CSPI03G16870 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI03G16870
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Myb transcription factor
Location	Chr3 : 12654798 .. 12656631 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAAAAATAGGAAAAACGGAGTATAAAAGGGGAAGACAAAATGAAAAGAGCTTAAACAATAAAAACTTGGTGGAAAATCAAGGAAGAGAAACAGAGATGGGATGTAGAGAAACAGAGAAAGAAAAAGTAAAGAAGAAAGGATTATGGTCACCTGAGGAAGATGAAAAGTTAAGAAGCTTCATCCTCAAGAATGGGCATGGCTGTTGGACTTCTGTCCCCATTAAAGCTGGTGAAGCATGCTTTCTTCCTTTGGCTCCCCCAATCAATCATTATAAACATTAAAATTTTGAACCCTTTTTGGTAATTACAAGTGCAGGATTATTAAGAAACTCAAAGAGCTGCAGATTGAGATGGTTCAATTACTTGAGGCCAGGGTTGAAAAGAGGAATGTTTAGCCAGCAAGAAGATGAGAAAATCTTGACCCTTCATCGCTTGTTAGGCAACAGGTAAATCTAATATCTTTAACTAGTTCGGGTACCATGTTAAAATTATTGATGGATTAGAATGATGATTTCAATTAGGTGGTCTCAAATAGCACAGCATTTAGCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTGGTCTTGAATTTCCAAGATTTGAAAAGTGGAGTTTTTTCGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCAGGAAATGAGCGGATTGAAAGCCAACCGAGGGTCTTGTTTGCAGAATGGCTTTCTGTGTCTGATGTTAATGGCGGGAGCTCCATGGAAGGAAGTTTTGATGGTGAGGGAAGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATCAATTGTGGTAAATTAATCCTTTGCTCTTTCCCAAAATTAAATTTGCAAGAAATATGTTTATTACATGATATCATATATTATTAATTTTGATGTACATCATTCATCGACTTAAAATTTTGTTTTAATTAAAATTCAACCGACTATGTATTCAAACTAACTCGAGCGCAAGAGTAAAATTCTGTTAGGTGATATAATATTAAGTTTATGTGTCCAAACCTCAGCCGACAAGTAACAGAAGATGTTTTACGATATAATATTAAATTTATTTCACTCATTTGTTTAAGTTTTTTATTCAACGAATGATTTTAAAGTTACATTTGAATTGAAAGAAGATTATCTTCTCTACAAACTGTACTTATCATTTTTCTAAGACTAATTTGGTAGAAACAAATTAAAATCTACCTGTATCTTTTGATAGTAGTATTATTTATGAAAGCAAAATGGTTATTAAGCTATGATTTTAGATTTGAAAAAGAAACCGAATGACAAGCCTTGAATTGGTCTTCTAAAAGGGCATATTTTTCTCCCACATATCAATTTGTTTGATTGGAATATCTTTTCTGGTTCGAATGTAGTCGAGAGCAAACGGGCTAAAAGGAGGAAGCAAGAAGCAAGGGCTCGAGAAGGAAGGTCGTTTTATGAGGGTATCCATCATGGACTTGGCAGCTAAGCCTTCGGTAGGGCAAGCCAAATCGTTCAAAGAGATTTCAGTAGCATTTGGTGGGATGGTTGGTTTGAAAGTTAAGAGCTTGGAGTATTCATTTAGAGTATGAAACATGTAATCATACACCTTGTCCATGTTTAGTTGCTCTTCCATGAACTTACTTGCTGCCTTCCCAATTGCTTGTGCCTAACAAGGACATTTAAGAAACATAAATTTTAGCCAATCAAGGTTTTCATAGTTTTTCTCACACAATCTAATAGTGTTAATGTGATTAATCAATCACATTG

mRNA sequence

ATGGGATGTAGAGAAACAGAGAAAGAAAAAGTAAAGAAGAAAGGATTATGGTCACCTGAGGAAGATGAAAAGTTAAGAAGCTTCATCCTCAAGAATGGGCATGGCTGTTGGACTTCTGTCCCCATTAAAGCTGGATTATTAAGAAACTCAAAGAGCTGCAGATTGAGATGGTTCAATTACTTGAGGCCAGGGTTGAAAAGAGGAATGTTTAGCCAGCAAGAAGATGAGAAAATCTTGACCCTTCATCGCTTGTTAGGCAACAGGTGGTCTCAAATAGCACAGCATTTAGCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTGGTCTTGAATTTCCAAGATTTGAAAAGTGGAGTTTTTTCGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCAGGAAATGAGCGGATTGAAAGCCAACCGAGGGTCTTGTTTGCAGAATGGCTTTCTGTGTCTGATGTTAATGGCGGGAGCTCCATGGAAGGAAGTTTTGATGGTGAGGGAAGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATCAATTGTGTCGAGAGCAAACGGGCTAA

