Cp4.1LG04g03830 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG04g03830
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCalcium-binding EF-hand family protein
LocationCp4.1LG04 : 6897840 .. 6898187 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCGTAGAATTGCTAGACAGCGCCACCGTAGTGAGCTTCGTGGAGGACGAGGAAGCCTTCGGCGCCGCCATTAGGGAGCGTTTCAGGCACCTTGACGTCGACGGCGATGGCGCGCTGTCGTACACAGAGATGTTGAAGGAGTTTGGAAGCGATGAGGTTTGTTGTGCGTACGAAACGGAGTCGAATGGAAAAGTTGATTTGGAGAAGTTCATGAGGGGAATGAAGAAGATGATGATGGCCATTGCTGAGGGATTAGGGTTCTTGCCGATTCATATGGCGCTGCAAAAAGATGGGTTGTTGATGAAAGCTGTTCAGAGAGAAGCCGCCGCCATGGTAGATGCTTGA

mRNA sequence

ATGAGCGTAGAATTGCTAGACAGCGCCACCGTAGTGAGCTTCGTGGAGGACGAGGAAGCCTTCGGCGCCGCCATTAGGGAGCGTTTCAGGCACCTTGACGTCGACGGCGATGGCGCGCTGTCGTACACAGAGATGTTGAAGGAGTTTGGAAGCGATGAGGTTTGTTGTGCGTACGAAACGGAGTCGAATGGAAAAGTTGATTTGGAGAAGTTCATGAGGGGAATGAAGAAGATGATGATGGCCATTGCTGAGGGATTAGGGTTCTTGCCGATTCATATGGCGCTGCAAAAAGATGGGTTGTTGATGAAAGCTGTTCAGAGAGAAGCCGCCGCCATGGTAGATGCTTGA

Coding sequence (CDS)

ATGAGCGTAGAATTGCTAGACAGCGCCACCGTAGTGAGCTTCGTGGAGGACGAGGAAGCCTTCGGCGCCGCCATTAGGGAGCGTTTCAGGCACCTTGACGTCGACGGCGATGGCGCGCTGTCGTACACAGAGATGTTGAAGGAGTTTGGAAGCGATGAGGTTTGTTGTGCGTACGAAACGGAGTCGAATGGAAAAGTTGATTTGGAGAAGTTCATGAGGGGAATGAAGAAGATGATGATGGCCATTGCTGAGGGATTAGGGTTCTTGCCGATTCATATGGCGCTGCAAAAAGATGGGTTGTTGATGAAAGCTGTTCAGAGAGAAGCCGCCGCCATGGTAGATGCTTGA

Protein sequence

MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKEFGSDEVCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQKDGLLMKAVQREAAAMVDA
Homology
[Close]
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 4.4e-25
Identity = 69/138 (50.00%), Postives = 88/138 (63.77%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LDSAT+VSFVEDEEAF  +IR RF HLD D DG LSY EM++E          FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 116
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match: V4W4I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 2.2e-24
Identity = 68/138 (49.28%), Postives = 86/138 (62.32%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LD AT+VSFVEDEEAF  +IR RF HLD D DG LSY EM++E          FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 116
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKEETKQMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match: F6HIA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00370 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 2.9e-24
Identity = 68/135 (50.37%), Postives = 86/135 (63.70%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKEFGS--------- 60
           MSVE+LD AT+VSFVEDEEAF   I +RF +LD + DG LSY EMLKEF S         
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  -------DEVCCAYET-------ESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 113
                  DE+   Y++       ++NG VDLE+F +  K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match: F6HI98_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00350 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 3.8e-24
Identity = 67/135 (49.63%), Postives = 87/135 (64.44%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKEFGS--------- 60
           MSVE+LD AT+VSFVEDEEAF   I +RF +LD + DG LS+TEMLKEF S         
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSFTEMLKEFQSLRVFETHFG 60

