Cp4.1LG13g06860 (gene) Cucurbita pepo (Zucchini)

NameCp4.1LG13g06860
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 4251883 .. 4252284 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTCCAAGATCAAGGAGCTTCCATCTCGGGCGACTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCATTGAAAGTTTTAGCGAGGTTCCACGACGCATATGTAAAGATGATGACGAGGGTCGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACTTGGTAATCAAGTGTCTTTGGTTTATTGTGGTGGGGAACAAGTTGACGCCAAGTTGGTGTTGGAAATGTATAACAAACTTGCTGCTTCCAAGAACTTGACCGTAGCATAG

mRNA sequence

ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTCCAAGATCAAGGAGCTTCCATCTCGGGCGACTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCATTGAAAGTTTTAGCGAGGTTCCACGACGCATATGTAAAGATGATGACGAGGGTCGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACTTGGTAATCAAGTGTCTTTGGTTTATTGTGGTGGGGAACAAGTTGACGCCAAGTTGGTGTTGGAAATGTATAACAAACTTGCTGCTTCCAAGAACTTGACCGTAGCATAG

Coding sequence (CDS)

ATGGATATTATAGCAACCCCATCAGCTCTAAGCTTGAAGAGGCTATGGAGAAGAAGAAGATACCAAAGACTAGGAAGCGGCACGGGCGCTCCAAGATCAAGGAGCTTCCATCTCGGGCGACTATGGCGGATGAGACGACGAGCTCCGAAACTACGGTTGAAAATGGCATCCCCATTGAAAGTTTTAGCGAGGTTCCACGACGCATATGTAAAGATGATGACGAGGGTCGCGAATAATGTGGGGAATATGTATGCCATTGGAGGCTTTGGAAATGGGAAGAGGATACCAAAACTTGGTAATCAAGTGTCTTTGGTTTATTGTGGTGGGGAACAAGTTGACGCCAAGTTGGTGTTGGAAATGTATAACAAACTTGCTGCTTCCAAGAACTTGACCGTAGCATAG

Protein sequence

MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRSRSFHLGRLWRMRRRAPKLRLKMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAKLVLEMYNKLAASKNLTVA
BLAST of Cp4.1LG13g06860 vs. TrEMBL
Match: A0A0A0KV01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576730 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.6e-39
Identity = 94/135 (69.63%), Postives = 109/135 (80.74%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPR-----SRSFHLGRLWRMRRR-APKLRLK 60
           MDIIAT SA +L+RLWRRR YQRLGSG          SRSF +GR+  MRRR +PK+RLK
Sbjct: 1   MDIIATSSAQNLRRLWRRRAYQRLGSGNNMSTVTTRSSRSFRVGRMMIMRRRVSPKIRLK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDA 120
           ++SPLKV+A+ HDAYV+MM R+AN+VGNMYAIGGFGN KRIPK  NQV L   GGEQ+DA
Sbjct: 61  VSSPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDA 120

Query: 121 KLVLEMYNKLAASKN 130
           KLVLE+YNKLAASKN
Sbjct: 121 KLVLEIYNKLAASKN 132

BLAST of Cp4.1LG13g06860 vs. TrEMBL
Match: B9SJX2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577330 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.0e-21
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRS-RSFHLG-----RLWRMRRRAPKLRLK 60
           M++I++    +LKR WRRRRYQRL   T + R  +   LG     R+W++R  APKL+ K
Sbjct: 1   MEMISSACYDTLKRCWRRRRYQRLHCSTNSKRKLKIIRLGGAATRRIWKLRTTAPKLQWK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDA 120
           + SP+++L  FHDAYV MM R+ANN+G +   G FG  K+  K   Q+S+V C GE+VD 
Sbjct: 61  LLSPVRILVNFHDAYVDMMIRLANNMGKLNGRGVFGR-KKFAK-DKQISMVSC-GEEVDT 120

