Carg24920 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24920
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Transcriptional repressor NrdR like
Location	Cucurbita_argyrosperma_scaffold_227 : 294762 .. 295178 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTGCAAGATCAAGGAGCTTCCGCCTCGGGCGGCTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCGTTGAAAGTTTTAGCGAGGTTCCACGACGCGTATGTAAAGATGATGACGAGGGTGGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACCTCGTAATCAAATTTCTCTTGTTTCTTGTGGTGGGGAACAAGTTGACGCTAAGTTGGTGTTGGAAATCTATAACAAACTTGCTGTTTCCAAGAACTTGAGACAAAGATGTGATTCAAATGTATAG

mRNA sequence

ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTGCAAGATCAAGGAGCTTCCGCCTCGGGCGGCTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCGTTGAAAGTTTTAGCGAGGTTCCACGACGCGTATGTAAAGATGATGACGAGGGTGGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACCTCGTAATCAAATTTCTCTTGTTTCTTGTGGTGGGGAACAAGTTGACGCTAAGTTGGTGTTGGAAATCTATAACAAACTTGCTGTTTCCAAGAACTTGAGACAAAGATGTGATTCAAATGTATAG

Coding sequence (CDS)

ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTGCAAGATCAAGGAGCTTCCGCCTCGGGCGGCTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCGTTGAAAGTTTTAGCGAGGTTCCACGACGCGTATGTAAAGATGATGACGAGGGTGGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACCTCGTAATCAAATTTCTCTTGTTTCTTGTGGTGGGGAACAAGTTGACGCTAAGTTGGTGTTGGAAATCTATAACAAACTTGCTGTTTCCAAGAACTTGAGACAAAGATGTGATTCAAATGTATAG

Protein sequence

MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEIYNKLAVSKNLRQRCDSNV

Homology

[Close]

BLAST of Carg24920 vs. NCBI nr
Match: XP_022939174.1 (uncharacterized protein LOC111445168 [Cucurbita moschata])

HSP 1 Score: 242.3 bits (617), Expect = 9.9e-61
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLK 60
           MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSF LGRLWRMRRRAPKLRLKMA P K
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFHLGRLWRMRRRAPKLRLKMALPFK 60

Query: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEI 120
            LARFHDAYVKMMTRVAN VGNMYAIGGFGNGKRIPKPRNQ+SLVSCGGEQVDAKLVLE+
Sbjct: 61  ALARFHDAYVKMMTRVANKVGNMYAIGGFGNGKRIPKPRNQVSLVSCGGEQVDAKLVLEM 120

Query: 121 YNKLAVSKNL 131
           YNKLA SKNL
Sbjct: 121 YNKLAASKNL 130

[Close]

BLAST of Carg24920 vs. NCBI nr
Match: XP_023550637.1 (uncharacterized protein LOC111808720 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 239.2 bits (609), Expect = 8.4e-60
Identity = 122/130 (93.85%), Postives = 124/130 (95.38%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLK 60
           MDIIATPSALSLKRLWRRRRYQRLGSGTGA RSRSF LGRLWRMRRRAPKLRLKMASPLK
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRSRSFHLGRLWRMRRRAPKLRLKMASPLK 60

Query: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEI 120
           VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPK  NQ+SLV CGGEQVDAKLVLE+
Sbjct: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAKLVLEM 120

Query: 121 YNKLAVSKNL 131
           YNKLA SKNL
Sbjct: 121 YNKLAASKNL 130

[Close]

BLAST of Carg24920 vs. NCBI nr
Match: XP_022993314.1 (uncharacterized protein LOC111489358 [Cucurbita maxima])

HSP 1 Score: 234.6 bits (597), Expect = 2.1e-58
Identity = 117/130 (90.00%), Postives = 123/130 (94.62%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLK 60
           MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWR+RRRAPKLRLKM SP K
Sbjct: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRIRRRAPKLRLKMVSPFK 60

Query: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEI 120
            LARFHDAYVKMM RVAN+VG+MYAIGG+GNGKRIPKP NQ+SLVSCGGEQVD KLVLE+
Sbjct: 61  ALARFHDAYVKMMMRVANSVGSMYAIGGYGNGKRIPKPSNQVSLVSCGGEQVDTKLVLEM 120

Query: 121 YNKLAVSKNL 131
           YNKLA SKNL
Sbjct: 121 YNKLAASKNL 130

[Close]