Coding sequence (CDS)

ATGGGATGTAGAGAAACAGAGAAAGAAAAAGTAAAGAAGAAAGGATTATGGTCACCTGAGGAAGATGAAAAGTTAAGAAGCTTCATCCTCAAGAATGGGCATGGCTGTTGGACTTCTGTCCCCATTAAAGCTGGATTATTAAGAAACTCAAAGAGCTGCAGATTGAGATGGTTCAATTACTTGAGGCCAGGGTTGAAAAGAGGAATGTTTAGCCAGCAAGAAGATGAGAAAATCTTGACCCTTCATCGCTTGTTAGGCAACAGGTGGTCTCAAATAGCACAGCATTTAGCAGGAAGAACAGACAACGAGATAAAGAACTATTGGAATTCTCATCTGAAGAAGAAAGTGGTCTTGAATTTCCAAGATTTGAAAAGTGGAGTTTTTTCGAATCGAGATCCGCCGTTGGAGGAGATGGGAAGTTCAGGAAATGAGCGGATTGAAAGCCAACCGAGGGTCTTGTTTGCAGAATGGCTTTCTGTGTCTGATGTTAATGGCGGGAGCTCCATGGAAGGAAGTTTTGATGGTGAGGGAAGAAGAACAAGTAGAGAGGGCTATGGTTTTGAGATGCTCAATTGGGACCTTGATTTTGAGGGACACATTTCTGATGGCTTTGCAACTTGTGATCAATTGTGTCGAGAGCAAACGGGCTAA

Homology

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BLAST of CSPI03G16870 vs. Swiss-Prot
Match: LAF1_ARATH (Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2)

HSP 1 Score: 180.3 bits (456), Expect = 2.3e-44
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 13  KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKRGMFSQ 72
           +KGLWSPEEDEKLRSFIL  GH CWT+VPIKAGL RN KSCRLRW NYLRPGLKR M S 
Sbjct: 11  RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISA 70

Query: 73  QEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV--LNFQDLKS 126
           +E+E ILT H  LGN+WSQIA+ L GRTDNEIKNYW+SHLKKK +   + QD KS
Sbjct: 71  EEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKS 125

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BLAST of CSPI03G16870 vs. Swiss-Prot
Match: MYB3_HORVU (Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3)

HSP 1 Score: 162.5 bits (410), Expect = 5.0e-39
Identity = 73/104 (70.19%), Postives = 87/104 (83.65%), Query Frame = 1


Query: 13  KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKRGMFSQ 72
           +KGLWSPEEDEKL + I+++G GCW+SVP  A L R  KSCRLRW NYLRP LKRG FSQ
Sbjct: 15  RKGLWSPEEDEKLYNHIIRHGVGCWSSVPRLAALNRCGKSCRLRWINYLRPDLKRGCFSQ 74

Query: 73  QEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKV 117
           QE++ I+ LH++LGNRWSQIA HL GRTDNEIKN+WNS +KKK+
Sbjct: 75  QEEDHIVALHQILGNRWSQIASHLPGRTDNEIKNFWNSCIKKKL 118

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BLAST of CSPI03G16870 vs. Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.6e-39
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 67
           K+K++ KGLWSPEEDEKL ++I ++GHGCW+SVP  AGL R  KSCRLRW NYLRP LKR
Sbjct: 9   KQKLR-KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 68

Query: 68  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKV 117
           G FSQ E+  I+ LH  LGNRWSQIA  L GRTDNEIKN+WNS LKKK+
Sbjct: 69  GAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116

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BLAST of CSPI03G16870 vs. Swiss-Prot
Match: MYB46_ARATH (Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 9.5e-38
Identity = 77/157 (49.04%), Postives = 99/157 (63.06%), Query Frame = 1