Query: 121 KLVLEMYNKLAASKNL 131
           +LVLE+Y +L A++ L
Sbjct: 121 RLVLEIYKRLVAAREL 133

BLAST of Cp4.1LG13g06860 vs. TrEMBL
Match: M5Y1B9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017730mg PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 7.7e-21
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRSRSFHLG---------RLWRMRRRAPKL 60
           M+I+ T    +LKR WRRRRYQRL   T   + R   LG         R+W++R   PKL
Sbjct: 1   MEIVPTTHYDNLKRYWRRRRYQRLNGDT-KKKMRVTRLGGANGSKTTRRVWKLRSAIPKL 60

Query: 61  RL-KMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGE 120
           RL K  SP+K+LA+FHDAYV MM R+A N  ++    G  +GK++ K  +Q+S+  C GE
Sbjct: 61  RLMKFLSPIKLLAKFHDAYVDMMYRIAGNAASV----GRVSGKKVAKAQDQISIASC-GE 120

Query: 121 QVDAKLVLEMYNKLAASKNLTV 133
           +VD +LVLE+Y +LAAS+ L +
Sbjct: 121 EVDGRLVLEIYKRLAASRQLLI 136

BLAST of Cp4.1LG13g06860 vs. TrEMBL
Match: M5Y361_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013192mg PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 2.9e-20
Identity = 65/129 (50.39%), Postives = 86/129 (66.67%), Query Frame = 1

Query: 11  SLKRLWRRRRYQRLGSGTGAPRSRSFHLG------RLWRMRRRAPKLRL-KMASPLKVLA 70
           +LKR WRRRRYQRL   T   + R   LG      R+W++R   PKLRL K  SPLK+L 
Sbjct: 11  NLKRYWRRRRYQRLNGDT-KKKMRVTRLGGAKTTRRIWKLRSAMPKLRLMKFVSPLKLLT 70

Query: 71  RFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAKLVLEMYNK 130
           +FHDAYV MM R+A   GN  +IGG  +GK++ K  +Q+S+  C GE+VD +LVLE+Y +
Sbjct: 71  KFHDAYVDMMYRMA---GNAASIGGV-SGKKVAKAQDQISIASC-GEEVDGRLVLEIYKR 130

Query: 131 LAASKNLTV 133
           LAAS+ L +
Sbjct: 131 LAASRQLLI 133

BLAST of Cp4.1LG13g06860 vs. TrEMBL
Match: B9HWC5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12920g PE=4 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.1e-18
Identity = 57/130 (43.85%), Postives = 89/130 (68.46%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRL-GSGTGAPRSRSFHLGRLWRMRRRAPKLRLKMASPL 60
           M+II++    ++KR WRR RYQRL G+     +      GR W++R   PKL +++ASP+
Sbjct: 1   MEIISSACYENVKRYWRRNRYQRLNGASKRKLKIARLGSGRRWKLRA-VPKLHMEIASPI 60

Query: 61  KVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAKLVLE 120
           K+LA+FHDAY+ MM R+A N+G++    GF  GK++ K    +S+V   G++VD++L+LE
Sbjct: 61  KLLAKFHDAYIDMMLRLATNIGSLNN-KGFFRGKKVAK-DQHISMV-SSGDEVDSRLLLE 120

Query: 121 MYNKLAASKN 130
           +Y KLAAS++
Sbjct: 121 IYKKLAASRD 126

BLAST of Cp4.1LG13g06860 vs. TAIR10
Match: AT2G47485.1 (AT2G47485.1 unknown protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.6e-06
Identity = 50/132 (37.88%), Postives = 63/132 (47.73%), Query Frame = 1

Query: 14  RLWRRRR-YQRL-GSGTGAPRSRS---------FHLGRLWRMRRRAPKLR-LKMASPLKV 73
           R WRR R YQRL GS   A   R              R WR++   PKLR LK ASP K+
Sbjct: 4   RYWRRLRGYQRLDGSAKKASSGRRNVKRVKMDPTRKRRFWRIKI-VPKLRILKKASPKKL 63