BLAST of Carg24920 vs. NCBI nr
Match: XP_022152306.1 (uncharacterized protein LOC111020054 [Momordica charantia])

HSP 1 Score: 206.1 bits (523), Expect = 7.8e-50
Identity = 105/133 (78.95%), Postives = 115/133 (86.47%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLK 60
           M+IIATPS+ S++R WRRR+YQRLGS  G  RSRSFRLGRLWRMRR AP+LR KMASPLK
Sbjct: 1   MEIIATPSSESIRRTWRRRKYQRLGSSNGPTRSRSFRLGRLWRMRRGAPRLRFKMASPLK 60

Query: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNG---KRIPKPRNQISLVSCGGEQVDAKLV 120
           +LARFHDAYV+MM RVAN VGNMYAIG FG G   + IPKP NQ+SLVSCGGEQVDAKLV
Sbjct: 61  LLARFHDAYVEMMMRVANGVGNMYAIGAFGGGGKRRMIPKPGNQVSLVSCGGEQVDAKLV 120

Query: 121 LEIYNKLAVSKNL 131
           LEIYNKLA SKNL
Sbjct: 121 LEIYNKLAASKNL 133

[Close]

BLAST of Carg24920 vs. NCBI nr
Match: XP_022959367.1 (uncharacterized protein LOC111460357 [Cucurbita moschata])

HSP 1 Score: 196.1 bits (497), Expect = 8.1e-47
Identity = 97/130 (74.62%), Postives = 112/130 (86.15%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLGRLWRMRRRAPKLRLKMASPLK 60
           MDIIATPSA  ++RLWRRR YQ+LGS T   RSRSFRL RLW MRR+A K++LK+ASPLK
Sbjct: 1   MDIIATPSAQGMRRLWRRRGYQKLGSDTRPTRSRSFRLRRLWHMRRQASKVQLKIASPLK 60

Query: 61  VLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEI 120
           +LA+FHD YV+MM +VAN+VGN+YAIG FGNGKRIPKPRNQ+SL +C GE VDAK VLEI
Sbjct: 61  LLAKFHDTYVEMMMKVANSVGNIYAIGAFGNGKRIPKPRNQVSLATCDGEHVDAKFVLEI 120

Query: 121 YNKLAVSKNL 131
           YNKLA SKNL
Sbjct: 121 YNKLAPSKNL 130

[Close]

BLAST of Carg24920 vs. TAIR10
Match: AT3G62650.2 (unknown protein)

HSP 1 Score: 49.3 bits (116), Expect = 2.2e-06
Identity = 47/126 (37.30%), Postives = 66/126 (52.38%), Query Frame = 0


Query: 13  KRLWRR-RRYQRL--GSGTGAARSRSFRL-------GRLWRMRRRAPKLR-LKMASPLKV 72
           KR WRR R Y++L   S T + R +  R+        R WR+ +  PKLR LK ASP K 
Sbjct: 6   KRYWRRWRGYEKLDGSSETTSGRRKGKRVKMDPTRKKRFWRI-KIVPKLRILKTASPKKF 65

Query: 73  LARFHDAYVKMMTRVANN--VGNM-YAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVL 125
           L    D+YVKMM R+AN+  VG+  Y   GFG+G+                ++ D K+++
Sbjct: 66  LVWLRDSYVKMMMRLANSRVVGSSGYGGSGFGSGQM---------------KEYDEKMLV 115

[Close]

BLAST of Carg24920 vs. TrEMBL
Match: tr|A0A0A0KV01|A0A0A0KV01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576730 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.7e-41
Identity = 95/135 (70.37%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAA-----RSRSFRLGRLWRMRRR-APKLRLK 60
           MDIIAT SA +L+RLWRRR YQRLGSG   +      SRSFR+GR+  MRRR +PK+RLK
Sbjct: 1   MDIIATSSAQNLRRLWRRRAYQRLGSGNNMSTVTTRSSRSFRVGRMMIMRRRVSPKIRLK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDA 120
           ++SPLKV+A+ HDAYV+MM R+AN+VGNMYAIGGFGN KRIPKP+NQ+ L   GGEQ+DA
Sbjct: 61  VSSPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDA 120

Query: 121 KLVLEIYNKLAVSKN 130
           KLVLEIYNKLA SKN
Sbjct: 121 KLVLEIYNKLAASKN 132

[Close]

