Cla006185 (gene) Watermelon (97103) v1

Overview
NameCla006185
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 8242426 .. 8242656 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

mRNA sequence

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Coding sequence (CDS)

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Protein sequence

MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELW
Homology
[Close]
BLAST of Cla006185 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.5e-24
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077460|ref|XP_008439216.1| (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 138 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 197

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 198 DFEGHISDGFATCDQL 211

The following BLAST results are available for this feature:
BLAST of Cla006185 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6I1_CUCSA9.5e-2477.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1[more]
BLAST of Cla006185 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077460|ref|XP_008439216.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo][more]
gi|659077462|ref|XP_008439218.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo][more]
gi|659077464|ref|XP_008439219.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo][more]
gi|700202235|gb|KGN57368.1|1.4e-2377.63hypothetical protein Csa_3G182040 [Cucumis sativus][more]
gi|778688544|ref|XP_011652772.1|1.4e-2377.63PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla006185Cla006185.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla006185Cla97C05G090030Watermelon (97103) v2wmwmbB206
Cla006185ClCG05G007990Watermelon (Charleston Gray)wcgwmB286
Cla006185Lsi05G012340Bottle gourd (USVL1VR-Ls)lsiwmB366
Cla006185MELO3C031809.2Melon (DHL92) v3.6.1medwmB447
Cla006185CsaV3_3G017040Cucumber (Chinese Long) v3cucwmB239
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla006185Silver-seed gourdcarwmB0708
Cla006185Silver-seed gourdcarwmB0736
Cla006185Silver-seed gourdcarwmB0990
Cla006185Cucumber (Chinese Long) v3cucwmB260
Cla006185Cucumber (Chinese Long) v3cucwmB429
Cla006185Watermelon (97103) v2wmwmbB193
Cla006185Watermelon (97103) v2wmwmbB210
Cla006185Wax gourdwgowmB065
Cla006185Wax gourdwgowmB213
Cla006185Wax gourdwgowmB223
Cla006185Watermelon (97103) v1wmwmB118
Cla006185Watermelon (97103) v1wmwmB126
Cla006185Cucumber (Gy14) v1cgywmB152
Cla006185Cucumber (Gy14) v1cgywmB477
Cla006185Cucumber (Gy14) v1cgywmB549
Cla006185Cucurbita maxima (Rimu)cmawmB316
Cla006185Cucurbita maxima (Rimu)cmawmB373
Cla006185Cucurbita maxima (Rimu)cmawmB564
Cla006185Cucurbita maxima (Rimu)cmawmB872
Cla006185Cucurbita moschata (Rifu)cmowmB228
Cla006185Cucurbita moschata (Rifu)cmowmB310
Cla006185Cucurbita moschata (Rifu)cmowmB366
Cla006185Cucurbita moschata (Rifu)cmowmB558
Cla006185Cucurbita moschata (Rifu)cmowmB859
Cla006185Melon (DHL92) v3.5.1mewmB019
Cla006185Melon (DHL92) v3.5.1mewmB461
Cla006185Melon (DHL92) v3.5.1mewmB466
Cla006185Watermelon (Charleston Gray)wcgwmB137
Cla006185Watermelon (Charleston Gray)wcgwmB290
Cla006185Cucumber (Chinese Long) v2cuwmB233
Cla006185Cucumber (Chinese Long) v2cuwmB252
Cla006185Cucumber (Chinese Long) v2cuwmB403
Cla006185Cucurbita pepo (Zucchini)cpewmB032
Cla006185Cucurbita pepo (Zucchini)cpewmB227
Cla006185Cucurbita pepo (Zucchini)cpewmB612
Cla006185Cucurbita pepo (Zucchini)cpewmB705
Cla006185Bottle gourd (USVL1VR-Ls)lsiwmB024
Cla006185Bottle gourd (USVL1VR-Ls)lsiwmB364
Cla006185Cucumber (Gy14) v2cgybwmB217
Cla006185Cucumber (Gy14) v2cgybwmB238
Cla006185Cucumber (Gy14) v2cgybwmB378
Cla006185Melon (DHL92) v3.6.1medwmB456