Cp4.1LG15g07200 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG15g07200
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionCalcium-binding EF-hand family protein
LocationCp4.1LG15 : 7567508 .. 7567792 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

mRNA sequence

ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Coding sequence (CDS)

ATGCTGAAGGAGTTGCAGAGTCTTAGAGTGTTGGAGACCCATTTTGGAGTGGATGTGAAACCCGACCCGGAAGAGCTTTCCTCTGTTTATGCCTCGTTGTTCTCGCAGTTTGATCGGGACTGCAATGGGAAAGTTGATCTGGGTGAGTTCATGGCTGAAACCAGGAAGATGATGCTGGCCATGGCTAATGGTATTGGCCTTTCTCCTGTTCGAATGGTGTTGGAAGAGAATAGTCTCTTGAAGAAAGCTGTGGACAGAGAATCAACCAAACTCGCTGTTGCTTGA

Protein sequence

MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA
Homology
[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: A0A0A0K1Y0_CUCSA (Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 9.9e-39
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+D KPDP ELSSVY SLF QFDRDCNGKVDLGEFM ET+KMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.2e-30
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           +LKELQSLRV ETHFG+DVK DP+EL+ VY SLF QFD D NG VDLGEF AE+++MMLA
Sbjct: 45  LLKELQSLRVFETHFGIDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MANG+G  PV+M+LEE S LKKAVDRESTKLA
Sbjct: 105 MANGMGFLPVQMLLEEGSFLKKAVDRESTKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: M5WSX9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013087mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 6.4e-30
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIARVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+S LKKAV+REST++
Sbjct: 105 MANGMGFLPVQMVLEEDSFLKKAVERESTQI 135

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: V7B090_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G012000g PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 3.2e-29
Identity = 67/92 (72.83%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+DV+PDP+EL+ VY SLF QFD + NG +DL EF  ETRKMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDVEPDPDELAHVYESLFVQFDHNLNGTIDLEEFEKETRKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MA+G+G  PV+MVLEE+S+LK AV+RES KLA
Sbjct: 105 MADGLGFLPVQMVLEEDSILKTAVERESNKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match: I1N566_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_18G290400 PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 5.4e-29
Identity = 65/92 (70.65%), Postives = 80/92 (86.96%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+DV+PDP+EL+ VY SLF QFD + NG +DL EF  ET++MMLA
Sbjct: 45  MLKELQSLRVLETHFGIDVEPDPDELARVYESLFVQFDHNLNGTIDLDEFKKETKQMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MA+G+G  PV+MVLEE+S+LKKAV+RES K+A
Sbjct: 105 MADGLGFLPVQMVLEEDSILKKAVERESNKVA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 91.3 bits (225), Expect = 3.5e-19
Identity = 45/94 (47.87%), Postives = 70/94 (74.47%), Query Frame = 1 

Query: 3   KELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLAMA 62
           K  +S+R+LE+HFGVDV    +EL+++Y S+F +FD D +G VDL EF +E +K++LA+A
Sbjct: 47  KAFESMRLLESHFGVDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIA 106

Query: 63  NGIGLSPVRMVL--EENSLLKKAVDRESTKLAVA 95
           +G+G  P+ MVL  ++++ LKKA D E++KL  A
Sbjct: 107 DGLGSCPITMVLDDDDDNFLKKAADLEASKLEKA 140

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|659110964|ref|XP_008455503.1| (PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 3.7e-39
Identity = 84/94 (89.36%), Postives = 88/94 (93.62%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETHFG+D KPDP ELSSVYASLF QFDRDCNGKVDLGEFMAET+KMMLA
Sbjct: 45  MLKELQSLRVFETHFGIDTKPDPNELSSVYASLFLQFDRDCNGKVDLGEFMAETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|449453565|ref|XP_004144527.1| (PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus])

HSP 1 Score: 167.2 bits (422), Expect = 1.4e-38
Identity = 83/94 (88.30%), Postives = 87/94 (92.55%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRVLETHFG+D KPDP ELSSVY SLF QFDRDCNGKVDLGEFM ET+KMMLA
Sbjct: 45  MLKELQSLRVLETHFGIDTKPDPNELSSVYGSLFLQFDRDCNGKVDLGEFMEETKKMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLAVA 95
           MANGIGLSPV+M+LEENS LKKAVDRESTKLA A
Sbjct: 105 MANGIGLSPVQMLLEENSFLKKAVDRESTKLAAA 138

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|590711914|ref|XP_007049241.1| (Calcium-binding EF-hand family protein [Theobroma cacao])

HSP 1 Score: 139.4 bits (350), Expect = 3.2e-30
Identity = 69/92 (75.00%), Postives = 79/92 (85.87%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           +LKELQSLRV ETHFG+DVK DP+EL+ VY SLF QFD D NG VDLGEF AE+++MMLA
Sbjct: 45  LLKELQSLRVFETHFGIDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKLA 93
           MANG+G  PV+M+LEE S LKKAVDRESTKLA
Sbjct: 105 MANGMGFLPVQMLLEEGSFLKKAVDRESTKLA 136

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|645247440|ref|XP_008229837.1| (PREDICTED: uncharacterized protein LOC103329186 [Prunus mume])

HSP 1 Score: 137.9 bits (346), Expect = 9.2e-30
Identity = 67/91 (73.63%), Postives = 78/91 (85.71%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIAHVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+  LKKAV+RESTK+
Sbjct: 105 MANGMGFLPVQMVLEEDGFLKKAVERESTKI 135