Query: 6   TEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGL 65
           T + K  KKGLWSPEED KL  ++L NG GCW+ V   AGL R  KSCRLRW NYLRP L
Sbjct: 12  THQVKKMKKGLWSPEEDSKLMQYMLSNGQGCWSDVAKNAGLQRCGKSCRLRWINYLRPDL 71

Query: 66  KRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDLKS 125
           KRG FS QE++ I+  H +LGNRWSQIA  L GRTDNEIKN+WNS +KK+ +    D  +
Sbjct: 72  KRGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKR-LKKMSDTSN 131

Query: 126 GVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSD 163
            + ++   P     SS N       + +   ++S+ +
Sbjct: 132 LINNSSSSPNTASDSSSNSASSLDIKDIIGSFMSLQE 167

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BLAST of CSPI03G16870 vs. Swiss-Prot
Match: MYB26_ARATH (Transcription factor MYB26 OS=Arabidopsis thaliana GN=MYB26 PE=2 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-36
Identity = 75/119 (63.03%), Postives = 89/119 (74.79%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAG---------LLRNSKSCRLRWF 67
           K+KVK+ GLWSPEEDEKL ++I   GHGCW+SVP  AG         L R  KSCRLRW 
Sbjct: 9   KQKVKR-GLWSPEEDEKLINYINSYGHGCWSSVPKHAGTYTHIHGFCLQRCGKSCRLRWI 68

Query: 68  NYLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV 118
           NYLRP LKRG FS QE   I+ LH +LGNRW+QIA+HL GRTDNE+KN+WNS +KKK++
Sbjct: 69  NYLRPDLKRGSFSPQEAALIIELHSILGNRWAQIAKHLPGRTDNEVKNFWNSSIKKKLM 126

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BLAST of CSPI03G16870 vs. TrEMBL
Match: A0A0A0L6I1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 3.3e-106
Identity = 191/205 (93.17%), Postives = 194/205 (94.63%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 67
           K  V+ +G  +    EKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR
Sbjct: 23  KNLVENQGRETEMGYEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 82

Query: 68  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDLKSGV 127
           GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQD KSGV
Sbjct: 83  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDFKSGV 142

Query: 128 FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG-RRTSREGYG 187
           FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG RRTSREGYG
Sbjct: 143 FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYG 202

Query: 188 FEMLNWDLDFEGHISDGFATCDQLC 212
           FEMLNWDLDFEGHISDGFATCDQLC
Sbjct: 203 FEMLNWDLDFEGHISDGFATCDQLC 227

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BLAST of CSPI03G16870 vs. TrEMBL
Match: V7BFX6_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G069200g PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 3.3e-53
Identity = 108/188 (57.45%), Postives = 136/188 (72.34%), Query Frame = 1


Query: 1   MGCRETEKEKVK-KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFN 60
           MGC+  EK K K KKGLWSPEED KLR++ILK+GHGCW+SVPIKAGL RN KSCRLRW N
Sbjct: 1   MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWIN 60

Query: 61  YLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV-- 120
           YLRPGLKRG FS+QE+E ILTLH +LGN+WSQI+QHL GRTDNEIKNYW+S+LKKKV   
Sbjct: 61  YLRPGLKRGKFSKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKVAKA 120

Query: 121 --LNFQDLKSGVFSNRDP-----PLEEMGSSGNERI--------ESQPRVLFAEWLSVSD 171
             ++F +      S+ D       L+++ + G +           S P++LFAEWLS+  
Sbjct: 121 KEMDFHNQMKYASSSSDTMDSSNSLQKLATQGTQNFNFTNEACQSSLPKLLFAEWLSLDQ 180

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BLAST of CSPI03G16870 vs. TrEMBL
Match: A0A151U6H0_CAJCA (Transcription factor LAF1 OS=Cajanus cajan GN=KK1_007577 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.4e-51
Identity = 110/197 (55.84%), Postives = 138/197 (70.05%), Query Frame = 1


Query: 1   MGCRETEKEKVK-KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFN 60
           MGC+  EK K K KKGLWSPEED KLR++ILK+GHGCW+SVPIKAGL RN KSCRLRW N
Sbjct: 1   MGCQPLEKAKPKHKKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWIN 60

Query: 61  YLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLN 120
           YLRPGLKRG FS+QE+E IL LH +LGN+WSQI+QHL GRTDNEIKNYW+S+LKK++  +
Sbjct: 61  YLRPGLKRGKFSKQEEETILALHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKRMAKS 120

