Carg18052 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg18052
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Calcium-binding EF-hand family protein
Location	Cucurbita_argyrosperma_scaffold_095 : 115816 .. 116229 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTGTGGAGATGTTGGACAGTGCCACCATTGTCAACTTTGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

mRNA sequence

ATGAGTGTGGAGATGTTGGACAGTGCCACCATTGTCAACTTTGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

Coding sequence (CDS)

ATGAGTGTGGAGATGTTGGACAGTGCCACCATTGTCAACTTTGTCGAAGATGAGGCAGCCTTTGGTGCCTGCATAGGAGACCGGTTTGCTCACCTCGACACGAATCATGACGGTCTCCTTTCCTTTAGTGAGATGTTGAAGGAGTTGCAGAGCCTCAGGGTCATCGAGGCCGATTTTGGAATCGACGTGAAGCCTGATCCAGATGAGCTTTCTTCTGTCTATAGTTCTATGTTTTTGCAGTTTGATCGTAACTCGAGTGGAACGGTTGATCTGGATGAGTTTAAGGCTGAGAACAAAAGGATGATGCTAGCTATGGCTAATGGGATTGGAGCTTTACCTGTTCAAATGGTGCTAGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGAGAGAAGTTGCTATAATGACAACTTGA

Protein sequence

MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSFLMKAVEREVAIMTT

Homology

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BLAST of Carg18052 vs. NCBI nr
Match: XP_022930659.1 (uncharacterized protein LOC111437060 [Cucurbita moschata])

HSP 1 Score: 265.4 bits (677), Expect = 1.1e-67
Identity = 136/137 (99.27%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIMTT 138
           GSFLMKAVEREVAIMTT
Sbjct: 121 GSFLMKAVEREVAIMTT 137

[Close]

BLAST of Carg18052 vs. NCBI nr
Match: XP_023529816.1 (uncharacterized protein LOC111792530 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 264.2 bits (674), Expect = 2.4e-67
Identity = 135/137 (98.54%), Postives = 137/137 (100.00%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSYSEMLKELQSLRVIEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIMTT 138
           GSFLMKAVEREVAIMTT
Sbjct: 121 GSFLMKAVEREVAIMTT 137

[Close]

BLAST of Carg18052 vs. NCBI nr
Match: XP_022989004.1 (uncharacterized protein LOC111486198 [Cucurbita maxima])

HSP 1 Score: 260.0 bits (663), Expect = 4.5e-66
Identity = 134/137 (97.81%), Postives = 136/137 (99.27%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDEAAFGA IGDRFAHLDTNHDGLLS+SEMLKELQSLRVIEADFG
Sbjct: 1   MSVEILDSATIVNFVEDEAAFGAFIGDRFAHLDTNHDGLLSYSEMLKELQSLRVIEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIMTT 138
           GSFLMKAVEREVAIMTT
Sbjct: 121 GSFLMKAVEREVAIMTT 137

[Close]

BLAST of Carg18052 vs. NCBI nr
Match: XP_011657544.1 (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hypothetical protein Csa_6G418660 [Cucumis sativus])

HSP 1 Score: 223.8 bits (569), Expect = 3.6e-55
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

[Close]

BLAST of Carg18052 vs. NCBI nr
Match: XP_008449396.1 (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 222.2 bits (565), Expect = 1.0e-54
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTNHDGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDP+ELSSVYSS+FLQFD +SSGTVDLDEFKAE KRMML MANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

[Close]

BLAST of Carg18052 vs. TAIR10
Match: AT2G44310.1 (Calcium-binding EF-hand family protein)

HSP 1 Score: 125.6 bits (314), Expect = 2.4e-29
Identity = 60/135 (44.44%), Postives = 99/135 (73.33%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           M V ++D +T+ +FV+DE  F   + +RFA LD N DG+LS SE+ K  +S+R++E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVL-- 120
           +DV    DEL+++Y S+F +FD + SG+VDL+EF++E K+++LA+A+G+G+ P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSFLMKAVEREVA 134
           ++ +FL KA + E +
Sbjct: 121 DDDNFLKKAADLEAS 135

[Close]

BLAST of Carg18052 vs. TAIR10
Match: AT1G54530.1 (Calcium-binding EF hand family protein)

HSP 1 Score: 58.9 bits (141), Expect = 2.8e-09
Identity = 40/127 (31.50%), Postives = 69/127 (54.33%), Query Frame = 0