[Close]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match: gi|595928591|ref|XP_007215132.1| (hypothetical protein PRUPE_ppa013087mg [Prunus persica])

HSP 1 Score: 137.9 bits (346), Expect = 9.2e-30
Identity = 67/91 (73.63%), Postives = 79/91 (86.81%), Query Frame = 1 

Query: 1   MLKELQSLRVLETHFGVDVKPDPEELSSVYASLFSQFDRDCNGKVDLGEFMAETRKMMLA 60
           MLKELQSLRV ETH+G+DVKPDPEE++ VY SLF QFD D NG VDL EF AET++MMLA
Sbjct: 45  MLKELQSLRVFETHYGIDVKPDPEEIARVYDSLFVQFDHDSNGAVDLEEFKAETKRMMLA 104

Query: 61  MANGIGLSPVRMVLEENSLLKKAVDRESTKL 92
           MANG+G  PV+MVLEE+S LKKAV+REST++
Sbjct: 105 MANGMGFLPVQMVLEEDSFLKKAVERESTQI 135

The following BLAST results are available for this feature:
BLAST of Cp4.1LG15g07200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG15g07200 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K1Y0_CUCSA9.9e-3988.30Calcium ion binding protein OS=Cucumis sativus GN=Csa_7G037620 PE=4 SV=1[more]
A0A061DTS7_THECC2.2e-3075.00Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
M5WSX9_PRUPE6.4e-3073.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013087mg PE=4 SV=1[more]
V7B090_PHAVU3.2e-2972.83Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_008G012000g PE=4 SV=1[more]
I1N566_SOYBN5.4e-2970.65Uncharacterized protein OS=Glycine max GN=GLYMA_18G290400 PE=4 SV=1[more]
BLAST of Cp4.1LG15g07200 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44310.13.5e-1947.87 Calcium-binding EF-hand family protein[more]
BLAST of Cp4.1LG15g07200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110964|ref|XP_008455503.1|3.7e-3989.36PREDICTED: uncharacterized protein LOC103495655 [Cucumis melo][more]
gi|449453565|ref|XP_004144527.1|1.4e-3888.30PREDICTED: uncharacterized protein LOC101208564 [Cucumis sativus][more]
gi|590711914|ref|XP_007049241.1|3.2e-3075.00Calcium-binding EF-hand family protein [Theobroma cacao][more]
gi|645247440|ref|XP_008229837.1|9.2e-3073.63PREDICTED: uncharacterized protein LOC103329186 [Prunus mume][more]
gi|595928591|ref|XP_007215132.1|9.2e-3073.63hypothetical protein PRUPE_ppa013087mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
Vocabulary: INTERPRO
TermDefinition
IPR018247EF_Hand_1_Ca_BS
IPR011992EF-hand-dom_pair
IPR002048EF_hand_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG15g07200.1Cp4.1LG15g07200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 25..60
score: 9
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 18..60
score: 4.
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 25..85
score: 1.4
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 38..50
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..66
score: 7.5
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..66
score: 7.5

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG15g07200Cucsa.181080Cucumber (Gy14) v1cgycpeB0497
Cp4.1LG15g07200CmaCh11G017880Cucurbita maxima (Rimu)cmacpeB115
Cp4.1LG15g07200CmaCh19G008860Cucurbita maxima (Rimu)cmacpeB522
Cp4.1LG15g07200CmoCh19G009000Cucurbita moschata (Rifu)cmocpeB481
Cp4.1LG15g07200Cla015648Watermelon (97103) v1cpewmB268
Cp4.1LG15g07200Csa7G037620Cucumber (Chinese Long) v2cpecuB257
Cp4.1LG15g07200MELO3C018876Melon (DHL92) v3.5.1cpemeB223
Cp4.1LG15g07200ClCG02G002430Watermelon (Charleston Gray)cpewcgB233
Cp4.1LG15g07200MELO3C018876.2Melon (DHL92) v3.6.1cpemedB261
Cp4.1LG15g07200CsaV3_7G002970Cucumber (Chinese Long) v3cpecucB0322
Cp4.1LG15g07200Bhi05G001245Wax gourdcpewgoB0326
Cp4.1LG15g07200CsGy7G002760Cucumber (Gy14) v2cgybcpeB910
Cp4.1LG15g07200Carg18052Silver-seed gourdcarcpeB1481
Cp4.1LG15g07200Carg04170Silver-seed gourdcarcpeB0281
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG15g07200Cp4.1LG04g03940Cucurbita pepo (Zucchini)cpecpeB267
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG15g07200Cucurbita pepo (Zucchini)cpecpeB255
Cp4.1LG15g07200Cucurbita maxima (Rimu)cmacpeB118
Cp4.1LG15g07200Cucurbita moschata (Rifu)cmocpeB093
Cp4.1LG15g07200Wild cucumber (PI 183967)cpecpiB237
Cp4.1LG15g07200Wild cucumber (PI 183967)cpecpiB257
Cp4.1LG15g07200Cucumber (Chinese Long) v2cpecuB233
Cp4.1LG15g07200Bottle gourd (USVL1VR-Ls)cpelsiB194
Cp4.1LG15g07200Bottle gourd (USVL1VR-Ls)cpelsiB199
Cp4.1LG15g07200Melon (DHL92) v3.5.1cpemeB214
Cp4.1LG15g07200Cucumber (Gy14) v2cgybcpeB187
Cp4.1LG15g07200Silver-seed gourdcarcpeB0484
Cp4.1LG15g07200Cucumber (Chinese Long) v3cpecucB0290
Cp4.1LG15g07200Wax gourdcpewgoB0336