Lsi05G012340 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G012340
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr05 : 20198890 .. 20199759 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGAAGCAATAAAAACTTGGTGGAAAATCAAAGAAGAGACAGAGAGATGGGATGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGATTATGGTCACCTGAGGAAGATGAAAAGCTGAGAAGCTTTATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGGTGAAGCTTTTCCCTTTTAACTACTCCCAACCAATCATTCTTTGTATTCATAACATTAAAATTTTGAACCTTTTTTTTTTGGTAATTTTAAGTGCAGGGCTACAAAGAAACTCAAAGAGCTGCAGATTAAGATGGATCAATTACTTAAGACCAGGGCTGAAAAGAGGAATGTTTAGCCAACAAGAAGAAGAGAAAATCTTGACCCTTCATCACTTGTTAGGCAACAGGTAAATCTCTAAAACTTTTTTTTTTCTAGCTTCGATGCCATGTTAGAATCATTATTATCTTAATTCAGTAACTTAAATTGATGGATTACGATGAATTTAATTAGGTGGTCACAAATAGCACAACATTTAATAGGAAGAACAGATAATGAGATAAAGAACTATTGGAATTCTCATTTGAAGAAGAAAGTGGTCTCAGATTTGCAAGATTCGAAAAGTCGAGTTTTTCCGAATCGAGATCCGCAGTTGGAGGAGGTGGGAAGTTTGGGAAATGAACAAAGGGGAAGCCGACCGAAGGTCTTGTTTGCAGAATGGCTTTCTGATATTAATGGTGGGAACTCCATGGAAGGAAGCTTTGATGGTGAGGGAGGAACAGCAAGCAGAGACGGCTACTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATTAA

mRNA sequence

TGAAGCAATAAAAACTTGGTGGAAAATCAAAGAAGAGACAGAGAGATGGGATGTACAGAAACAGAGAAAGAAAAAAGAAAGAAGAAAGGATTATGGTCACCTGAGGAAGATGAAAAGCTGAGAAGCTTTATCCTCAAGAATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGAAGAAAGTGGTCTCAGATTTGCAAGATTCGAAAAGTCGAGTTTTTCCGAATCGAGATCCGCAGTTGGAGGAGGTGGGAAGTTTGGGAAATGAACAAAGGGGAAGCCGACCGAAGGTCTTGTTTGCAGAATGGCTTTCTGATATTAATGGTGGGAACTCCATGGAAGGAAGCTTTGATGGTGAGGGAGGAACAGCAAGCAGAGACGGCTACTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATTAA

Coding sequence (CDS)

ATGGCCATGGCTGCTGGACCTCTGTCCCCATTAAAGCTGAAGAAAGTGGTCTCAGATTTGCAAGATTCGAAAAGTCGAGTTTTTCCGAATCGAGATCCGCAGTTGGAGGAGGTGGGAAGTTTGGGAAATGAACAAAGGGGAAGCCGACCGAAGGTCTTGTTTGCAGAATGGCTTTCTGATATTAATGGTGGGAACTCCATGGAAGGAAGCTTTGATGGTGAGGGAGGAACAGCAAGCAGAGACGGCTACTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATTAA

Protein sequence

MAMAAGPLSPLKLKKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLSDINGGNSMEGSFDGEGGTASRDGYYGFEMLNWDLDFEGHISDGFATCD

Homology

[Close]

BLAST of Lsi05G012340 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 14  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSF 73
           KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWLS  D+NGG+SMEGSF
Sbjct: 129 KKVVLNFQDFKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSF 188

Query: 74  DGEGGT-ASRDGYYGFEMLNWDLDFEGHISDGFATCD 108
           DGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 189 DGEGRRRTSREG-YGFEMLNWDLDFEGHISDGFATCD 224

[Close]

BLAST of Lsi05G012340 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-30
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 14  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSF 73
           KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWLS  D+NGG+SMEGSF
Sbjct: 114 KKVVLNFQDFKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSF 173

Query: 74  DGEGGT-ASRDGYYGFEMLNWDLDFEGHISDGFATCD 108
           DGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 174 DGEGRRRTSREG-YGFEMLNWDLDFEGHISDGFATCD 209

[Close]

BLAST of Lsi05G012340 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-30
Identity = 73/97 (75.26%), Postives = 81/97 (83.51%), Query Frame = 1


Query: 14  KKVVSDLQDSKSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSF 73
           KKVV + QD KS VF NRDP LEE+GS GNE+  S+P+VLFAEWLS  D+NGG+SMEGSF
Sbjct: 129 KKVVLNFQDFKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSF 188

Query: 74  DGEGGT-ASRDGYYGFEMLNWDLDFEGHISDGFATCD 108
           DGEG    SR+G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 189 DGEGRRRTSREG-YGFEMLNWDLDFEGHISDGFATCD 224

[Close]

BLAST of Lsi05G012340 vs. NCBI nr
Match: gi|659077460|ref|XP_008439216.1| (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 24  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSFDGEGG-TASR 83
           K +V  NRDP LE +GS G+++  +RP+VLFAEWLS  DIN G+SMEGSFDGEG  T SR
Sbjct: 154 KKKVVSNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSR 213