Query: 121 FQ-----DLKSGVFS----NRDPPLEEMGSSGNERI--------ESQPRVLFAEWLSVSD 180
            +      +K G  S    +     +++ + G +           S P++LFAEWLS+  
Sbjct: 121 KEMEYENQMKYGSSSSDTMDSSHSFQKLATQGPQNYGFNKEACQSSLPKLLFAEWLSLDH 180

[Close]

BLAST of CSPI03G16870 vs. TrEMBL
Match: A0A072W078_MEDTR (Myb transcription factor OS=Medicago truncatula GN=MTR_1g100667 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 3.1e-51
Identity = 120/253 (47.43%), Postives = 147/253 (58.10%), Query Frame = 1


Query: 1   MGCRETEKEKVK-KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFN 60
           MG +  EK K K +KGLWSPEED KLR++ILK+GHGCW+SVPIKAGL RN KSCRLRW N
Sbjct: 1   MGFQPLEKTKPKHRKGLWSPEEDHKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWIN 60

Query: 61  YLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV-- 120
           YLRPGLKRG FS+QE+E ILTLH +LGN+WSQIAQHL GRTDNEIKNYW+S+LKK+V   
Sbjct: 61  YLRPGLKRGKFSKQEEETILTLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKRVAKA 120

Query: 121 ------LNFQDLKSGVFS-NRDPPLEEMGSSGNERIES---------QPRVLFAEWLSVS 180
                   FQ   S   + N  P L+++ +      +S          P++LFAEWLS+ 
Sbjct: 121 MEMESHKQFQYASSSSDTMNSSPSLQKLATQDPHNYKSITKETHQSTLPKLLFAEWLSLD 180

Query: 181 DVNGG--------------------------SSMEGSFDGEGRRTSREGYGFEMLNWDLD 208
            VN                            +  EG F+GE   +       EM N  + 
Sbjct: 181 HVNNNNRNSSNSVESLVMRNGFDQNSAFQEVTMQEGPFNGEFHNSVTNISATEMFNSQIK 240

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BLAST of CSPI03G16870 vs. TrEMBL
Match: A0A0L9TZH9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g212800 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 1.5e-50
Identity = 104/189 (55.03%), Postives = 131/189 (69.31%), Query Frame = 1


Query: 1   MGCRETEKEKVK-KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFN 60
           MGC+  EK K K KKGLWSPEED KLR++ILK GHGCW+SVPIKAGL R+ KSCRLRW N
Sbjct: 1   MGCQPLEKGKPKHKKGLWSPEEDNKLRNYILKQGHGCWSSVPIKAGLQRSGKSCRLRWIN 60

Query: 61  YLRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV-- 120
           YLRPGLKRG F++QE+E ILTLH +LGN+WSQI+QHL GRTDNEIKNYW+S+LKKK    
Sbjct: 61  YLRPGLKRGKFTKQEEETILTLHHMLGNKWSQISQHLPGRTDNEIKNYWHSYLKKKEAKA 120

Query: 121 --------LNFQDLKSGVFSNRDPPLEEMGSSGNERIE--------SQPRVLFAEWLSVS 171
                   + +    S    + +  L+ + + G +           S P++LFAEWLS+ 
Sbjct: 121 KEMDSHNQIKYASSSSDTMESSNS-LKNLATQGTQSCNFTKEASQSSLPKLLFAEWLSLD 180

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BLAST of CSPI03G16870 vs. TAIR10
Match: AT5G52260.1 (AT5G52260.1 myb domain protein 19)

HSP 1 Score: 181.0 bits (458), Expect = 7.7e-46
Identity = 84/138 (60.87%), Postives = 107/138 (77.54%), Query Frame = 1


Query: 12  KKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKRGMFS 71
           ++KGLWSPEED+KL+SFIL  GH CWT+VPI AGL RN KSCRLRW NYLRPGLKRG FS
Sbjct: 12  QRKGLWSPEEDQKLKSFILSRGHACWTTVPILAGLQRNGKSCRLRWINYLRPGLKRGSFS 71

Query: 72  QQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDLKSGVFSNR 131
           ++E+E ILTLH  LGN+WS+IA++L GRTDNEIKNYW+S+LKK+ + +   LKS +    
Sbjct: 72  EEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKRWLKSQPQLKSQISDLT 131

