL+TAI L+
Sbjct: 25  ISPFSHQLFALFSSSI-DIPKLSTNSEVVTTLTQEEVTKINLLIPRLCLLNHLTTAIQLI 84

Query: 89  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 148
             +LL NP   SLS S+L+HSL SQ D    MSLLT L+H P A  + +P+ TMLI+SY 
Sbjct: 85  TTSLLANPPPKSLSFSILTHSLTSQPDMTKPMSLLTILRHTPQAHSHLSPMNTMLITSYI 144

Query: 149 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKG 184
           K+++ KEALK+++WMLRPGSPCK E+ V+  L+ GL   G
Sbjct: 145 KKKRPKEALKVYNWMLRPGSPCKVEKIVFCVLVNGLCEIG 183

[Close]

BLAST of Csa1G051900 vs. TrEMBL
Match: A0A067LG57_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 7.2e-33
Identity = 79/153 (51.63%), Postives = 102/153 (66.67%), Query Frame = 1


Query: 26  PAILSPFSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLL 85
           P  + PF+    F + S S+ I    N+  +LT  ELT+INLL+PRLCL +HL+TAI L 
Sbjct: 20  PFAIYPFARQ--FCASSSSSEIEKSKNSELSLTQQELTKINLLIPRLCLSDHLTTAIHLT 79

Query: 86  HATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYC 145
             +LLTNP   S+S S+L H L SQ D A +MS LT L+H P    + TPI TMLI+SY 
Sbjct: 80  TTSLLTNPPQKSISFSILIHFLTSQPDMAKSMSFLTILRHTPQVHCHLTPITTMLITSYV 139

Query: 146 KRRKSKEALKLFHWMLRPGSPCKPEERVYKTLI 177
           K+R+ KEALK++ WM RPGSPCK E  VY+ L+
Sbjct: 140 KKRRPKEALKVYQWMQRPGSPCKVERIVYEVLV 170

[Close]

BLAST of Csa1G051900 vs. TrEMBL
Match: A0A061DVU2_THECC (Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_005982 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 7.4e-30
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNT--TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS S S I +     + T+P    TL+ +++++INLL+PRLCL NHL+TAI L    LLT
Sbjct: 29  FSYSFSAIPNLTDTYLNTRPKNFPTLSQEQVSKINLLIPRLCLSNHLTTAIQLTTTALLT 88

Query: 92  N--PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRK 151
           N  P+  SLS+S+L HSL  Q D  L+MSLLTRL H P A  + TP+ TMLI+SY K+ +
Sbjct: 89  NASPNPKSLSVSILIHSLTLQPDLKLSMSLLTRLNHIPQAHPHLTPVSTMLIASYLKKGR 148

Query: 152 SKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGL 185
            K+ALK+++WM RPGSPC  ++  Y  L+      G+
Sbjct: 149 HKDALKVYNWMRRPGSPCTVDKDAYGILVGRFCASGV 185

[Close]

BLAST of Csa1G051900 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 360.9 bits (925), Expect = 1.3e-96
Identity = 183/184 (99.46%), Postives = 184/184 (100.00%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGL 185
           RKG+
Sbjct: 181 RKGM 184

[Close]

BLAST of Csa1G051900 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 347.4 bits (890), Expect = 1.5e-92
Identity = 176/184 (95.65%), Postives = 181/184 (98.37%), Query Frame = 1


Query: 1   MKRIRQQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDEL 60
           MKRIRQQLLTLQRLPLSPELLRFQIP ILSPFSSSSSFIS SPSASIAT+PNTTLTHDEL
Sbjct: 1   MKRIRQQLLTLQRLPLSPELLRFQIPPILSPFSSSSSFISGSPSASIATEPNTTLTHDEL 60

Query: 61  TRINLLLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTR 120
           TRINLLLPRLCL+NHLSTAI+LLHATLLTNPSL SLSLSVLSHSLASQSDFALTMSLLTR
Sbjct: 61  TRINLLLPRLCLYNHLSTAITLLHATLLTNPSLQSLSLSVLSHSLASQSDFALTMSLLTR 120