Query: 74  LARFHDAYVKMMTRVANN--VGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAKLVLE 131
           L    DAYV MM R+AN+  VG+ Y  G +G G  +              ++ D K ++E
Sbjct: 64  LTWLRDAYVNMMLRLANSRVVGSSYGYGEYGYGSGL------------ASKEYDEKKLVE 122

BLAST of Cp4.1LG13g06860 vs. NCBI nr
Match: gi|778708618|ref|XP_011656247.1| (PREDICTED: uncharacterized protein LOC105435696 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.4e-39
Identity = 94/135 (69.63%), Postives = 109/135 (80.74%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPR-----SRSFHLGRLWRMRRR-APKLRLK 60
           MDIIAT SA +L+RLWRRR YQRLGSG          SRSF +GR+  MRRR +PK+RLK
Sbjct: 1   MDIIATSSAQNLRRLWRRRAYQRLGSGNNMSTVTTRSSRSFRVGRMMIMRRRVSPKIRLK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDA 120
           ++SPLKV+A+ HDAYV+MM R+AN+VGNMYAIGGFGN KRIPK  NQV L   GGEQ+DA
Sbjct: 61  VSSPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDA 120

Query: 121 KLVLEMYNKLAASKN 130
           KLVLE+YNKLAASKN
Sbjct: 121 KLVLEIYNKLAASKN 132

BLAST of Cp4.1LG13g06860 vs. NCBI nr
Match: gi|659072948|ref|XP_008467181.1| (PREDICTED: uncharacterized protein LOC103504591 [Cucumis melo])

HSP 1 Score: 168.7 bits (426), Expect = 6.9e-39
Identity = 97/134 (72.39%), Postives = 110/134 (82.09%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSG---TGAPRS-RSFHLGRLWRMRRRA-PKLRLKM 60
           MDIIAT SA +L+RLWRRR YQRL SG   T   RS RSF +GR+  MRRRA PKLRLKM
Sbjct: 1   MDIIATSSAQNLRRLWRRRTYQRLRSGSNDTVPTRSLRSFRVGRMMIMRRRASPKLRLKM 60

Query: 61  ASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDAK 120
           +SPLKV+A+ HDAYV+MM R+AN+VGNMYAIGGFGN KRIPK  NQV L   GGEQ+DAK
Sbjct: 61  SSPLKVVAKIHDAYVEMMMRLANSVGNMYAIGGFGNRKRIPKPQNQVPL---GGEQIDAK 120

Query: 121 LVLEMYNKLAASKN 130
           LVLE+YNKLA+SKN
Sbjct: 121 LVLEIYNKLASSKN 131

BLAST of Cp4.1LG13g06860 vs. NCBI nr
Match: gi|255570673|ref|XP_002526291.1| (PREDICTED: uncharacterized protein LOC8275092 [Ricinus communis])

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-21
Identity = 63/136 (46.32%), Postives = 90/136 (66.18%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRS-RSFHLG-----RLWRMRRRAPKLRLK 60
           M++I++    +LKR WRRRRYQRL   T + R  +   LG     R+W++R  APKL+ K
Sbjct: 1   MEMISSACYDTLKRCWRRRRYQRLHCSTNSKRKLKIIRLGGAATRRIWKLRTTAPKLQWK 60

Query: 61  MASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGEQVDA 120
           + SP+++L  FHDAYV MM R+ANN+G +   G FG  K+  K   Q+S+V C GE+VD 
Sbjct: 61  LLSPVRILVNFHDAYVDMMIRLANNMGKLNGRGVFGR-KKFAK-DKQISMVSC-GEEVDT 120

Query: 121 KLVLEMYNKLAASKNL 131
           +LVLE+Y +L A++ L
Sbjct: 121 RLVLEIYKRLVAAREL 133

BLAST of Cp4.1LG13g06860 vs. NCBI nr
Match: gi|596294338|ref|XP_007226819.1| (hypothetical protein PRUPE_ppa017730mg [Prunus persica])

HSP 1 Score: 108.2 bits (269), Expect = 1.1e-20
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRSRSFHLG---------RLWRMRRRAPKL 60
           M+I+ T    +LKR WRRRRYQRL   T   + R   LG         R+W++R   PKL
Sbjct: 1   MEIVPTTHYDNLKRYWRRRRYQRLNGDT-KKKMRVTRLGGANGSKTTRRVWKLRSAIPKL 60