Query: 132 DPPLEEMGSSGNERIESQ 150
           + P   + S G   +E++
Sbjct: 132 ESP-SSLLSCGKRNLETE 148

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BLAST of CSPI03G16870 vs. TAIR10
Match: AT4G25560.1 (AT4G25560.1 myb domain protein 18)

HSP 1 Score: 180.3 bits (456), Expect = 1.3e-45
Identity = 85/115 (73.91%), Postives = 94/115 (81.74%), Query Frame = 1


Query: 13  KKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKRGMFSQ 72
           +KGLWSPEEDEKLRSFIL  GH CWT+VPIKAGL RN KSCRLRW NYLRPGLKR M S 
Sbjct: 11  RKGLWSPEEDEKLRSFILSYGHSCWTTVPIKAGLQRNGKSCRLRWINYLRPGLKRDMISA 70

Query: 73  QEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV--LNFQDLKS 126
           +E+E ILT H  LGN+WSQIA+ L GRTDNEIKNYW+SHLKKK +   + QD KS
Sbjct: 71  EEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKKWLKSQSLQDAKS 125

[Close]

BLAST of CSPI03G16870 vs. TAIR10
Match: AT3G48920.1 (AT3G48920.1 myb domain protein 45)

HSP 1 Score: 177.9 bits (450), Expect = 6.5e-45
Identity = 89/187 (47.59%), Postives = 126/187 (67.38%), Query Frame = 1


Query: 4   RETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRP 63
           RE + ++ ++KGLWSPEEDEKLRS +LK GHGCW+++P++AGL RN KSCRLRW NYLRP
Sbjct: 10  REMKSKEKQRKGLWSPEEDEKLRSHVLKYGHGCWSTIPLQAGLQRNGKSCRLRWVNYLRP 69

Query: 64  GLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVL----- 123
           GLK+ +F++QE+  +L+LH +LGN+WSQI++ L GRTDNEIKNYW+S+LKK V L     
Sbjct: 70  GLKKSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSNLKKGVTLKQHET 129

Query: 124 -----------NFQDLKSGVFSNRDPPLEEMGSSGNERIES-QPRVLFAEWLSVSDVNGG 174
                      + + L+S   + R      +G + N +  S  P ++F+EWL  S +   
Sbjct: 130 TKKHQTPLITNSLEALQSS--TERSSSSINVGETSNAQTSSFSPNLVFSEWLDHSLLMDQ 189

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BLAST of CSPI03G16870 vs. TAIR10
Match: AT1G57560.1 (AT1G57560.1 myb domain protein 50)

HSP 1 Score: 164.9 bits (416), Expect = 5.7e-41
Identity = 82/136 (60.29%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 67
           K+K++ KGLWSPEEDEKL ++I K+GHGCW+SVP  AGL R  KSCRLRW NYLRP LKR
Sbjct: 9   KQKLR-KGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKR 68

Query: 68  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDLKSGV 127
           G FS +E   I+ LH +LGNRWSQIA  L GRTDNEIKN WNS +KKK+      +K G+
Sbjct: 69  GAFSSEEQNLIVELHAVLGNRWSQIAARLPGRTDNEIKNLWNSCIKKKL------MKKGI 128

Query: 128 FSNRDPPLEEMGSSGN 144
                 PL E+G   N
Sbjct: 129 DPITHKPLSEVGKETN 137

[Close]

BLAST of CSPI03G16870 vs. TAIR10
Match: AT5G26660.1 (AT5G26660.1 myb domain protein 86)

HSP 1 Score: 161.8 bits (408), Expect = 4.8e-40
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 67
           K+K++ KGLWSPEEDEKL ++I ++GHGCW+SVP  AGL R  KSCRLRW NYLRP LKR
Sbjct: 9   KQKLR-KGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKR 68

Query: 68  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKV 117
           G FSQ E+  I+ LH  LGNRWSQIA  L GRTDNEIKN+WNS LKKK+
Sbjct: 69  GAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116

[Close]

BLAST of CSPI03G16870 vs. NCBI nr
Match: gi|778688544|ref|XP_011652772.1| (PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus])

HSP 1 Score: 443.7 bits (1140), Expect = 1.8e-121
Identity = 214/217 (98.62%), Postives = 214/217 (98.62%), Query Frame = 1


Query: 1   MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60
           MGCRETEKEKVKKKGL SPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY
Sbjct: 1   MGCRETEKEKVKKKGLXSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60

