ClCG05G007990 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G007990
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 8639619 .. 8640876 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTAAAAATCTAACTTTTTCTTTTCGAGCTATGTTACCAATACCATGTTAAAATCATTGATGGATTACGATGAATTCGATTAGGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGAGTTTTTTTGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAAATTAATCATGTGCTGTTTTTCTAAACTCAAATTTGAAACATTTATTTTAATATTTTATTTCCTTTAGGCTTAAGGTTTTTTTGGTCAATCAATGATTTAAATATGGTATACAAGAAAGCCCCTTTCAAAACTAAAACTAAAGTTATATCACTTTTCTTATAGTAGTATTTATGAAAGCAAAATTAACAGCAATGATTTCAGAACAAGTTGCATCAATCATGGAAAAGAAACCAAATGACAAGTCTTGTATTTGGTCACCAAAAGGACATATTTTTCTCCCACATTTCGACTTGTTTGATTGGAGTCTCTTTTCTGGTTCGAATGTAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAGTCATACACCTTCTCCATGCTTAGTTGTTCTTCAGTGAACTTGCTTGCTGTCTTCCCAATTGCCTGTGCCTAACATACAAGCCATTTAAGAAATACTATGGGAATATAAATGTACAAAATTGAAAATTTT

mRNA sequence

GCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGAGTTTTTTTGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAGTCATACACCTTCTCCATGCTTAGTTGTTCTTCAGTGAACTTGCTTGCTGTCTTCCCAATTGCCTGTGCCTAACATACAAGCCATTTAAGAAATACTATGGGAATATAAATGTACAAAATTGAAAATTTT

Coding sequence (CDS)

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAG

Protein sequence

MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELWLKSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAGQAKSSKVSSVALGGMVGLKVKSLEYWFRLWNI
Homology
[Close]
BLAST of ClCG05G007990 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAG 120
           DFEG+IS+ FATCD+L +      SRA G+KGGSK+QGLEKEGRFMRVSIM LA KP  G
Sbjct: 213 DFEGHISDGFATCDQLCIIYESKMSRANGLKGGSKKQGLEKEGRFMRVSIMDLAAKPSVG 272

Query: 121 QAKSSKVSSVALGGMVGLKVKSLEYWFRL 144
           QAKS K  SVA GGMVGLKVKSLEY FR+
Sbjct: 273 QAKSFKEISVAFGGMVGLKVKSLEYSFRV 299

[Close]
BLAST of ClCG05G007990 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-49
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAG 120
           DFEG+IS+ FATCD+L +      SRA G+KGGSK+QGLEKEGRFMRVSIM LA KP  G
Sbjct: 213 DFEGHISDGFATCDQLCIIYESKMSRANGLKGGSKKQGLEKEGRFMRVSIMDLAAKPSVG 272

Query: 121 QAKSSKVSSVALGGMVGLKVKSLEYWFRL 144
           QAKS K  SVA GGMVGLKVKSLEY FR+
Sbjct: 273 QAKSFKEISVAFGGMVGLKVKSLEYSFRV 299

[Close]
BLAST of ClCG05G007990 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]
BLAST of ClCG05G007990 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of ClCG05G007990 vs. NCBI nr
Match: gi|659077460|ref|XP_008439216.1| (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of ClCG05G007990 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 138 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 197

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 198 DFEGHISDGFATCDQL 211

The following BLAST results are available for this feature:
BLAST of ClCG05G007990 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6I1_CUCSA1.9e-4974.50Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1[more]
BLAST of ClCG05G007990 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700202235|gb|KGN57368.1|2.8e-4974.50hypothetical protein Csa_3G182040 [Cucumis sativus][more]
gi|659077462|ref|XP_008439218.1|5.3e-2476.62PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo][more]
gi|659077464|ref|XP_008439219.1|5.3e-2476.62PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo][more]
gi|659077460|ref|XP_008439216.1|5.3e-2476.62PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo][more]
gi|778688544|ref|XP_011652772.1|2.6e-2377.63PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G007990.1ClCG05G007990.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G007990Csa3G182040Cucumber (Chinese Long) v2cuwcgB222
ClCG05G007990Cla006185Watermelon (97103) v1wcgwmB286
ClCG05G007990Cla97C05G090030Watermelon (97103) v2wcgwmbB229
ClCG05G007990Bhi01G000967Wax gourdwcgwgoB440
ClCG05G007990CSPI03G16870Wild cucumber (PI 183967)cpiwcgB226
ClCG05G007990Cucsa.107730Cucumber (Gy14) v1cgywcgB152
ClCG05G007990Lsi05G012340Bottle gourd (USVL1VR-Ls)lsiwcgB336
ClCG05G007990MELO3C031809.2Melon (DHL92) v3.6.1medwcgB416
ClCG05G007990CsaV3_3G017040Cucumber (Chinese Long) v3cucwcgB225
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G007990Melon (DHL92) v3.6.1medwcgB428
ClCG05G007990Silver-seed gourdcarwcgB0690
ClCG05G007990Silver-seed gourdcarwcgB0715
ClCG05G007990Silver-seed gourdcarwcgB0965
ClCG05G007990Cucumber (Chinese Long) v3cucwcgB245
ClCG05G007990Cucumber (Chinese Long) v3cucwcgB416
ClCG05G007990Watermelon (97103) v2wcgwmbB214
ClCG05G007990Watermelon (97103) v2wcgwmbB231
ClCG05G007990Wax gourdwcgwgoB414
ClCG05G007990Watermelon (Charleston Gray)wcgwcgB101
ClCG05G007990Watermelon (Charleston Gray)wcgwcgB154
ClCG05G007990Cucumber (Gy14) v1cgywcgB449
ClCG05G007990Cucumber (Gy14) v1cgywcgB521
ClCG05G007990Cucurbita maxima (Rimu)cmawcgB296
ClCG05G007990Cucurbita maxima (Rimu)cmawcgB365
ClCG05G007990Cucurbita maxima (Rimu)cmawcgB559
ClCG05G007990Cucurbita moschata (Rifu)cmowcgB216
ClCG05G007990Cucurbita moschata (Rifu)cmowcgB290
ClCG05G007990Cucurbita moschata (Rifu)cmowcgB359
ClCG05G007990Cucurbita moschata (Rifu)cmowcgB557
ClCG05G007990Wild cucumber (PI 183967)cpiwcgB246
ClCG05G007990Wild cucumber (PI 183967)cpiwcgB414
ClCG05G007990Cucumber (Chinese Long) v2cuwcgB238
ClCG05G007990Cucumber (Chinese Long) v2cuwcgB398
ClCG05G007990Melon (DHL92) v3.5.1mewcgB027
ClCG05G007990Melon (DHL92) v3.5.1mewcgB427
ClCG05G007990Melon (DHL92) v3.5.1mewcgB430
ClCG05G007990Watermelon (97103) v1wcgwmB301
ClCG05G007990Cucurbita pepo (Zucchini)cpewcgB046
ClCG05G007990Cucurbita pepo (Zucchini)cpewcgB207
ClCG05G007990Cucurbita pepo (Zucchini)cpewcgB556
ClCG05G007990Cucurbita pepo (Zucchini)cpewcgB678
ClCG05G007990Bottle gourd (USVL1VR-Ls)lsiwcgB023
ClCG05G007990Bottle gourd (USVL1VR-Ls)lsiwcgB334
ClCG05G007990Cucumber (Gy14) v2cgybwcgB203
ClCG05G007990Cucumber (Gy14) v2cgybwcgB360