Cp4.1LG15g07200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCalcium-binding EF-hand family protein
LocationCp4.1LG15 : 7567508 .. 7567792 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

mRNA sequence

ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Coding sequence (CDS)

ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Protein sequence

MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA
Homology
[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: A0A0A0K1Y0_CUCSA (Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-39
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+D KPDP ELSSVY SLF QFDRDCNGKVDLGEFM ET+KMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-30
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           +LKELQSLRV ETHFG+DVK DP+EL+ VY SLF QFD D NG VDLGEF AE+++MMLA
Sbjct: 45  LLKELQSLRVFETHFGIDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MANG+G  PV+M+LEE S LKKAVDRESTKLA
Sbjct: 105 MANGMGFLPVQMLLEEGSFLKKAVDRESTKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: M5WSX9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013087mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.4e-30
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIARVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+S LKKAV+REST++
Sbjct: 105 MANGMGFLPVQMVLEEDSFLKKAVERESTQI 135

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: V7B090_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G012000g PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+DV+PDP+EL+ VY SLF QFD + NG +DL EF  ETRKMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDVEPDPDELAHVYESLFVQFDHNLNGTIDLEEFEKETRKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MA+G+G  PV+MVLEE+S+LK AV+RES KLA
Sbjct: 105 MADGLGFLPVQMVLEEDSILKTAVERESNKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: I1N566_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290400 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+DV+PDP+EL+ VY SLF QFD + NG +DL EF  ET++MMLA
Sbjct: 45  MLKELQSLRVLETHFGIDVEPDPDELARVYESLFVQFDHNLNGTIDLDEFKKETKQMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MA+G+G  PV+MVLEE+S+LKKAV+RES K+A
Sbjct: 105 MADGLGFLPVQMVLEEDSILKKAVERESNKVA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-19
Identity = 45/94 (47.87%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 3   KELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMA 62
           K  +S+R+LE+HFGVDV    +EL+++Y S+F +FD D +G VDL EF +E +K++LA+A
Sbjct: 47  KAFESMRLLESHFGVDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIA 106

Query: 63  NGIGLSPVRMVL--EENSLLKKAVDRESTKLAVA 95
           +G+G  P+ MVL  ++++ LKKA D E++KL  A
Sbjct: 107 DGLGSCPITMVLDDDDDNFLKKAADLEASKLEKA 140

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|659110964|ref|XP_008455503.1| (PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 3.7e-39
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETHFG+D KPDP ELSSVYASLF QFDRDCNGKVDLGEFMAET+KMMLA
Sbjct: 45  MLKELQSLRVFETHFGIDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|449453565|ref|XP_004144527.1| (PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+D KPDP ELSSVY SLF QFDRDCNGKVDLGEFM ET+KMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|590711914|ref|XP_007049241.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           +LKELQSLRV ETHFG+DVK DP+EL+ VY SLF QFD D NG VDLGEF AE+++MMLA
Sbjct: 45  LLKELQSLRVFETHFGIDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MANG+G  PV+M+LEE S LKKAVDRESTKLA
Sbjct: 105 MANGMGFLPVQMLLEEGSFLKKAVDRESTKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|645247440|ref|XP_008229837.1| (PREDICTED: uncharacterized protein LOC103329186 [Prunus mume])

HSP 1 Score: 137.9 bits (346), Expect = 9.2e-30
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIAHVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+  LKKAV+RESTK+
Sbjct: 105 MANGMGFLPVQMVLEEDGFLKKAVERESTKI 135

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|595928591|ref|XP_007215132.1| (hypothetical protein PRUPE_ppa013087mg [Prunus persica])

HSP 1 Score: 137.9 bits (346), Expect = 9.2e-30
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIARVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+S LKKAV+REST++
Sbjct: 105 MANGMGFLPVQMVLEEDSFLKKAVERESTQI 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1Y0_CUCSA9.9e-3988.30Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1[more]
A0A061DTS7_THECC2.2e-3075.00Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
M5WSX9_PRUPE6.4e-3073.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013087mg PE=4 SV=1[more]
V7B090_PHAVU3.2e-2972.83Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G012000g PE=4 SV=1[more]
I1N566_SOYBN5.4e-2970.65Uncharacterized protein OS=Glycine max GN=GLYMA_18G290400 PE=4 SV=1[more]
BLAST of Cp4.1LG15g07200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44310.13.5e-1947.87 Calcium-binding EF-hand family protein[more]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110964|ref|XP_008455503.1|3.7e-3989.36PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo][more]
gi|449453565|ref|XP_004144527.1|1.4e-3888.30PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus][more]
gi|590711914|ref|XP_007049241.1|3.2e-3075.00Calcium-binding EF-hand family protein [Theobroma cacao][more]
gi|645247440|ref|XP_008229837.1|9.2e-3073.63PREDICTED: uncharacterized protein LOC103329186 [Prunus mume][more]
gi|595928591|ref|XP_007215132.1|9.2e-3073.63hypothetical protein PRUPE_ppa013087mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07200.1Cp4.1LG15g07200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 25..60
score: 9
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 18..60
score: 4.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 25..85
score: 1.4
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 38..50
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..66
score: 7.5
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..66
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g07200Cucsa.181080Cucumber (Gy14) v1cgycpeB0497
Cp4.1LG15g07200CmaCh11G017880Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g07200CmaCh19G008860Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07200CmoCh19G009000Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07200Cla015648Watermelon (97103) v1cpewmB268
Cp4.1LG15g07200Csa7G037620Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07200MELO3C018876Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g07200ClCG02G002430Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07200MELO3C018876.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07200CsaV3_7G002970Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07200Bhi05G001245Wax gourdcpewgoB0326
Cp4.1LG15g07200CsGy7G002760Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g07200Carg18052Silver-seed gourdcarcpeB1481
Cp4.1LG15g07200Carg04170Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g07200Cp4.1LG04g03940Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07200Cucumber (Gy14) v2cgybcpeB187
Cp4.1LG15g07200Silver-seed gourdcarcpeB0484
Cp4.1LG15g07200Cucumber (Chinese Long) v3cpecucB0290
Cp4.1LG15g07200Wax gourdcpewgoB0336
Cp4.1LG15g07200Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07200Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g07200Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07200Wild cucumber (PI 183967)cpecpiB237
Cp4.1LG15g07200Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07200Cucumber (Chinese Long) v2cpecuB233
Cp4.1LG15g07200Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07200Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07200Melon (DHL92) v3.5.1cpemeB214