MELO3C018879 (gene) Melon (DHL92) v3.5.1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	MELO3C018879
Type	gene
Organism	Cucumis melo (Melon (DHL92) v3.5.1)
Description	Putative calcium-binding protein
Location	chr1 : 3614333 .. 3614746 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTTCTCTCCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

mRNA sequence

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTTCTCTCCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

Coding sequence (CDS)

ATGAGCGTAGAATTACTTGACGGCGCCACCATAGTCAACTTCGTGGAAGACGAAGAAGCTTTCAATGGTTGGACTAGAGAGCATTTCACCCGTCTTGACACTGACCGCGACGGCTTTCTCTCCTACGCCGAGATGCTGAAGGAGTTTTATACTTTGAGAGTCTCCGAAGCTGACTTTGGAACCGATGTGAAACTTGATGCCGATGAGCTCTCTCAACTCTACGGCGCCGTCTTCAAGCAGTTCGATCGGGATTCAGATGGAAAAGTTGATGTCGATGAGTTCATGATGGGGATGAAGAATATGATGTTGGCTATTGCTGAGGGAATGGGATTCTTGCCTATTCAAATGGCTTTGGAAAAAGATGGGTTCTTGATGAAAGCTGTTCAAAGAGAAGCCACCAAAGCCTTTTCTTGA

Protein sequence

MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFGTDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEKDGFLMKAVQREATKAFS*

Homology

[Close]

BLAST of MELO3C018879 vs. TrEMBL
Match: F6HIA0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00370 PE=4 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 2.4e-41
Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAVQREA K
Sbjct: 121 DSFLKKAVQREAIK 134

[Close]

BLAST of MELO3C018879 vs. TrEMBL
Match: F6HI95_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00310 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFKKETKRMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

[Close]

BLAST of MELO3C018879 vs. TrEMBL
Match: A5ARH6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00420 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

[Close]

BLAST of MELO3C018879 vs. TrEMBL
Match: F6HIA4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00430 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 5.3e-41
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFKKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

[Close]

BLAST of MELO3C018879 vs. TrEMBL
Match: F6HIA2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00400 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 85/134 (63.43%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDG+TIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGSTIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFKKETKRMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

[Close]

BLAST of MELO3C018879 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 63/136 (46.32%), Postives = 87/136 (63.97%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           M V L+DG+T+ +FV+DEE F     E F  LD ++DG LS +E+ K F ++R+ E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMAL-- 120
            DV    DEL+ LY ++F++FD D  G VD++EF   MK ++LAIA+G+G  PI M L  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EKDGFLMKAVQREATK 135
           + D FL KA   EA+K
Sbjct: 121 DDDNFLKKAADLEASK 136

[Close]

BLAST of MELO3C018879 vs. TAIR10
Match: AT1G54530.1 (AT1G54530.1 Calcium-binding EF hand family protein)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-10
Identity = 36/128 (28.12%), Postives = 65/128 (50.78%), Query Frame = 1


Query: 5   LLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFGTDVK 64
           ++   T++ F+ D ++F   T ++F  LD D++G LS +E+ +    +   E++      
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAP--- 64

Query: 65  LDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEKDGFL 124
              DE   +Y A+F++F  D   K     F   +  ++ A+A G+G  P+ M +  DG +
Sbjct: 65  --GDETDNVYNAIFERFGEDLVPK----NFRDLIAEILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 MKAVQREA 133
           MKAV  E+
Sbjct: 125 MKAVLHES 123

[Close]

BLAST of MELO3C018879 vs. TAIR10
Match: AT4G38810.2 (AT4G38810.2 Calcium-binding EF-hand family protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.7e-09
Identity = 41/123 (33.33%), Postives = 60/123 (48.78%), Query Frame = 1


Query: 4   ELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFGTDV 63
           ++LDG+ IV  VE+E+ F+ +  + F +LD D DG LS  E       L+ + AD G  +
Sbjct: 13  QVLDGSDIVELVENEKVFDKFVEQKFQQLDQDEDGKLSVTE-------LQPAVADIGAAL 72

