ClCG05G007990.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG05G007990.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr05 : 8639619 .. 8640876 (+)
Sequence length	852

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTAAAAATCTAACTTTTTCTTTTCGAGCTATGTTACCAATACCATGTTAAAATCATTGATGGATTACGATGAATTCGATTAGGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGAGTTTTTTTGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAAATTAATCATGTGCTGTTTTTCTAAACTCAAATTTGAAACATTTATTTTAATATTTTATTTCCTTTAGGCTTAAGGTTTTTTTGGTCAATCAATGATTTAAATATGGTATACAAGAAAGCCCCTTTCAAAACTAAAACTAAAGTTATATCACTTTTCTTATAGTAGTATTTATGAAAGCAAAATTAACAGCAATGATTTCAGAACAAGTTGCATCAATCATGGAAAAGAAACCAAATGACAAGTCTTGTATTTGGTCACCAAAAGGACATATTTTTCTCCCACATTTCGACTTGTTTGATTGGAGTCTCTTTTCTGGTTCGAATGTAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAGTCATACACCTTCTCCATGCTTAGTTGTTCTTCAGTGAACTTGCTTGCTGTCTTCCCAATTGCCTGTGCCTAACATACAAGCCATTTAAGAAATACTATGGGAATATAAATGTACAAAATTGAAAATTTT

mRNA sequence

GCAGGGTTACTAAGAAACTCAAAGAGCTGCAGATTGAGATGGATTAATTACCTAAGGCCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAAGTGGTCTAAGATAGCGCAGCATTTAGTAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTTGTCTCGGGTTTGGAGGATTCTAAAAGTTGAGTTTTTTTGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAGTCATACACCTTCTCCATGCTTAGTTGTTCTTCAGTGAACTTGCTTGCTGTCTTCCCAATTGCCTGTGCCTAACATACAAGCCATTTAAGAAATACTATGGGAATATAAATGTACAAAATTGAAAATTTT

Coding sequence (CDS)

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGCTTAAGTCGAGAGCGGTCGGGGTAAAAGGCGGAAGCAAGGAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGTACTTGGCGGTTAAGCCTTGGGCAGGGCAAGCCAAATCCTCCAAGGTGAGTTCAGTAGCATTGGGTGGGATGGTTGGTTTGAAGGTTAAGAGTTTGGAGTATTGGTTTAGACTATGGAACATATAG

Protein sequence

MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELWLKSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAGQAKSSKVSSVALGGMVGLKVKSLEYWFRLWNI

Homology

[Close]

BLAST of ClCG05G007990.1 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.9e-49
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAG 120
           DFEG+IS+ FATCD+L +      SRA G+KGGSK+QGLEKEGRFMRVSIM LA KP  G
Sbjct: 213 DFEGHISDGFATCDQLCIIYESKMSRANGLKGGSKKQGLEKEGRFMRVSIMDLAAKPSVG 272

Query: 121 QAKSSKVSSVALGGMVGLKVKSLEYWFRL 144
           QAKS K  SVA GGMVGLKVKSLEY FR+
Sbjct: 273 QAKSFKEISVAFGGMVGLKVKSLEYSFRV 299

[Close]

BLAST of ClCG05G007990.1 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 2.8e-49
Identity = 111/149 (74.50%), Postives = 122/149 (81.88%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDELWL-----KSRAVGVKGGSKEQGLEKEGRFMRVSIMYLAVKPWAG 120
           DFEG+IS+ FATCD+L +      SRA G+KGGSK+QGLEKEGRFMRVSIM LA KP  G
Sbjct: 213 DFEGHISDGFATCDQLCIIYESKMSRANGLKGGSKKQGLEKEGRFMRVSIMDLAAKPSVG 272

Query: 121 QAKSSKVSSVALGGMVGLKVKSLEYWFRL 144
           QAKS K  SVA GGMVGLKVKSLEY FR+
Sbjct: 273 QAKSFKEISVAFGGMVGLKVKSLEYSFRV 299

[Close]

BLAST of ClCG05G007990.1 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]

BLAST of ClCG05G007990.1 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]

BLAST of ClCG05G007990.1 vs. NCBI nr
Match: gi|659077460|ref|XP_008439216.1| (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 5.3e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]

BLAST of ClCG05G007990.1 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 2.6e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1


Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 138 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 197

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 198 DFEGHISDGFATCDQL 211

The following BLAST results are available for this feature:

BLAST of ClCG05G007990.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I1_CUCSA	1.9e-49	74.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1	[more]

BLAST of ClCG05G007990.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700202235\|gb\|KGN57368.1\|	2.8e-49	74.50	hypothetical protein Csa_3G182040 [Cucumis sativus]	[more]
gi\|659077462\|ref\|XP_008439218.1\|	5.3e-24	76.62	PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo]	[more]
gi\|659077464\|ref\|XP_008439219.1\|	5.3e-24	76.62	PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo]	[more]
gi\|659077460\|ref\|XP_008439216.1\|	5.3e-24	76.62	PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo]	[more]
gi\|778688544\|ref\|XP_011652772.1\|	2.6e-23	77.63	PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG05G007990	ClCG05G007990	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG05G007990.1	ClCG05G007990.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G007990.1.five_prime_UTR1	ClCG05G007990.1.five_prime_UTR1	five_prime_UTR
ClCG05G007990.1.five_prime_UTR2	ClCG05G007990.1.five_prime_UTR2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G007990.1.cds1	ClCG05G007990.1.cds1	CDS
ClCG05G007990.1.cds2	ClCG05G007990.1.cds2	CDS
ClCG05G007990.1.cds3	ClCG05G007990.1.cds3	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG05G007990.1.three_prime_UTR1	ClCG05G007990.1.three_prime_UTR1	three_prime_UTR