Query: 61  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNF 120
           LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNF
Sbjct: 61  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNF 120

Query: 121 QDLKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG-RR 180
           QD KSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG RR
Sbjct: 121 QDFKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRR 180

Query: 181 TSREGYGFEMLNWDLDFEGHISDGFATCDQLCREQTG 217
           TSREGYGFEMLNWDLDFEGHISDGFATCDQLCREQTG
Sbjct: 181 TSREGYGFEMLNWDLDFEGHISDGFATCDQLCREQTG 217

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BLAST of CSPI03G16870 vs. NCBI nr
Match: gi|659077466|ref|XP_008439220.1| (PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo])

HSP 1 Score: 394.4 bits (1012), Expect = 1.3e-106
Identity = 194/222 (87.39%), Postives = 201/222 (90.54%), Query Frame = 1


Query: 1   MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60
           MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKRGMFSQQEDEKILTLHRLLGN------RWSQIAQHLAGRTDNEIKNYWNSHLKK 120
           LRPGLKRGMFSQQEDEKILTLHRLLGN      RWSQIAQHLAGRTDNEIKNYWNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVVLNFQDLKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFD 180
           KVV           SNRDPPLE MGSSG++R E++PRVLFAEWLSVSD+N GSSMEGSFD
Sbjct: 156 KVV-----------SNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFD 215

Query: 181 GEGRR-TSREGYGFEMLNWDLDFEGHISDGFATCDQLCREQT 216
           GEGRR TSREGYGFEMLNWDLDFEGHISDGFATCD+LCREQ+
Sbjct: 216 GEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDELCREQS 246

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BLAST of CSPI03G16870 vs. NCBI nr
Match: gi|700202235|gb|KGN57368.1| (hypothetical protein Csa_3G182040 [Cucumis sativus])

HSP 1 Score: 392.5 bits (1007), Expect = 4.8e-106
Identity = 191/205 (93.17%), Postives = 194/205 (94.63%), Query Frame = 1


Query: 8   KEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 67
           K  V+ +G  +    EKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR
Sbjct: 23  KNLVENQGRETEMGYEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNYLRPGLKR 82

Query: 68  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDLKSGV 127
           GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQD KSGV
Sbjct: 83  GMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNFQDFKSGV 142

Query: 128 FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG-RRTSREGYG 187
           FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEG RRTSREGYG
Sbjct: 143 FSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRRRTSREGYG 202

Query: 188 FEMLNWDLDFEGHISDGFATCDQLC 212
           FEMLNWDLDFEGHISDGFATCDQLC
Sbjct: 203 FEMLNWDLDFEGHISDGFATCDQLC 227

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BLAST of CSPI03G16870 vs. NCBI nr
Match: gi|659077462|ref|XP_008439218.1| (PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo])

HSP 1 Score: 390.6 bits (1002), Expect = 1.8e-105
Identity = 190/211 (90.05%), Postives = 196/211 (92.89%), Query Frame = 1


Query: 1   MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60
           MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVVLNF 120
           LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV   
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRWSQIAQHLAGRTDNEIKNYWNSHLKKKVV--- 155

Query: 121 QDLKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFDGEGRR- 180
                   SNRDPPLE MGSSG++R E++PRVLFAEWLSVSD+N GSSMEGSFDGEGRR 
Sbjct: 156 --------SNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFDGEGRRT 215

Query: 181 TSREGYGFEMLNWDLDFEGHISDGFATCDQL 211
           TSREGYGFEMLNWDLDFEGHISDGFATCD+L
Sbjct: 216 TSREGYGFEMLNWDLDFEGHISDGFATCDEL 235

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BLAST of CSPI03G16870 vs. NCBI nr
Match: gi|659077464|ref|XP_008439219.1| (PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo])

HSP 1 Score: 384.0 bits (985), Expect = 1.7e-103
Identity = 190/217 (87.56%), Postives = 196/217 (90.32%), Query Frame = 1


Query: 1   MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 60
           MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY
Sbjct: 36  MGCRETEKEKVKKKGLWSPEEDEKLRSFILKNGHGCWTSVPIKAGLLRNSKSCRLRWFNY 95