BLAST of Carg24920 vs. TrEMBL
Match: tr|A0A1S3CSX3|A0A1S3CSX3_CUCME (uncharacterized protein LOC103504591 OS=Cucumis melo OX=3656 GN=LOC103504591 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 1.7e-40
Identity = 99/134 (73.88%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSG---TGAARS-RSFRLGRLWRMRRRA-PKLRLKM 60
           MDIIAT SA +L+RLWRRR YQRL SG   T   RS RSFR+GR+  MRRRA PKLRLKM
Sbjct: 1   MDIIATSSAQNLRRLWRRRTYQRLRSGSNDTVPTRSLRSFRVGRMMIMRRRASPKLRLKM 60

Query: 61  ASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAK 120
           +SPLKV+A+ HDAYV+MM R+AN+VGNMYAIGGFGN KRIPKP+NQ+ L   GGEQ+DAK
Sbjct: 61  SSPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDAK 120

Query: 121 LVLEIYNKLAVSKN 130
           LVLEIYNKLA SKN
Sbjct: 121 LVLEIYNKLASSKN 131

[Close]

BLAST of Carg24920 vs. TrEMBL
Match: tr|B9SJX2|B9SJX2_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0577330 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 5.4e-23
Identity = 67/137 (48.91%), Postives = 93/137 (67.88%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARS-RSFRLG-----RLWRMRRRAPKLRLK 60
           M++I++    +LKR WRRRRYQRL   T + R  +  RLG     R+W++R  APKL+ K
Sbjct: 1   MEMISSACYDTLKRCWRRRRYQRLHCSTNSKRKLKIIRLGGAATRRIWKLRTTAPKLQWK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDA 120
           + SP+++L  FHDAYV MM R+ANN+G +   G FG  K+  K + QIS+VSC GE+VD 
Sbjct: 61  LLSPVRILVNFHDAYVDMMIRLANNMGKLNGRGVFGR-KKFAKDK-QISMVSC-GEEVDT 120

Query: 121 KLVLEIYNKLAVSKNLR 132
           +LVLEIY +L  ++ LR
Sbjct: 121 RLVLEIYKRLVAARELR 134

[Close]

BLAST of Carg24920 vs. TrEMBL
Match: tr|M5Y1B9|M5Y1B9_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G317700 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-21
Identity = 68/140 (48.57%), Postives = 92/140 (65.71%), Query Frame = 0


Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAARSRSFRLG---------RLWRMRRRAPKL 60
           M+I+ T    +LKR WRRRRYQRL +G    + R  RLG         R+W++R   PKL
Sbjct: 1   MEIVPTTHYDNLKRYWRRRRYQRL-NGDTKKKMRVTRLGGANGSKTTRRVWKLRSAIPKL 60

Query: 61  RL-KMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGE 120
           RL K  SP+K+LA+FHDAYV MM R+A N  ++    G  +GK++ K ++QIS+ SC GE
Sbjct: 61  RLMKFLSPIKLLAKFHDAYVDMMYRIAGNAASV----GRVSGKKVAKAQDQISIASC-GE 120

Query: 121 QVDAKLVLEIYNKLAVSKNL 131
           +VD +LVLEIY +LA S+ L
Sbjct: 121 EVDGRLVLEIYKRLAASRQL 134

[Close]

BLAST of Carg24920 vs. TrEMBL
Match: tr|M5Y361|M5Y361_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G317600 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 3.9e-21
Identity = 68/127 (53.54%), Postives = 88/127 (69.29%), Query Frame = 0


Query: 11  SLKRLWRRRRYQRLGSGTGAARSRSFRLG------RLWRMRRRAPKLRL-KMASPLKVLA 70
           +LKR WRRRRYQRL +G    + R  RLG      R+W++R   PKLRL K  SPLK+L 
Sbjct: 11  NLKRYWRRRRYQRL-NGDTKKKMRVTRLGGAKTTRRIWKLRSAMPKLRLMKFVSPLKLLT 70

Query: 71  RFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKPRNQISLVSCGGEQVDAKLVLEIYNK 130
           +FHDAYV MM R+A   GN  +IGG  +GK++ K ++QIS+ SC GE+VD +LVLEIY +
Sbjct: 71  KFHDAYVDMMYRMA---GNAASIGGV-SGKKVAKAQDQISIASC-GEEVDGRLVLEIYKR 130