Query: 64  KLDADELS----QLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALE 123
            L A   S     +Y  V  +F   S  KV   EF   + +++L +A G+   PI + L 
Sbjct: 73  GLPAQGTSPDSDHIYSEVLNEFTHGSQEKVSKTEFKEVLSDILLGMAAGLKRDPI-VILR 127

[Close]

BLAST of MELO3C018879 vs. NCBI nr
Match: gi|659110966|ref|XP_008455505.1| (PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo])

HSP 1 Score: 273.9 bits (699), Expect = 1.6e-70
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of MELO3C018879 vs. NCBI nr
Match: gi|449453730|ref|XP_004144609.1| (PREDICTED: uncharacterized protein LOC101208968 [Cucumis sativus])

HSP 1 Score: 262.7 bits (670), Expect = 3.6e-67
Identity = 132/137 (96.35%), Postives = 133/137 (97.08%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKE + LRVSEADFG
Sbjct: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKELHALRVSEADFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
           TDVK DADELSQLY AVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK
Sbjct: 61  TDVKPDADELSQLYSAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120

Query: 121 DGFLMKAVQREATKAFS 138
           DGFLMKAVQREATKAFS
Sbjct: 121 DGFLMKAVQREATKAFS 137

[Close]

BLAST of MELO3C018879 vs. NCBI nr
Match: gi|359485596|ref|XP_002264788.2| (PREDICTED: uncharacterized protein LOC100243037 [Vitis vinifera])

HSP 1 Score: 176.4 bits (446), Expect = 3.4e-41
Identity = 87/134 (64.93%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAVQREA K
Sbjct: 121 DSFLKKAVQREAIK 134

[Close]

BLAST of MELO3C018879 vs. NCBI nr
Match: gi|225446969|ref|XP_002265035.1| (PREDICTED: uncharacterized protein LOC100260129 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 7.6e-41
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFRKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

[Close]

BLAST of MELO3C018879 vs. NCBI nr
Match: gi|225446973|ref|XP_002265155.1| (PREDICTED: uncharacterized protein LOC100255025 [Vitis vinifera])

HSP 1 Score: 175.3 bits (443), Expect = 7.6e-41
Identity = 86/134 (64.18%), Postives = 106/134 (79.10%), Query Frame = 1


Query: 1   MSVELLDGATIVNFVEDEEAFNGWTREHFTRLDTDRDGFLSYAEMLKEFYTLRVSEADFG 60
           MSVE+LDGATIV+FVEDEEAFNG   + F+ LDT+ DGFLSYAEMLKEF +LRV E  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNGLIHDRFSNLDTNHDGFLSYAEMLKEFQSLRVFETHFG 60

Query: 61  TDVKLDADELSQLYGAVFKQFDRDSDGKVDVDEFMMGMKNMMLAIAEGMGFLPIQMALEK 120
            DVK D DEL+ +Y ++F +FD D++G VD++EF    K MMLA+A G+GFLP+QM LE+
Sbjct: 61  IDVKRDPDELAHVYDSLFVKFDHDANGAVDLEEFKKETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 DGFLMKAVQREATK 135
           D FL KAV+REA K
Sbjct: 121 DSFLKKAVEREAMK 134

The following BLAST results are available for this feature:

BLAST of MELO3C018879 vs. TrEMBL


Match Name	E-value	Identity	Description
F6HIA0_VITVI	2.4e-41	64.93	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00370 PE=4 SV=...	[more]
F6HI95_VITVI	5.3e-41	64.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00310 PE=4 SV=...	[more]
A5ARH6_VITVI	5.3e-41	64.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00420 PE=4 SV=...	[more]
F6HIA4_VITVI	5.3e-41	64.18	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00430 PE=4 SV=...	[more]
F6HIA2_VITVI	1.2e-40	63.43	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0059g00400 PE=4 SV=...	[more]

BLAST of MELO3C018879 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G44310.1	2.1e-28	46.32	Calcium-binding EF-hand family protein	[more]
AT1G54530.1	2.5e-10	28.13	Calcium-binding EF hand family protein	[more]
AT4G38810.2	3.7e-09	33.33	Calcium-binding EF-hand family protein	[more]