Query: 84  DGYYGFEMLNWDLDFEGHISDGFATCD 108
           +G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 214 EG-YGFEMLNWDLDFEGHISDGFATCD 239

[Close]

BLAST of Lsi05G012340 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 24  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSFDGEGG-TASR 83
           K +V  NRDP LE +GS G+++  +RP+VLFAEWLS  DIN G+SMEGSFDGEG  T SR
Sbjct: 148 KKKVVSNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSR 207

Query: 84  DGYYGFEMLNWDLDFEGHISDGFATCD 108
           +G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 208 EG-YGFEMLNWDLDFEGHISDGFATCD 233

[Close]

BLAST of Lsi05G012340 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25
Identity = 63/87 (72.41%), Postives = 72/87 (82.76%), Query Frame = 1


Query: 24  KSRVFPNRDPQLEEVGSLGNEQRGSRPKVLFAEWLS--DINGGNSMEGSFDGEGG-TASR 83
           K +V  NRDP LE +GS G+++  +RP+VLFAEWLS  DIN G+SMEGSFDGEG  T SR
Sbjct: 154 KKKVVSNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSR 213

Query: 84  DGYYGFEMLNWDLDFEGHISDGFATCD 108
           +G YGFEMLNWDLDFEGHISDGFATCD
Sbjct: 214 EG-YGFEMLNWDLDFEGHISDGFATCD 239

The following BLAST results are available for this feature:

BLAST of Lsi05G012340 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi05G012340 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I1_CUCSA	1.9e-30	75.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1	[more]

BLAST of Lsi05G012340 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi05G012340 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688544\|ref\|XP_011652772.1\|	2.8e-30	75.26	PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus]	[more]
gi\|700202235\|gb\|KGN57368.1\|	2.8e-30	75.26	hypothetical protein Csa_3G182040 [Cucumis sativus]	[more]
gi\|659077460\|ref\|XP_008439216.1\|	3.5e-25	72.41	PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo]	[more]
gi\|659077462\|ref\|XP_008439218.1\|	3.5e-25	72.41	PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo]	[more]
gi\|659077464\|ref\|XP_008439219.1\|	3.5e-25	72.41	PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G012340.1	Lsi05G012340.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G012340	Csa3G182040	Cucumber (Chinese Long) v2	culsiB210
Lsi05G012340	Cla006185	Watermelon (97103) v1	lsiwmB366
Lsi05G012340	ClCG05G007990	Watermelon (Charleston Gray)	lsiwcgB336
Lsi05G012340	MELO3C031809.2	Melon (DHL92) v3.6.1	lsimedB397
Lsi05G012340	Cla97C05G090030	Watermelon (97103) v2	lsiwmbB334
Lsi05G012340	Bhi01G000967	Wax gourd	lsiwgoB434
Lsi05G012340	CsaV3_3G017040	Cucumber (Chinese Long) v3	cuclsiB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G012340	Cucumber (Gy14) v1	cgylsiB143
Lsi05G012340	Cucumber (Gy14) v1	cgylsiB490
Lsi05G012340	Cucurbita maxima (Rimu)	cmalsiB312
Lsi05G012340	Cucurbita maxima (Rimu)	cmalsiB387
Lsi05G012340	Cucurbita maxima (Rimu)	cmalsiB580
Lsi05G012340	Cucurbita maxima (Rimu)	cmalsiB836
Lsi05G012340	Cucurbita moschata (Rifu)	cmolsiB300
Lsi05G012340	Cucurbita moschata (Rifu)	cmolsiB372
Lsi05G012340	Cucurbita moschata (Rifu)	cmolsiB560
Lsi05G012340	Cucurbita pepo (Zucchini)	cpelsiB035
Lsi05G012340	Cucurbita pepo (Zucchini)	cpelsiB172
Lsi05G012340	Wild cucumber (PI 183967)	cpilsiB208
Lsi05G012340	Wild cucumber (PI 183967)	cpilsiB379
Lsi05G012340	Cucumber (Chinese Long) v2	culsiB376
Lsi05G012340	Melon (DHL92) v3.5.1	lsimeB340
Lsi05G012340	Melon (DHL92) v3.5.1	lsimeB379
Lsi05G012340	Watermelon (Charleston Gray)	lsiwcgB322
Lsi05G012340	Watermelon (97103) v1	lsiwmB373
Lsi05G012340	Cucumber (Gy14) v2	cgyblsiB193
Lsi05G012340	Cucumber (Gy14) v2	cgyblsiB197
Lsi05G012340	Cucumber (Gy14) v2	cgyblsiB342
Lsi05G012340	Melon (DHL92) v3.6.1	lsimedB357
Lsi05G012340	Silver-seed gourd	carlsiB675
Lsi05G012340	Silver-seed gourd	carlsiB903
Lsi05G012340	Cucumber (Chinese Long) v3	cuclsiB399
Lsi05G012340	Watermelon (97103) v2	lsiwmbB315
Lsi05G012340	Watermelon (97103) v2	lsiwmbB331
Lsi05G012340	Wax gourd	lsiwgoB426
Lsi05G012340	Wax gourd	lsiwgoB443
Lsi05G012340	Bottle gourd (USVL1VR-Ls)	lsilsiB008
Lsi05G012340	Bottle gourd (USVL1VR-Ls)	lsilsiB160