Query: 61  LRPGLKRGMFSQQEDEKILTLHRLLGN------RWSQIAQHLAGRTDNEIKNYWNSHLKK 120
           LRPGLKRGMFSQQEDEKILTLHRLLGN      RWSQIAQHLAGRTDNEIKNYWNSHLKK
Sbjct: 96  LRPGLKRGMFSQQEDEKILTLHRLLGNRMMISIRWSQIAQHLAGRTDNEIKNYWNSHLKK 155

Query: 121 KVVLNFQDLKSGVFSNRDPPLEEMGSSGNERIESQPRVLFAEWLSVSDVNGGSSMEGSFD 180
           KVV           SNRDPPLE MGSSG++R E++PRVLFAEWLSVSD+N GSSMEGSFD
Sbjct: 156 KVV-----------SNRDPPLEGMGSSGSKRSETRPRVLFAEWLSVSDINSGSSMEGSFD 215

Query: 181 GEGRR-TSREGYGFEMLNWDLDFEGHISDGFATCDQL 211
           GEGRR TSREGYGFEMLNWDLDFEGHISDGFATCD+L
Sbjct: 216 GEGRRTTSREGYGFEMLNWDLDFEGHISDGFATCDEL 241

The following BLAST results are available for this feature:

BLAST of CSPI03G16870 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LAF1_ARATH	2.3e-44	73.91	Transcription factor LAF1 OS=Arabidopsis thaliana GN=LAF1 PE=1 SV=2	[more]
MYB3_HORVU	5.0e-39	70.19	Myb-related protein Hv33 OS=Hordeum vulgare GN=MYB2 PE=2 SV=3	[more]
MYB86_ARATH	8.6e-39	69.72	Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1	[more]
MYB46_ARATH	9.5e-38	49.04	Transcription factor MYB46 OS=Arabidopsis thaliana GN=MYB46 PE=2 SV=1	[more]
MYB26_ARATH	1.8e-36	63.03	Transcription factor MYB26 OS=Arabidopsis thaliana GN=MYB26 PE=2 SV=1	[more]

BLAST of CSPI03G16870 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6I1_CUCSA	3.3e-106	93.17	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G182040 PE=4 SV=1	[more]
V7BFX6_PHAVU	3.3e-53	57.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_007G069200g PE=4 SV=1	[more]
A0A151U6H0_CAJCA	1.4e-51	55.84	Transcription factor LAF1 OS=Cajanus cajan GN=KK1_007577 PE=4 SV=1	[more]
A0A072W078_MEDTR	3.1e-51	47.43	Myb transcription factor OS=Medicago truncatula GN=MTR_1g100667 PE=4 SV=1	[more]
A0A0L9TZH9_PHAAN	1.5e-50	55.03	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan02g212800 PE=4 SV=1	[more]

BLAST of CSPI03G16870 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G52260.1	7.7e-46	60.87	myb domain protein 19	[more]
AT4G25560.1	1.3e-45	73.91	myb domain protein 18	[more]
AT3G48920.1	6.5e-45	47.59	myb domain protein 45	[more]
AT1G57560.1	5.7e-41	60.29	myb domain protein 50	[more]
AT5G26660.1	4.8e-40	69.72	myb domain protein 86	[more]

