Cla015648 (gene) Watermelon (97103) v1

NameCla015648
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionCalcium-binding EF-hand family protein-like (AHRD V1 **** Q6ZFI7_ORYSJ); contains Interpro domain(s) IPR011992 EF-Hand type
LocationChr2 : 2332380 .. 2332793 (-)
   



The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGTGGAAATATTGGACAGTACGACCATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAGTGCCTACATAAGAGACCGGTTCAATTACCTCGACACTAACCATGATGGTCTCCTTTCCTATAATGAGCTACTGGAGGAGTTACAGAGCCTCAGGGTGTTCGAGACCGATTTCGGAATTGATGAGAAGCCTGATCCAGATGAGCTTTCTTCAGTGTATAGTTCTCTGTTTTTGCAATTCGATCGTGACTTGGATGGAACGGTTAATCTGGATGAGTATAAGACTGAGACCAAAAGAATGATGCTAGCTATGGCTAATGGGATGGGTTTCTTACCTGTTCAGATGGTGCTTGAAGAAGGCAGCTTCTTGATGAAGGCTGTTGAGCGAGAAACTGCAATAATGGCCGCTTGA

mRNA sequence

ATGAGTGTGGAAATATTGGACAGTACGACCATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAGTGCCTACATAAGAGACCGGTTCAATTACCTCGACACTAACCATGATGGTCTCCTTTCCTATAATGAGCTACTGGAGGAGTTACAGAGCCTCAGGGTGTTCGAGACCGATTTCGGAATTGATGAGAAGCCTGATCCAGATGAGCTTTCTTCAGTGTATAGTTCTCTGTTTTTGCAATTCGATCGTGACTTGGATGGAACGGTTAATCTGGATGAGTATAAGACTGAGACCAAAAGAATGATGCTAGCTATGGCTAATGGGATGGGTTTCTTACCTGTTCAGATGGTGCTTGAAGAAGGCAGCTTCTTGATGAAGGCTGTTGAGCGAGAAACTGCAATAATGGCCGCTTGA

Coding sequence (CDS)

ATGAGTGTGGAAATATTGGACAGTACGACCATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAGTGCCTACATAAGAGACCGGTTCAATTACCTCGACACTAACCATGATGGTCTCCTTTCCTATAATGAGCTACTGGAGGAGTTACAGAGCCTCAGGGTGTTCGAGACCGATTTCGGAATTGATGAGAAGCCTGATCCAGATGAGCTTTCTTCAGTGTATAGTTCTCTGTTTTTGCAATTCGATCGTGACTTGGATGGAACGGTTAATCTGGATGAGTATAAGACTGAGACCAAAAGAATGATGCTAGCTATGGCTAATGGGATGGGTTTCTTACCTGTTCAGATGGTGCTTGAAGAAGGCAGCTTCTTGATGAAGGCTGTTGAGCGAGAAACTGCAATAATGGCCGCTTGA

Protein sequence

MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFGIDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEEGSFLMKAVERETAIMAA
BLAST of Cla015648 vs. TrEMBL
Match: A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 2.4e-57
Identity = 118/137 (86.13%), Postives = 126/137 (91.97%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILD TTIVNFVEDEAAF+AYIR +F +LDT+HDGLLSYNE+LEELQSLRVF+ DFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
            DEK  PDELSSVYSSLFLQFDRD DG V+LD YKTE KRMMLAMANG+GFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

BLAST of Cla015648 vs. TrEMBL
Match: A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 3.1e-57
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF +LDTN DGLLSY+E+LEEL +LRVFET FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           ID KPDPDELSSVYSSLFLQFDRD  GTV+LDE++ ETKRMMLAMANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla015648 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 3.6e-50
Identity = 101/137 (73.72%), Postives = 123/137 (89.78%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVE+LDS TIV+FVEDE AF+  IR+RF +LDT+HDGLLSY E+++EL+SLRVFET FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           IDEKPDP+EL+SVY+SLF+QFD D +GTV+L+E+K ETK+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

BLAST of Cla015648 vs. TrEMBL
Match: V4W4I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 3.1e-49
Identity = 100/137 (72.99%), Postives = 121/137 (88.32%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVE+LD  TIV+FVEDE AF+  IR+RF +LDT+HDGLLSY E+++EL+SLRVFET FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           IDEKPDP+EL+SVY+SLF+QFD D +GTV+L+E+K ETK+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKEETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E    AA
Sbjct: 121 DSFLMKAVEKEFTAKAA 137