The following BLAST results are available for this feature:

BLAST of Carg24920 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939174.1	9.9e-61	93.85	uncharacterized protein LOC111445168 [Cucurbita moschata]	[more]
XP_023550637.1	8.4e-60	93.85	uncharacterized protein LOC111808720 [Cucurbita pepo subsp. pepo]	[more]
XP_022993314.1	2.1e-58	90.00	uncharacterized protein LOC111489358 [Cucurbita maxima]	[more]
XP_022152306.1	7.8e-50	78.95	uncharacterized protein LOC111020054 [Momordica charantia]	[more]
XP_022959367.1	8.1e-47	74.62	uncharacterized protein LOC111460357 [Cucurbita moschata]	[more]

BLAST of Carg24920 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G62650.2	2.2e-06	37.30	unknown protein	[more]

BLAST of Carg24920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24920 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KV01\|A0A0A0KV01_CUCSA	5.7e-41	70.37	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G576730 PE=4 SV=1	[more]
tr\|A0A1S3CSX3\|A0A1S3CSX3_CUCME	1.7e-40	73.88	uncharacterized protein LOC103504591 OS=Cucumis melo OX=3656 GN=LOC103504591 PE=...	[more]
tr\|B9SJX2\|B9SJX2_RICCO	5.4e-23	48.91	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_0577330 PE=4 SV=1	[more]
tr\|M5Y1B9\|M5Y1B9_PRUPE	1.0e-21	48.57	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G317700 PE=4 SV=1	[more]
tr\|M5Y361\|M5Y361_PRUPE	3.9e-21	53.54	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G317600 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24920-RA	Carg24920-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33702	FAMILY NOT NAMED	coord: 1..130
None	No IPR available	PANTHER	PTHR33702:SF2	SUBFAMILY NOT NAMED	coord: 1..130

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24920	Cla003896	Watermelon (97103) v1	carwmB0793
Carg24920	Csa5G576730	Cucumber (Chinese Long) v2	carcuB0810
Carg24920	MELO3C005337	Melon (DHL92) v3.5.1	carmeB0791
Carg24920	ClCG01G005940	Watermelon (Charleston Gray)	carwcgB0767
Carg24920	CSPI05G19930	Wild cucumber (PI 183967)	carcpiB0829
Carg24920	Cucsa.280680	Cucumber (Gy14) v1	carcgyB0905
Carg24920	CmaCh15G009300	Cucurbita maxima (Rimu)	carcmaB1101
Carg24920	CmoCh15G009700	Cucurbita moschata (Rifu)	carcmoB1071
Carg24920	Cp4.1LG13g06860	Cucurbita pepo (Zucchini)	carcpeB1111
Carg24920	Cp4.1LG01g18150	Cucurbita pepo (Zucchini)	carcpeB1112
Carg24920	CsGy5G019440	Cucumber (Gy14) v2	carcgybB0785
Carg24920	MELO3C005337.2	Melon (DHL92) v3.6.1	carmedB0803
Carg24920	CsaV3_5G028760	Cucumber (Chinese Long) v3	carcucB0833
Carg24920	Cla97C01G006200	Watermelon (97103) v2	carwmbB0830
Carg24920	Bhi12G000741	Wax gourd	carwgoB0928

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24920	Silver-seed gourd	carcarB617
Carg24920	Silver-seed gourd	carcarB618
Carg24920	Cucurbita maxima (Rimu)	carcmaB1103
Carg24920	Cucurbita maxima (Rimu)	carcmaB1102
Carg24920	Cucurbita moschata (Rifu)	carcmoB1072
Carg24920	Wild cucumber (PI 183967)	carcpiB0830
Carg24920	Cucumber (Chinese Long) v2	carcuB0811
Carg24920	Cucumber (Chinese Long) v3	carcucB0834
Carg24920	Bottle gourd (USVL1VR-Ls)	carlsiB730
Carg24920	Melon (DHL92) v3.5.1	carmeB0792
Carg24920	Melon (DHL92) v3.6.1	carmedB0804
Carg24920	Watermelon (Charleston Gray)	carwcgB0768
Carg24920	Watermelon (97103) v1	carwmB0792
Carg24920	Watermelon (97103) v2	carwmbB0831
Carg24920	Wax gourd	carwgoB0929