BLAST of CSPI03G16870 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688544\|ref\|XP_011652772.1\|	1.8e-121	98.62	PREDICTED: LOW QUALITY PROTEIN: transcription factor LAF1-like [Cucumis sativus]	[more]
gi\|659077466\|ref\|XP_008439220.1\|	1.3e-106	87.39	PREDICTED: transcription factor LAF1-like isoform X4 [Cucumis melo]	[more]
gi\|700202235\|gb\|KGN57368.1\|	4.8e-106	93.17	hypothetical protein Csa_3G182040 [Cucumis sativus]	[more]
gi\|659077462\|ref\|XP_008439218.1\|	1.8e-105	90.05	PREDICTED: transcription factor LAF1-like isoform X2 [Cucumis melo]	[more]
gi\|659077464\|ref\|XP_008439219.1\|	1.7e-103	87.56	PREDICTED: transcription factor LAF1-like isoform X3 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001005	SANT/Myb
IPR009057	Homeobox-like_sf
IPR017930	Myb_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI03G16870.1	CSPI03G16870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..61 score: 7.2E-13coord: 67..112 score: 6.1
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 66..114 score: 1.6E-15coord: 13..63 score: 7.9
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 69..116 score: 1.2E-26coord: 15..68 score: 1.7
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 12..108 score: 2.53
IPR017930	Myb domain	PROFILE	PS51294	HTH_MYB	coord: 9..61 score: 14.866coord: 62..116 score: 25
None	No IPR available	PANTHER	PTHR10641	MYB-LIKE DNA-BINDING PROTEIN MYB	coord: 1..150 score: 3.3
None	No IPR available	PANTHER	PTHR10641:SF563	MYB TRANSCRIPTION FACTOR-RELATED	coord: 1..150 score: 3.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI03G16870	Cla006186	Watermelon (97103) v1	cpiwmB231
CSPI03G16870	Csa3G182040	Cucumber (Chinese Long) v2	cpicuB120
CSPI03G16870	ClCG05G007990	Watermelon (Charleston Gray)	cpiwcgB226
CSPI03G16870	MELO3C031809.2	Melon (DHL92) v3.6.1	cpimedB224
CSPI03G16870	CsaV3_3G017040	Cucumber (Chinese Long) v3	cpicucB144
CSPI03G16870	Cla97C05G090020	Watermelon (97103) v2	cpiwmbB209
CSPI03G16870	Bhi01G000967	Wax gourd	cpiwgoB286
CSPI03G16870	Cucsa.107730	Cucumber (Gy14) v1	cgycpiB133
CSPI03G16870	CmaCh02G010610	Cucurbita maxima (Rimu)	cmacpiB601
CSPI03G16870	CmoCh02G010780	Cucurbita moschata (Rifu)	cmocpiB589
CSPI03G16870	Carg08417	Silver-seed gourd	carcpiB0745

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI03G16870	Cucumber (Gy14) v2	cgybcpiB110
CSPI03G16870	Cucumber (Gy14) v2	cgybcpiB213
CSPI03G16870	Silver-seed gourd	carcpiB0771
CSPI03G16870	Silver-seed gourd	carcpiB0955
CSPI03G16870	Silver-seed gourd	carcpiB1027
CSPI03G16870	Cucumber (Chinese Long) v3	cpicucB169
CSPI03G16870	Watermelon (97103) v2	cpiwmbB181
CSPI03G16870	Watermelon (97103) v2	cpiwmbB232
CSPI03G16870	Wax gourd	cpiwgoB254
CSPI03G16870	Wax gourd	cpiwgoB302
CSPI03G16870	Wild cucumber (PI 183967)	cpicpiB105
CSPI03G16870	Wild cucumber (PI 183967)	cpicpiB116
CSPI03G16870	Cucumber (Gy14) v1	cgycpiB382
CSPI03G16870	Cucumber (Gy14) v1	cgycpiB453
CSPI03G16870	Cucurbita maxima (Rimu)	cmacpiB253
CSPI03G16870	Cucurbita maxima (Rimu)	cmacpiB335
CSPI03G16870	Cucurbita maxima (Rimu)	cmacpiB413
CSPI03G16870	Cucurbita moschata (Rifu)	cmocpiB242
CSPI03G16870	Cucurbita moschata (Rifu)	cmocpiB325
CSPI03G16870	Cucurbita moschata (Rifu)	cmocpiB401
CSPI03G16870	Cucurbita moschata (Rifu)	cmocpiB891
CSPI03G16870	Cucumber (Chinese Long) v2	cpicuB141
CSPI03G16870	Melon (DHL92) v3.5.1	cpimeB163
CSPI03G16870	Melon (DHL92) v3.5.1	cpimeB230
CSPI03G16870	Watermelon (Charleston Gray)	cpiwcgB209
CSPI03G16870	Watermelon (Charleston Gray)	cpiwcgB210
CSPI03G16870	Watermelon (97103) v1	cpiwmB261
CSPI03G16870	Watermelon (97103) v1	cpiwmB265
CSPI03G16870	Cucurbita pepo (Zucchini)	cpecpiB034
CSPI03G16870	Cucurbita pepo (Zucchini)	cpecpiB217
CSPI03G16870	Cucurbita pepo (Zucchini)	cpecpiB721
CSPI03G16870	Cucurbita pepo (Zucchini)	cpecpiB725
CSPI03G16870	Bottle gourd (USVL1VR-Ls)	cpilsiB155
CSPI03G16870	Bottle gourd (USVL1VR-Ls)	cpilsiB205
CSPI03G16870	Bottle gourd (USVL1VR-Ls)	cpilsiB208
CSPI03G16870	Melon (DHL92) v3.6.1	cpimedB154