BLAST of Cla015648 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 4.0e-49
Identity = 102/137 (74.45%), Postives = 119/137 (86.86%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVE+LDS TIVNFVEDE AF+ +I DRF +LDT+HDGLLSY ELL+ELQSLRVFET FG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           ID K DP EL+ VY+SLF+QFD D +GTV+L E+K E+KRMMLAMANGMGFLPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFL KAV+RE+  +AA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

BLAST of Cla015648 vs. NCBI nr
Match: gi|659110959|ref|XP_008455501.1| (PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo])

HSP 1 Score: 240.7 bits (613), Expect = 1.5e-60
Identity = 123/137 (89.78%), Postives = 129/137 (94.16%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILDSTTIVNFVEDEAAF+AYIRDRF +LDTNHDGLLSYNE+LEELQSLRVFE DFG
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
            D+K DPDELSSVYSSLFLQFDRD DG V+LD YKTE KRMMLAMANG+GFLPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

BLAST of Cla015648 vs. NCBI nr
Match: gi|778723608|ref|XP_011658679.1| (PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus])

HSP 1 Score: 229.6 bits (584), Expect = 3.4e-57
Identity = 118/137 (86.13%), Postives = 126/137 (91.97%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILD TTIVNFVEDEAAF+AYIR +F +LDT+HDGLLSYNE+LEELQSLRVF+ DFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
            DEK  PDELSSVYSSLFLQFDRD DG V+LD YKTE KRMMLAMANG+GFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

BLAST of Cla015648 vs. NCBI nr
Match: gi|778716395|ref|XP_011657544.1| (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 229.2 bits (583), Expect = 4.4e-57
Identity = 116/137 (84.67%), Postives = 125/137 (91.24%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF +LDTN DGLLSY+E+LEEL +LRVFET FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           ID KPDPDELSSVYSSLFLQFDRD  GTV+LDE++ ETKRMMLAMANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla015648 vs. NCBI nr
Match: gi|659097011|ref|XP_008449396.1| (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 227.6 bits (579), Expect = 1.3e-56
Identity = 115/137 (83.94%), Postives = 124/137 (90.51%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF +LDTNHDGLLSY+E+LEEL +LRVFET FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           ID KPDP+ELSSVYSSLFLQFD D  GTV+LDE+K ETKRMML MANGMGFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

BLAST of Cla015648 vs. NCBI nr
Match: gi|567910763|ref|XP_006447695.1| (hypothetical protein CICLE_v10018069mg [Citrus clementina])

HSP 1 Score: 205.7 bits (522), Expect = 5.2e-50
Identity = 101/137 (73.72%), Postives = 123/137 (89.78%), Query Frame = 1

Query: 1   MSVEILDSTTIVNFVEDEAAFSAYIRDRFNYLDTNHDGLLSYNELLEELQSLRVFETDFG 60
           MSVE+LDS TIV+FVEDE AF+  IR+RF +LDT+HDGLLSY E+++EL+SLRVFET FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  IDEKPDPDELSSVYSSLFLQFDRDLDGTVNLDEYKTETKRMMLAMANGMGFLPVQMVLEE 120
           IDEKPDP+EL+SVY+SLF+QFD D +GTV+L+E+K ETK+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0K3B2_CUCSA2.4e-5786.13Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1[more]
A0A0A0KHT7_CUCSA3.1e-5784.67Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1[more]
V4U9W3_9ROSI3.6e-5073.72Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1[more]
V4W4I0_9ROSI3.1e-4972.99Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1[more]
A0A061DTS7_THECC4.0e-4974.45Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
gi|659110959|ref|XP_008455501.1|1.5e-6089.78PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo][more]
gi|778723608|ref|XP_011658679.1|3.4e-5786.13PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus][more]
gi|778716395|ref|XP_011657544.1|4.4e-5784.67PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus][more]
gi|659097011|ref|XP_008449396.1|1.3e-5683.94PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo][more]
gi|567910763|ref|XP_006447695.1|5.2e-5073.72hypothetical protein CICLE_v10018069mg [Citrus clementina][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU43970watermelon EST collection version 2.0transcribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla015648Cla015648.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU43970WMU43970transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 25..96
score: 6.7
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 20..55
score: 9.632coord: 69..104
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 27..99
score: 4.3
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 23..96
score: 4.99
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..135
score: 1.2
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..135
score: 1.2

The following gene(s) are paralogous to this gene:

None