Query: 5   MLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDVK 64
           ++ S T++ F+ D  +F +   D F  LD + +G+LS SE+ + L ++  +E+    +V 
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVES----EVA 64

Query: 65  PDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSFL 124
           P  DE  +VY+++F +F  +    +    F+     ++ AMA GIG  PV MV+     +
Sbjct: 65  PG-DETDNVYNAIFERFGED----LVPKNFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 122

Query: 125 MKAVERE 132
           MKAV  E
Sbjct: 125 MKAVLHE 122

[Close]

BLAST of Carg18052 vs. TAIR10
Match: AT4G38810.2 (Calcium-binding EF-hand family protein)

HSP 1 Score: 54.3 bits (129), Expect = 6.9e-08
Identity = 35/125 (28.00%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 4   EMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFGIDV 63
           ++LD + IV  VE+E  F   +  +F  LD + DG LS +E+   +     I A  G+  
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTELQPAVAD---IGAALGLPA 72

Query: 64  KPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEEGSF 123
           +    +   +YS +  +F   S   V   EFK     ++L MA G+   P+ ++  +G  
Sbjct: 73  QGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPIVILRMDGED 132

Query: 124 LMKAV 129
           L + V
Sbjct: 133 LSEFV 134

[Close]

BLAST of Carg18052 vs. TrEMBL
Match: tr|A0A0A0KHT7|A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 2.4e-55
Identity = 114/134 (85.07%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTN DGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDPDELSSVYSS+FLQFDR+SSGTVDLDEF+AE KRMMLAMANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

[Close]

BLAST of Carg18052 vs. TrEMBL
Match: tr|A0A1S3BLY5|A0A1S3BLY5_CUCME (uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 6.9e-55
Identity = 113/134 (84.33%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVED+ AFGA I DRFAHLDTNHDGLLS+SEML+EL +LRV E  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVKPDP+ELSSVYSS+FLQFD +SSGTVDLDEFKAE KRMML MANG+G LPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAI 135
           GSFLMKAVERE AI
Sbjct: 121 GSFLMKAVERETAI 134

[Close]

BLAST of Carg18052 vs. TrEMBL
Match: tr|A0A1S3C175|A0A1S3C175_CUCME (uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 8.5e-53
Identity = 112/135 (82.96%), Postives = 119/135 (88.15%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDS TIVNFVEDEAAF A I DRF HLDTNHDGLLS++EML+ELQSLRV EADFG
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
            D K DPDELSSVYSS+FLQFDR+S G VDLD +K E KRMMLAMANGIG LPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE AIM
Sbjct: 121 GSFLMKAVERETAIM 135

[Close]

BLAST of Carg18052 vs. TrEMBL
Match: tr|A0A0A0K3B2|A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.1e-49
Identity = 107/135 (79.26%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LD  TIVNFVEDEAAF A I  +FAHLDT+HDGLLS++EML+ELQSLRV +ADFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
            D K  PDELSSVYSS+FLQFDR+S G VDLD +K E KRMMLAMANGIG LPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVEREVAIM 136
           GSFLMKAVERE AIM
Sbjct: 121 GSFLMKAVERETAIM 135

[Close]

BLAST of Carg18052 vs. TrEMBL
Match: tr|A0A061DTS7|A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao OX=3641 GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 2.2e-48
Identity = 101/131 (77.10%), Postives = 116/131 (88.55%), Query Frame = 0


Query: 1   MSVEMLDSATIVNFVEDEAAFGACIGDRFAHLDTNHDGLLSFSEMLKELQSLRVIEADFG 60
           MSVE+LDSATIVNFVEDE AF   I DRFAHLDT+HDGLLS++E+LKELQSLRV E  FG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDVKPDPDELSSVYSSMFLQFDRNSSGTVDLDEFKAENKRMMLAMANGIGALPVQMVLEE 120
           IDVK DP EL+ VY+S+F+QFD +S+GTVDL EFKAE+KRMMLAMANG+G LPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERE 132
           GSFL KAV+RE
Sbjct: 121 GSFLKKAVDRE 131

The following BLAST results are available for this feature:

BLAST of Carg18052 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930659.1	1.1e-67	99.27	uncharacterized protein LOC111437060 [Cucurbita moschata]	[more]
XP_023529816.1	2.4e-67	98.54	uncharacterized protein LOC111792530 [Cucurbita pepo subsp. pepo]	[more]
XP_022989004.1	4.5e-66	97.81	uncharacterized protein LOC111486198 [Cucurbita maxima]	[more]
XP_011657544.1	3.6e-55	85.07	PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus] >KGN47942.1 hy...	[more]
XP_008449396.1	1.0e-54	84.33	PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo]	[more]