BLAST of MELO3C018879 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659110966\|ref\|XP_008455505.1\|	1.6e-70	100.00	PREDICTED: uncharacterized protein LOC103495656 [Cucumis melo]	[more]
gi\|449453730\|ref\|XP_004144609.1\|	3.6e-67	96.35	PREDICTED: uncharacterized protein LOC101208968 [Cucumis sativus]	[more]
gi\|359485596\|ref\|XP_002264788.2\|	3.4e-41	64.93	PREDICTED: uncharacterized protein LOC100243037 [Vitis vinifera]	[more]
gi\|225446969\|ref\|XP_002265035.1\|	7.6e-41	64.18	PREDICTED: uncharacterized protein LOC100260129 [Vitis vinifera]	[more]
gi\|225446973\|ref\|XP_002265155.1\|	7.6e-41	64.18	PREDICTED: uncharacterized protein LOC100255025 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002048	EF_hand_dom
IPR011992	EF-hand-dom_pair
IPR018247	EF_Hand_1_Ca_BS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005509	calcium ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005509	calcium ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C018879T1	MELO3C018879T1	mRNA

InterPro

Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002048	EF-hand domain	PFAM	PF13499	EF-hand_7	coord: 26..95 score: 2.2
IPR002048	EF-hand domain	SMART	SM00054	efh_1	coord: 24..52 score: 4.5coord: 73..101 score: 8.
IPR002048	EF-hand domain	PROFILE	PS50222	EF_HAND_2	coord: 26..55 score: 7.763coord: 69..104 score: 13
IPR011992	EF-hand domain pair	GENE3D	G3DSA:1.10.238.10		coord: 26..100 score: 5.9
IPR011992	EF-hand domain pair	unknown	SSF47473	EF-hand	coord: 26..100 score: 3.23
IPR018247	EF-Hand 1, calcium-binding site	PROSITE	PS00018	EF_HAND_1	coord: 82..94 score: -coord: 33..45 scor
None	No IPR available	PANTHER	PTHR10891	EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN	coord: 1..131 score: 2.4
None	No IPR available	PANTHER	PTHR10891:SF615	SUBFAMILY NOT NAMED	coord: 1..131 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
MELO3C018879	Cp4.1LG04g03830	Cucurbita pepo (Zucchini)	cpemeB609

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
MELO3C018879	Cucumber (Gy14) v2	cgybmeB089
MELO3C018879	Cucumber (Gy14) v2	cgybmeB467
MELO3C018879	Cucumber (Gy14) v2	cgybmeB468
MELO3C018879	Silver-seed gourd	carmeB0199
MELO3C018879	Silver-seed gourd	carmeB1033
MELO3C018879	Cucumber (Chinese Long) v3	cucmeB107
MELO3C018879	Cucumber (Chinese Long) v3	cucmeB547
MELO3C018879	Cucumber (Chinese Long) v3	cucmeB548
MELO3C018879	Watermelon (97103) v2	mewmbB178
MELO3C018879	Wax gourd	mewgoB212
MELO3C018879	Wax gourd	mewgoB235
MELO3C018879	Cucumber (Gy14) v1	cgymeB327
MELO3C018879	Cucurbita maxima (Rimu)	cmameB461
MELO3C018879	Cucurbita moschata (Rifu)	cmomeB090
MELO3C018879	Cucurbita moschata (Rifu)	cmomeB452
MELO3C018879	Wild cucumber (PI 183967)	cpimeB535
MELO3C018879	Wild cucumber (PI 183967)	cpimeB103
MELO3C018879	Wild cucumber (PI 183967)	cpimeB538
MELO3C018879	Cucumber (Chinese Long) v2	cumeB103
MELO3C018879	Cucumber (Chinese Long) v2	cumeB530
MELO3C018879	Watermelon (Charleston Gray)	mewcgB195
MELO3C018879	Watermelon (97103) v1	mewmB241
MELO3C018879	Cucurbita pepo (Zucchini)	cpemeB223
MELO3C018879	Cucurbita pepo (Zucchini)	cpemeB273
MELO3C018879	Bottle gourd (USVL1VR-Ls)	lsimeB067
MELO3C018879	Bottle gourd (USVL1VR-Ls)	lsimeB095