Query: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLY 180
           LKHHPNALLYSTPIVTMLISSYCKRRKSKEALK+FHWMLRPGSPCKPEERVYKTLIAGLY
Sbjct: 121 LKHHPNALLYSTPIVTMLISSYCKRRKSKEALKIFHWMLRPGSPCKPEERVYKTLIAGLY 180

Query: 181 RKGL 185
           RKG+
Sbjct: 181 RKGM 184

[Close]

BLAST of Csa1G051900 vs. NCBI nr
Match: gi|764554710|ref|XP_004293884.2| (PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp. vesca])

HSP 1 Score: 166.8 bits (421), Expect = 3.7e-38
Identity = 94/179 (52.51%), Postives = 117/179 (65.36%), Query Frame = 1


Query: 6   QQLLTLQRLPLSPELLRFQIPAILSPFSSSSSFISDSPSASIATKPNTTLTHDELTRINL 65
           QQ+L L   P   + L F       PFSSSSS I+   S    T+  T LT  ++T INL
Sbjct: 8   QQILCLASKPTITQQLSF-------PFSSSSSTIASITSPKPTTQTQT-LTQQDVTNINL 67

Query: 66  LLPRLCLHNHLSTAISLLHATLLTNPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHP 125
           LLPRLCL ++L+TA  L    LLTNP LHSLSLS+L HS  SQ D A  MSLLTRL+HHP
Sbjct: 68  LLPRLCLSDNLNTATHLTITALLTNPPLHSLSLSILIHSFTSQPDMARPMSLLTRLRHHP 127

Query: 126 NALLYSTPIVTMLISSYCKRRKSKEALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGL 185
            +  + TPI TMLI+SY KR++ +EALK+F+WM+RPGSP   +ERV   L+ G  R G+
Sbjct: 128 PSHSHLTPITTMLIASYFKRKRPREALKVFNWMVRPGSPVVLDERVCGVLVCGFCRNGM 178

[Close]

BLAST of Csa1G051900 vs. NCBI nr
Match: gi|595865128|ref|XP_007211897.1| (hypothetical protein PRUPE_ppa010317mg [Prunus persica])

HSP 1 Score: 157.1 bits (396), Expect = 2.9e-35
Identity = 87/155 (56.13%), Postives = 107/155 (69.03%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNTT--LTHDELTRINLLLPRLCLHNHLSTAISLLHATLLT 91
           FS+S+S I DS +A   T    T  LT +E T+INLLLPRLCL NHL TA  L    LLT
Sbjct: 24  FSTSTSAI-DSITAPKPTNQTQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLT 83

Query: 92  NPSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSK 151
           NP L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K K
Sbjct: 84  NPPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPK 143

Query: 152 EALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGL 185
           EALK+F+W++RPGSPC  +ERV + L+ G  + G+
Sbjct: 144 EALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGM 177

[Close]

BLAST of Csa1G051900 vs. NCBI nr
Match: gi|645238977|ref|XP_008225928.1| (PREDICTED: uncharacterized protein LOC103325527 [Prunus mume])

HSP 1 Score: 156.4 bits (394), Expect = 4.9e-35
Identity = 83/154 (53.90%), Postives = 105/154 (68.18%), Query Frame = 1


Query: 32  FSSSSSFISDSPSASIATKPNT-TLTHDELTRINLLLPRLCLHNHLSTAISLLHATLLTN 91
           FS+S+S I    +     +  T +LT +E T+INLLLPRLCL NHL TA  L    LLTN
Sbjct: 24  FSTSTSAIDSITAPKPTNQAQTQSLTQEEHTKINLLLPRLCLLNHLDTATHLTITALLTN 83

Query: 92  PSLHSLSLSVLSHSLASQSDFALTMSLLTRLKHHPNALLYSTPIVTMLISSYCKRRKSKE 151
           P L SLSLS+L HS  SQ D A  MSLLTRL+H+P +  Y TPI TM I+SY K+ K KE
Sbjct: 84  PPLKSLSLSILIHSFTSQPDMARPMSLLTRLRHNPPSHPYLTPITTMFIASYFKKNKPKE 143