Query: 61  -------DEVCCAYET-------ESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 113
                  DE+   Y++       ++NG VDLE+F +  K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFKKETKRMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match: V4TKF4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017119mg PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 4.9e-24
Identity = 66/136 (48.53%), Postives = 86/136 (63.24%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LD AT+VSFVEDE AF   IRERF HLD D DG LS++EM+KE          FG
Sbjct: 1   MSVEVLDGATIVSFVEDEYAFNILIRERFAHLDTDNDGLLSHSEMMKELKCLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 114
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPDELARVYSSLFVQFDHDSNGTVDLEEFKAETKQMMLAVANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-16
Identity = 54/140 (38.57%), Postives = 75/140 (53.57%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKEFGS--------- 60
           M V L+D +TV SFV+DEE F  ++ ERF  LD++ DG LS +E+ K F S         
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  --------------DEVCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMAL-- 116
                         D +   ++T+ +G VDLE+F   MKK+++AIA+GLG  PI M L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

[Close]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match: gi|659110966|ref|XP_008455505.1| (PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 6.2e-28
Identity = 75/132 (56.82%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKEF----------- 60
           MSVELLD AT+V+FVEDEEAF    RE F  LD D DG LSY EMLKEF           
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60

Query: 61  -----GSDEVCCAY-------ETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 110
                 +DE+   Y       + +S+GKVD+++FM GMK MM+AIAEG+GFLPI MAL+K
Sbjct: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

[Close]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match: gi|449453730|ref|XP_004144609.1| (PREDICTED: uncharacterized protein LOC101208968 [Cucumis sativus])

HSP 1 Score: 131.7 bits (330), Expect = 8.1e-28
Identity = 75/132 (56.82%), Postives = 88/132 (66.67%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVELLD AT+V+FVEDEEAF    RE F  LD D DG LSY EMLKE          FG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKELHALRVSEADFG 60

Query: 61  SD-------------EVCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 110
           +D              V   ++ +S+GKVD+++FM GMK MM+AIAEG+GFLPI MAL+K
Sbjct: 61  TDVKPDADELSQLYSAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

[Close]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match: gi|567910763|ref|XP_006447695.1| (hypothetical protein CICLE_v10018069mg [Citrus clementina])

HSP 1 Score: 122.1 bits (305), Expect = 6.4e-25
Identity = 69/138 (50.00%), Postives = 88/138 (63.77%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LDSAT+VSFVEDEEAF  +IR RF HLD D DG LSY EM++E          FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 116
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match: gi|568830567|ref|XP_006469565.1| (PREDICTED: uncharacterized protein LOC102626363 isoform X1 [Citrus sinensis])

HSP 1 Score: 120.9 bits (302), Expect = 1.4e-24
Identity = 69/138 (50.00%), Postives = 87/138 (63.04%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LDSAT+VSFVEDEEAF  +IR RF HLD D DG LSY EM++E          FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 116
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

[Close]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match: gi|568830561|ref|XP_006469562.1| (PREDICTED: uncharacterized protein LOC102625501 [Citrus sinensis])

HSP 1 Score: 120.6 bits (301), Expect = 1.9e-24
Identity = 67/136 (49.26%), Postives = 87/136 (63.97%), Query Frame = 1 

Query: 1   MSVELLDSATVVSFVEDEEAFGAAIRERFRHLDVDGDGALSYTEMLKE----------FG 60
           MSVE+LDSAT+VSFVEDEEAF  +IR RF HLD D DG LSY EM++E          FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  SDE-------------VCCAYETESNGKVDLEKFMRGMKKMMMAIAEGLGFLPIHMALQK 114
            DE             +   ++ +SNG VDLE+F    K+MM+A+A GLGFLP+ M L++
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAVANGLGFLPVQMVLEE 120

The following BLAST results are available for this feature:
BLAST of Cp4.1LG04g03830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG04g03830 vs. TrEMBL
Match NameE-valueIdentityDescription
V4U9W3_9ROSI4.4e-2550.00Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1[more]
V4W4I0_9ROSI2.2e-2449.28Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1[more]
F6HIA0_VITVI2.9e-2450.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00370 PE=4 SV=... [more]
F6HI98_VITVI3.8e-2449.63Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00350 PE=4 SV=... [more]
V4TKF4_9ROSI4.9e-2448.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017119mg PE=4 SV=1[more]
BLAST of Cp4.1LG04g03830 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44310.11.5e-1638.57 Calcium-binding EF-hand family protein[more]
BLAST of Cp4.1LG04g03830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110966|ref|XP_008455505.1|6.2e-2856.82PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo][more]
gi|449453730|ref|XP_004144609.1|8.1e-2856.82PREDICTED: uncharacterized protein LOC101208968 [Cucumis sativus][more]
gi|567910763|ref|XP_006447695.1|6.4e-2550.00hypothetical protein CICLE_v10018069mg [Citrus clementina][more]
gi|568830567|ref|XP_006469565.1|1.4e-2450.00PREDICTED: uncharacterized protein LOC102626363 isoform X1 [Citrus sinensis][more]
gi|568830561|ref|XP_006469562.1|1.9e-2449.26PREDICTED: uncharacterized protein LOC102625501 [Citrus sinensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG04g03830.1Cp4.1LG04g03830.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 63..81
score: 5.726coord: 20..55
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 15..78
score: 6.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 18..87
score: 5.1
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..114
score: 2.4
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..114
score: 2.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG04g03830Cucsa.181060Cucumber (Gy14) v1cgycpeB0498
Cp4.1LG04g03830CmaCh11G012640Cucurbita maxima (Rimu)cmacpeB154
Cp4.1LG04g03830CmoCh11G018590Cucurbita moschata (Rifu)cmocpeB126
Cp4.1LG04g03830Cla015650Watermelon (97103) v1cpewmB675
Cp4.1LG04g03830MELO3C018879Melon (DHL92) v3.5.1cpemeB609
Cp4.1LG04g03830ClCG02G002450Watermelon (Charleston Gray)cpewcgB596
Cp4.1LG04g03830CSPI07G03090Wild cucumber (PI 183967)cpecpiB692
Cp4.1LG04g03830Lsi11G013850Bottle gourd (USVL1VR-Ls)cpelsiB526
Cp4.1LG04g03830MELO3C018876.2Melon (DHL92) v3.6.1cpemedB721
Cp4.1LG04g03830CsaV3_7G002970Cucumber (Chinese Long) v3cpecucB0863
Cp4.1LG04g03830Bhi05G001245Wax gourdcpewgoB0852
Cp4.1LG04g03830CsGy7G002760Cucumber (Gy14) v2cgybcpeB964
Cp4.1LG04g03830Carg18052Silver-seed gourdcarcpeB1483
Cp4.1LG04g03830Carg04170Silver-seed gourdcarcpeB0288
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG04g03830Cucumber (Chinese Long) v3cpecucB0828
Cp4.1LG04g03830Cucumber (Chinese Long) v3cpecucB0855
Cp4.1LG04g03830Wax gourdcpewgoB0862
Cp4.1LG04g03830Cucurbita pepo (Zucchini)cpecpeB267
Cp4.1LG04g03830Cucurbita pepo (Zucchini)cpecpeB304
Cp4.1LG04g03830Cucumber (Gy14) v1cgycpeB0395
Cp4.1LG04g03830Cucurbita maxima (Rimu)cmacpeB537
Cp4.1LG04g03830Cucurbita moschata (Rifu)cmocpeB492
Cp4.1LG04g03830Cucurbita moschata (Rifu)cmocpeB525
Cp4.1LG04g03830Wild cucumber (PI 183967)cpecpiB666
Cp4.1LG04g03830Cucumber (Chinese Long) v2cpecuB663
Cp4.1LG04g03830Cucumber (Chinese Long) v2cpecuB690
Cp4.1LG04g03830Bottle gourd (USVL1VR-Ls)cpelsiB520
Cp4.1LG04g03830Cucumber (Gy14) v2cgybcpeB235
Cp4.1LG04g03830Melon (DHL92) v3.6.1cpemedB773