Query: 61  RL-KMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGE 120
           RL K  SP+K+LA+FHDAYV MM R+A N  ++    G  +GK++ K  +Q+S+  C GE
Sbjct: 61  RLMKFLSPIKLLAKFHDAYVDMMYRIAGNAASV----GRVSGKKVAKAQDQISIASC-GE 120

Query: 121 QVDAKLVLEMYNKLAASKNLTV 133
           +VD +LVLE+Y +LAAS+ L +
Sbjct: 121 EVDGRLVLEIYKRLAASRQLLI 136

BLAST of Cp4.1LG13g06860 vs. NCBI nr
Match: gi|645276452|ref|XP_008243296.1| (PREDICTED: uncharacterized protein LOC103341531 [Prunus mume])

HSP 1 Score: 107.1 bits (266), Expect = 2.5e-20
Identity = 64/142 (45.07%), Postives = 90/142 (63.38%), Query Frame = 1

Query: 1   MDIIATPSALSLKRLWRRRRYQRLGSGTGAPRSRSFHLG---------RLWRMRRRAPKL 60
           M+I+ T    +LKR WRRR+YQRL   T   + R   LG         R+W++R   PKL
Sbjct: 1   MEIVPTTHYDNLKRYWRRRKYQRLNGDT-KKKMRVTRLGGANGTKTTRRVWKLRSAIPKL 60

Query: 61  RL-KMASPLKVLARFHDAYVKMMTRVANNVGNMYAIGGFGNGKRIPKLGNQVSLVYCGGE 120
           RL K  SP+K+LA+FHDAYV MM R+A N  ++    G  +GK++ K  +Q+S+  C GE
Sbjct: 61  RLMKFLSPIKLLAKFHDAYVDMMYRIAGNAASV----GRVSGKKVAKAQDQISIASC-GE 120

Query: 121 QVDAKLVLEMYNKLAASKNLTV 133
           +VD +LVLE+Y +LAAS+ L +
Sbjct: 121 EVDGRLVLEIYKRLAASRQLLI 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KV01_CUCSA1.6e-3969.63Uncharacterized protein OS=Cucumis sativus GN=Csa_5G576730 PE=4 SV=1[more]
B9SJX2_RICCO2.0e-2146.32Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0577330 PE=4 SV=1[more]
M5Y1B9_PRUPE7.7e-2145.77Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017730mg PE=4 SV=1[more]
M5Y361_PRUPE2.9e-2050.39Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013192mg PE=4 SV=1[more]
B9HWC5_POPTR2.1e-1843.85Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s12920g PE=4 SV=2[more]
Match NameE-valueIdentityDescription
AT2G47485.11.6e-0637.88 unknown protein[more]
Match NameE-valueIdentityDescription
gi|778708618|ref|XP_011656247.1|2.4e-3969.63PREDICTED: uncharacterized protein LOC105435696 [Cucumis sativus][more]
gi|659072948|ref|XP_008467181.1|6.9e-3972.39PREDICTED: uncharacterized protein LOC103504591 [Cucumis melo][more]
gi|255570673|ref|XP_002526291.1|2.9e-2146.32PREDICTED: uncharacterized protein LOC8275092 [Ricinus communis][more]
gi|596294338|ref|XP_007226819.1|1.1e-2045.77hypothetical protein PRUPE_ppa017730mg [Prunus persica][more]
gi|645276452|ref|XP_008243296.1|2.5e-2045.07PREDICTED: uncharacterized protein LOC103341531 [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g06860.1Cp4.1LG13g06860.1mRNA


Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33702FAMILY NOT NAMEDcoord: 1..129
score: 3.0
NoneNo IPR availablePANTHERPTHR33702:SF2SUBFAMILY NOT NAMEDcoord: 1..129
score: 3.0

The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG13g06860Cp4.1LG01g18150Cucurbita pepo (Zucchini)cpecpeB201