Cla006185.1 (mRNA) Watermelon (97103) v1

Overview
NameCla006185
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr5 : 8242426 .. 8242656 (+)
Sequence length231
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

mRNA sequence

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Coding sequence (CDS)

ATGGGAAGTTCCGAAAATGAGCAGAGGGGAAGCCGAAGCCGACCGAAGGTCTTGTTTGCGGAATGGCTTTCTGTGACTGATAGTAATGGTGGGAGATCCATGGAAGGAAGCTTTGATGGCGAGGGAGGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGAAACATTTCTGAATGCTTTGCAACTTGTGATGAATTATGGTAA

Protein sequence

MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRTSREGYGFEMLNWDLDFEGNISECFATCDELW
Homology
[Close]
BLAST of Cla006185 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 9.5e-24
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077460|ref|XP_008439216.1| (PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 162 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 221

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 222 DFEGHISDGFATCDELW 236

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 119.4 bits (298), Expect = 2.7e-24
Identity = 59/77 (76.62%), Postives = 67/77 (87.01%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGRT-SREGYGFEMLNWDL 60
           MGSS +++  S +RP+VLFAEWLSV+D N G SMEGSFDGEG RT SREGYGFEMLNWDL
Sbjct: 168 MGSSGSKR--SETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRTTSREGYGFEMLNWDL 227

Query: 61  DFEGNISECFATCDELW 77
           DFEG+IS+ FATCDELW
Sbjct: 228 DFEGHISDGFATCDELW 242

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 153 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 212

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 213 DFEGHISDGFATCDQL 226

[Close]
BLAST of Cla006185 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-23
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 1 

Query: 1   MGSSENEQRGSRSRPKVLFAEWLSVTDSNGGRSMEGSFDGEGGR-TSREGYGFEMLNWDL 60
           MGSS NE+    S+P+VLFAEWLSV+D NGG SMEGSFDGEG R TSREGYGFEMLNWDL
Sbjct: 138 MGSSGNER--IESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYGFEMLNWDL 197

Query: 61  DFEGNISECFATCDEL 76
           DFEG+IS+ FATCD+L
Sbjct: 198 DFEGHISDGFATCDQL 211

The following BLAST results are available for this feature:
BLAST of Cla006185 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6I1_CUCSA9.5e-2477.63Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1[more]
BLAST of Cla006185 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659077460|ref|XP_008439216.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X1 [Cucumis melo][more]
gi|659077462|ref|XP_008439218.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo][more]
gi|659077464|ref|XP_008439219.1|2.7e-2476.62PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo][more]
gi|700202235|gb|KGN57368.1|1.4e-2377.63hypothetical protein Csa_3G182040 [Cucumis sativus][more]
gi|778688544|ref|XP_011652772.1|1.4e-2377.63PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla006185Cla006185gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla006185Cla006185.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla006185.1.cds1Cla006185.1.cds1CDS