WMU17322 (transcribed_cluster) Watermelon (97103) v1

NameWMU17322
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown protein
LocationChr3 : 4201442 .. 4202860 (+)
Sequence length501
The following sequences are available for this feature:

transcribed_cluster sequence

ATCGATTCGAATTTGGTTCCGGATTGCCATTTGAGGAATTGGGTTTTTAGGTGTTTGCTGAGAGAAGCGATGATAGGCGAAGCAATGGAGTTAAATGAGACTTTGAATTTCGTTGGCGATCAGAATACCAAAGACCATCTGAGAAAAGGTGTCGGAGCTGTTGGACCGTATCATCACCAATTGGATAGATTAGACAAGATCTTCTGGCTTTTCCTTGAACTCTTGGTGGTTACCGGTGTGTTCAAGTCGCAGGGGACAGGAAAGCCATTGTGACGCAGCAGCTATAGTCTTCACAAAATGTTCAAAGGCTTGAGCATCAAGTTCACATCAATTATCAAAGTCTATAAACTGGGATAAACAGCTACAAAAATTGAGGTCATAATGTAACGTAATGGTGGTTAAATGGCCCTGCAACCCAAGTGGAGGTTAACTACACAATTTTTTTTATCTTTTCAGTGTCATCATTTTGAATTGGGGTTTCCAATAGAATCTCTTTTAACG
BLAST of WMU17322 vs. TrEMBL
Match: A0A0A0LRQ9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   IDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRK 60
           IDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT DHLR+
Sbjct: 196 IDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRR 244

Query: 61  120
           
Sbjct: 256 244

Query: 121 148
           
Sbjct: 316 244

BLAST of WMU17322 vs. NCBI nr
Match: gi|659067591|ref|XP_008440255.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-like [Cucumis melo])

HSP 1 Score: 92.8 bits (229), Expect = 6.0e-16
Identity = 42/49 (85.71%), Postives = 44/49 (89.80%), Query Frame = 1

Query: 1   IDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRK 60
           IDSNLVPDC LRNWVFRCLLREAMI EAME NET NFVGDQ+T DHLR+
Sbjct: 196 IDSNLVPDCDLRNWVFRCLLREAMIPEAMEFNETFNFVGDQDTIDHLRR 244

Query: 61  120
           
Sbjct: 256 244

Query: 121 148
           
Sbjct: 316 244

BLAST of WMU17322 vs. NCBI nr
Match: gi|449474047|ref|XP_004154059.1| (PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucumis sativus])

HSP 1 Score: 88.2 bits (217), Expect = 1.5e-14
Identity = 40/49 (81.63%), Postives = 43/49 (87.76%), Query Frame = 1

Query: 1   IDSNLVPDCHLRNWVFRCLLREAMIGEAMELNETLNFVGDQNTKDHLRK 60
           IDSNLVPDC LRNWVFR LL+EAMI EAME N+ LNFVGDQNT DHLR+
Sbjct: 196 IDSNLVPDCDLRNWVFRSLLKEAMIPEAMEFNDALNFVGDQNTIDHLRR 244

Query: 61  120
           
Sbjct: 256 244

Query: 121 148
           
Sbjct: 316 244

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LRQ9_CUCSA3.9e-1481.63Uncharacterized protein OS=Cucumis sativus GN=Csa_1G051900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659067591|ref|XP_008440255.1|6.0e-1685.71PREDICTED: pentatricopeptide repeat-containing protein At1g02060, chloroplastic-... [more]
gi|449474047|ref|XP_004154059.1|1.5e-1481.63PREDICTED: putative pentatricopeptide repeat-containing protein At5g59900 [Cucum... [more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla002654Cla002654gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0065008S1_0065008EST
S1_0098951S1_0098951EST
S2_0109897S2_0109897EST
S2_0177239S2_0177239EST
S3_0086494S3_0086494EST
S3_0095769S3_0095769EST
S3_0127466S3_0127466EST
S3_0150345S3_0150345EST