BLAST of Carg18052 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44310.1	2.4e-29	44.44	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	2.8e-09	31.50	Calcium-binding EF hand family protein	[more]
AT4G38810.2	6.9e-08	28.00	Calcium-binding EF-hand family protein	[more]

BLAST of Carg18052 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg18052 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KHT7\|A0A0A0KHT7_CUCSA	2.4e-55	85.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G418660 PE=4 SV=1	[more]
tr\|A0A1S3BLY5\|A0A1S3BLY5_CUCME	6.9e-55	84.33	uncharacterized protein LOC103491294 OS=Cucumis melo OX=3656 GN=LOC103491294 PE=...	[more]
tr\|A0A1S3C175\|A0A1S3C175_CUCME	8.5e-53	82.96	uncharacterized protein LOC103495653 OS=Cucumis melo OX=3656 GN=LOC103495653 PE=...	[more]
tr\|A0A0A0K3B2\|A0A0A0K3B2_CUCSA	1.1e-49	79.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G037625 PE=4 SV=1	[more]
tr\|A0A061DTS7\|A0A061DTS7_THECC	2.2e-48	77.10	Calcium-binding EF-hand family protein OS=Theobroma cacao OX=3641 GN=TCM_002258 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS
IPR002048	EF_hand_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg18052-RA	Carg18052-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 e-value: 1.4 score: 16.7 coord: 73..101 e-value: 4.1 score: 12.8
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 26..95 e-value: 3.3E-9 score: 37.0
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 69..104 score: 9.52
IPR002048	EF-hand domain	PROSITE	PS50222	EF_HAND_2	coord: 20..55 score: 7.986
None	No IPR available	GENE3D	G3DSA:1.10.238.10		coord: 23..103 e-value: 1.6E-11 score: 46.2
None	No IPR available	PANTHER	PTHR44089	FAMILY NOT NAMED	coord: 1..135
None	No IPR available	PANTHER	PTHR44089:SF4	SUBFAMILY NOT NAMED	coord: 1..135
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 33..45
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94
IPR011992	EF-hand domain pair	SUPERFAMILY	SSF47473	EF-hand	coord: 27..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg18052	Cla015648	Watermelon (97103) v1	carwmB1066
Carg18052	Csa7G037620	Cucumber (Chinese Long) v2	carcuB1081
Carg18052	MELO3C018876	Melon (DHL92) v3.5.1	carmeB1033
Carg18052	ClCG02G002430	Watermelon (Charleston Gray)	carwcgB1037
Carg18052	CSPI07G03090	Wild cucumber (PI 183967)	carcpiB1103
Carg18052	Cucsa.181060	Cucumber (Gy14) v1	carcgyB1185
Carg18052	CmaCh19G008860	Cucurbita maxima (Rimu)	carcmaB1474
Carg18052	CmaCh11G017880	Cucurbita maxima (Rimu)	carcmaB1472
Carg18052	CmaCh11G012640	Cucurbita maxima (Rimu)	carcmaB1471
Carg18052	CmoCh11G018590	Cucurbita moschata (Rifu)	carcmoB1428
Carg18052	CmoCh19G009000	Cucurbita moschata (Rifu)	carcmoB1430
Carg18052	Lsi11G013850	Bottle gourd (USVL1VR-Ls)	carlsiB974
Carg18052	Cp4.1LG15g07200	Cucurbita pepo (Zucchini)	carcpeB1481
Carg18052	Cp4.1LG04g03830	Cucurbita pepo (Zucchini)	carcpeB1483
Carg18052	CsGy7G002760	Cucumber (Gy14) v2	carcgybB1049
Carg18052	MELO3C018876.2	Melon (DHL92) v3.6.1	carmedB1047
Carg18052	CsaV3_7G002970	Cucumber (Chinese Long) v3	carcucB1114
Carg18052	Cla97C02G028880	Watermelon (97103) v2	carwmbB1124
Carg18052	Bhi05G001245	Wax gourd	carwgoB1253

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg18052	Carg04170	Silver-seed gourd	carcarB242

The following block(s) are covering this gene:


Gene	Organism	Block
Carg18052	Cucurbita moschata (Rifu)	carcmoB1431
Carg18052	Cucurbita pepo (Zucchini)	carcpeB1482
Carg18052	Bottle gourd (USVL1VR-Ls)	carlsiB972