Query: 152 ALKLFHWMLRPGSPCKPEERVYKTLIAGLYRKGL 185
           ALK+F+W++RPGSPC  +ERV + L+ G  + G+
Sbjct: 144 ALKMFNWLVRPGSPCVLDERVCEVLVNGFCKNGM 177

The following BLAST results are available for this feature:

BLAST of Csa1G051900 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LRQ9_CUCSA	9.2e-97	99.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1	[more]
M5WIJ3_PRUPE	2.0e-35	56.13	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010317mg PE=4 SV=1	[more]
B9GN11_POPTR	1.0e-34	53.13	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12210g PE=4 SV=2	[more]
A0A067LG57_JATCU	7.2e-33	51.63	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26667 PE=4 SV=1	[more]
A0A061DVU2_THECC	7.4e-30	47.77	Pentatricopeptide repeat-containing protein, putative OS=Theobroma cacao GN=TCM_...	[more]

BLAST of Csa1G051900 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449474047\|ref\|XP_004154059.1\|	1.3e-96	99.46	PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum...	[more]
gi\|659067591\|ref\|XP_008440255.1\|	1.5e-92	95.65	PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-...	[more]
gi\|764554710\|ref\|XP_004293884.2\|	3.7e-38	52.51	PREDICTED: uncharacterized protein LOC101313880 isoform X2 [Fragaria vesca subsp...	[more]
gi\|595865128\|ref\|XP_007211897.1\|	2.9e-35	56.13	hypothetical protein PRUPE_ppa010317mg [Prunus persica]	[more]
gi\|645238977\|ref\|XP_008225928.1\|	4.9e-35	53.90	PREDICTED: uncharacterized protein LOC103325527 [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002885	Pentatricopeptide_repeat
IPR002885	Pentatricopeptide_repeat

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
CU127443	cucumber EST collection version 3.0	transcribed_cluster
CU159576	cucumber EST collection version 3.0	transcribed_cluster
CU170210	cucumber EST collection version 3.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa1G051900.1	Csa1G051900.1	mRNA
Csa1G051900.2	Csa1G051900.2	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
CU127443	CU127443	transcribed_cluster
CU170210	CU170210	transcribed_cluster
CU159576	CU159576	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 171..199 score: 0.0011coord: 136..156 score: 7.
IPR002885	Pentatricopeptide repeat	TIGRFAMs	TIGR00756	TIGR00756	coord: 136..156 score: 6.6E-4coord: 171..204 score: 5.
IPR002885	Pentatricopeptide repeat	PROFILE	PS51375	PPR	coord: 168..202 score: 9.657coord: 131..165 score: 9
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 12..226 score: 1.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa1G051900	Cla002654	Watermelon (97103) v1	cuwmB008
Csa1G051900	MELO3C002395	Melon (DHL92) v3.5.1	cumeB027
Csa1G051900	ClCG03G004120	Watermelon (Charleston Gray)	cuwcgB035
Csa1G051900	Lsi02G005350	Bottle gourd (USVL1VR-Ls)	culsiB022
Csa1G051900	Cla97C03G055280	Watermelon (97103) v2	cuwmbB032
Csa1G051900	BhiUN316G33	Wax gourd	cuwgoB026
Csa1G051900	CSPI01G09980	Wild cucumber (PI 183967)	cpicuB000
Csa1G051900	CmaCh13G008370	Cucurbita maxima (Rimu)	cmacuB204
Csa1G051900	CmoCh13G008660	Cucurbita moschata (Rifu)	cmocuB189
Csa1G051900	Cp4.1LG20g02840	Cucurbita pepo (Zucchini)	cpecuB515
Csa1G051900	Carg07629	Silver-seed gourd	carcuB1017

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa1G051900	Cucumber (Gy14) v2	cgybcuB001
Csa1G051900	Melon (DHL92) v3.6.1	cumedB022
Csa1G051900	Silver-seed gourd	carcuB0523
Csa1G051900	Cucumber (Gy14) v1	cgycuB188
Csa1G051900	Cucurbita maxima (Rimu)	cmacuB397
Csa1G051900	Cucurbita moschata (Rifu)	cmocuB380
Csa1G051900	Cucurbita pepo (Zucchini)	cpecuB029