Cla97C05G090030 (gene) Watermelon (97103) v2

Overview
NameCla97C05G090030
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptiontranscription factor LAF1-like isoform X3
LocationCla97Chr05 : 8210072 .. 8210302 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

mRNA sequence

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Coding sequence (CDS)

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Protein sequence

MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELW
Homology
[Close]
BLAST of Cla97C05G090030 vs. NCBI nr
Match: XP_008439216.1 (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla97C05G090030 vs. NCBI nr
Match: XP_008439218.1 (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]
BLAST of Cla97C05G090030 vs. NCBI nr
Match: XP_008439219.1 (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla97C05G090030 vs. NCBI nr
Match: KGN57368.1 (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG  RTSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla97C05G090030 vs. NCBI nr
Match: XP_011652772.1 (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 7.7e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG  RTSREGYGFEMLNWDL
Sbjct: 138 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 197

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 198 DFEGHISDGFATCDQL 211

[Close]
BLAST of Cla97C05G090030 vs. TrEMBL
Match: tr|A0A1S3AYW8|A0A1S3AYW8_CUCME (transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla97C05G090030 vs. TrEMBL
Match: tr|A0A1S3AXV7|A0A1S3AXV7_CUCME (transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]
BLAST of Cla97C05G090030 vs. TrEMBL
Match: tr|A0A1S3AYA7|A0A1S3AYA7_CUCME (transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.3e-23
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla97C05G090030 vs. TrEMBL
Match: tr|A0A0A0L6I1|A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 5.1e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEG-GRTSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG  RTSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla97C05G090030 vs. TrEMBL
Match: tr|A0A1S3AY85|A0A1S3AY85_CUCME (transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC103484072 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 1.9e-22
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 0 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCDEL
Sbjct: 228 DFEGHISDGFATCDEL 241

The following BLAST results are available for this feature:
BLAST of Cla97C05G090030 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008439216.12.0e-2376.62PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo][more]
XP_008439218.12.0e-2376.62PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo][more]
XP_008439219.12.0e-2376.62PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo][more]
KGN57368.17.7e-2377.63hypothetical protein Csa_3G182040 [Cucumis sativus][more]
XP_011652772.17.7e-2377.63PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus][more]
BLAST of Cla97C05G090030 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AYW8|A0A1S3AYW8_CUCME1.3e-2376.62transcription factor LAF1-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
tr|A0A1S3AXV7|A0A1S3AXV7_CUCME1.3e-2376.62transcription factor LAF1-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
tr|A0A1S3AYA7|A0A1S3AYA7_CUCME1.3e-2376.62transcription factor LAF1-like isoform X3 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
tr|A0A0A0L6I1|A0A0A0L6I1_CUCSA5.1e-2377.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G182040 PE=4 SV=1[more]
tr|A0A1S3AY85|A0A1S3AY85_CUCME1.9e-2276.32transcription factor LAF1-like isoform X4 OS=Cucumis melo OX=3656 GN=LOC10348407... [more]
BLAST of Cla97C05G090030 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G090030 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C05G090030.1Cla97C05G090030.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C05G090030Cla006185Watermelon (97103) v1wmwmbB206
Cla97C05G090030ClCG05G007990Watermelon (Charleston Gray)wcgwmbB229
Cla97C05G090030Lsi05G012340Bottle gourd (USVL1VR-Ls)lsiwmbB334
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C05G090030Wax gourdwgowmbB075
Cla97C05G090030Wax gourdwgowmbB192
Cla97C05G090030Watermelon (97103) v2wmbwmbB023
Cla97C05G090030Watermelon (97103) v2wmbwmbB130
Cla97C05G090030Silver-seed gourdcarwmbB0743
Cla97C05G090030Silver-seed gourdcarwmbB0772
Cla97C05G090030Silver-seed gourdcarwmbB0969
Cla97C05G090030Silver-seed gourdcarwmbB1042
Cla97C05G090030Cucumber (Gy14) v2cgybwmbB196
Cla97C05G090030Cucumber (Gy14) v2cgybwmbB367
Cla97C05G090030Cucumber (Gy14) v1cgywmbB147
Cla97C05G090030Cucumber (Gy14) v1cgywmbB522
Cla97C05G090030Cucurbita maxima (Rimu)cmawmbB346
Cla97C05G090030Cucurbita maxima (Rimu)cmawmbB424
Cla97C05G090030Cucurbita maxima (Rimu)cmawmbB649
Cla97C05G090030Cucurbita maxima (Rimu)cmawmbB651
Cla97C05G090030Cucurbita moschata (Rifu)cmowmbB331
Cla97C05G090030Cucurbita moschata (Rifu)cmowmbB404
Cla97C05G090030Cucurbita moschata (Rifu)cmowmbB621
Cla97C05G090030Cucurbita moschata (Rifu)cmowmbB624
Cla97C05G090030Wild cucumber (PI 183967)cpiwmbB209
Cla97C05G090030Wild cucumber (PI 183967)cpiwmbB404
Cla97C05G090030Cucumber (Chinese Long) v3cucwmbB206
Cla97C05G090030Cucumber (Chinese Long) v3cucwmbB400
Cla97C05G090030Cucumber (Chinese Long) v2cuwmbB204
Cla97C05G090030Cucumber (Chinese Long) v2cuwmbB386
Cla97C05G090030Bottle gourd (USVL1VR-Ls)lsiwmbB022
Cla97C05G090030Melon (DHL92) v3.6.1medwmbB021
Cla97C05G090030Melon (DHL92) v3.6.1medwmbB423
Cla97C05G090030Melon (DHL92) v3.5.1mewmbB024
Cla97C05G090030Melon (DHL92) v3.5.1mewmbB434
Cla97C05G090030Watermelon (Charleston Gray)wcgwmbB109
Cla97C05G090030Watermelon (97103) v1wmwmbB269