MELO3C018876 (gene) Melon (DHL92) v3.5.1

Overview
NameMELO3C018876
Typegene
OrganismCucumis melo (Melon (DHL92) v3.5.1)
DescriptionCalcium-binding EF-hand family protein
Locationchr1 : 3551580 .. 3552459 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATATGACGAAACCTGAGCCAACCTTCTGCTCGTCAAAAACCCAACTCCAAATCTTTTCCTATACCTTCCAATTTCCTCTTTTAATTCAGCTAAATATCAGGACTAGGTAAAATGAGTGTGGAAATATTGGACAGTACCACAATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAATGCCTATATAAGAGATCGATTCACTCACCTTGACACTAACCATGATGGTCTCCTTTCCTATAATGAGATGCTGGAGGAGTTACAGAGTCTTAGGGTGTTCGAAGCCGATTTTGGGAACGATAAGAAGCTTGATCCAGATGAGCTTTCGTCTGTCTATAGTTCTCTGTTTTTGCAATTTGATCGTGACTCAGATGGAATGGTTGATCTGGATGCGTATAAGACTGAGATCAAAAGAATGATGCTAGCTATGGCTAATGGGATTGGCTTCTTGCCTGTTCAGATGGTGCTTGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGCGTGAAACTGCAATAATGGCTGCTTGAGTAAAGTTACCTTTAACTCTCTGTATTAGTAAATTCAAGAAACAATTCGAAAGAGTGAGGTTTTTGTTAACTGAAATAAGAAATATTATTTTTCTTTTTGTCAAAAAAATTTCCTCTAGATTCAAAAGATTAGTAGCCATTAACTTACACGTAATTCCACAGCAACATGAACAGTGTTTTCTACTTGAAGATGGATGATGGTTATTATAAGAACAGAGACAATTCAGGAGCAGGAATGAAGCAGAACATACTTTCACCAAACAAATCTAACATAGATGTTAACAACTTTCCAGAATTAAGATCCTCCTTCCAGACTTGAGATAGAACAGCTGATCTTTTAAGAATTTGATCATCA

mRNA sequence

ATATGACGAAACCTGAGCCAACCTTCTGCTCGTCAAAAACCCAACTCCAAATCTTTTCCTATACCTTCCAATTTCCTCTTTTAATTCAGCTAAATATCAGGACTAGGTAAAATGAGTGTGGAAATATTGGACAGTACCACAATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAATGCCTATATAAGAGATCGATTCACTCACCTTGACACTAACCATGATGGTCTCCTTTCCTATAATGAGATGCTGGAGGAGTTACAGAGTCTTAGGGTGTTCGAAGCCGATTTTGGGAACGATAAGAAGCTTGATCCAGATGAGCTTTCGTCTGTCTATAGTTCTCTGTTTTTGCAATTTGATCGTGACTCAGATGGAATGGTTGATCTGGATGCGTATAAGACTGAGATCAAAAGAATGATGCTAGCTATGGCTAATGGGATTGGCTTCTTGCCTGTTCAGATGGTGCTTGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGCGTGAAACTGCAATAATGGCTGCTTGAGTAAAGTTACCTTTAACTCTCTGTATTAGTAAATTCAAGAAACAATTCGAAAGAGTGAGGTTTTTGTTAACTGAAATAAGAAATATTATTTTTCTTTTTGTCAAAAAAATTTCCTCTAGATTCAAAAGATTAGTAGCCATTAACTTACACGTAATTCCACAGCAACATGAACAGTGTTTTCTACTTGAAGATGGATGATGGTTATTATAAGAACAGAGACAATTCAGGAGCAGGAATGAAGCAGAACATACTTTCACCAAACAAATCTAACATAGATGTTAACAACTTTCCAGAATTAAGATCCTCCTTCCAGACTTGAGATAGAACAGCTGATCTTTTAAGAATTTGATCATCA

Coding sequence (CDS)

ATGAGTGTGGAAATATTGGACAGTACCACAATTGTCAACTTTGTTGAAGATGAGGCAGCTTTTAATGCCTATATAAGAGATCGATTCACTCACCTTGACACTAACCATGATGGTCTCCTTTCCTATAATGAGATGCTGGAGGAGTTACAGAGTCTTAGGGTGTTCGAAGCCGATTTTGGGAACGATAAGAAGCTTGATCCAGATGAGCTTTCGTCTGTCTATAGTTCTCTGTTTTTGCAATTTGATCGTGACTCAGATGGAATGGTTGATCTGGATGCGTATAAGACTGAGATCAAAAGAATGATGCTAGCTATGGCTAATGGGATTGGCTTCTTGCCTGTTCAGATGGTGCTTGAAGAGGGCAGCTTCTTGATGAAGGCTGTTGAGCGTGAAACTGCAATAATGGCTGCTTGA

Protein sequence

MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFGNDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEEGSFLMKAVERETAIMAA*
Homology
[Close]
BLAST of MELO3C018876 vs. TrEMBL
Match: A0A0A0K3B2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.5e-64
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILD TTIVNFVEDEAAFNAYIR +F HLDT+HDGLLSYNEMLEELQSLRVF+ADFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
           ND+KL PDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

[Close]
BLAST of MELO3C018876 vs. TrEMBL
Match: A0A0A0KHT7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF HLDTN DGLLSY+EMLEEL +LRVFE  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D K DPDELSSVYSSLFLQFDRDS G VDLD ++ E KRMMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]
BLAST of MELO3C018876 vs. TrEMBL
Match: V4U9W3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 3.4e-48
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVE+LDS TIV+FVEDE AFN  IR+RF HLDT+HDGLLSY EM++EL+SLRVFE  FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D+K DP+EL+SVY+SLF+QFD DS+G VDL+ +K E K+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

[Close]
BLAST of MELO3C018876 vs. TrEMBL
Match: A0A061DTS7_THECC (Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.5e-48
Identity = 100/137 (72.99%), Postives = 115/137 (83.94%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVE+LDS TIVNFVEDE AFN +I DRF HLDT+HDGLLSY E+L+ELQSLRVFE  FG
Sbjct: 1   MSVEVLDSATIVNFVEDEEAFNVWICDRFAHLDTDHDGLLSYAELLKELQSLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D K DP EL+ VY+SLF+QFD DS+G VDL  +K E KRMMLAMANG+GFLPVQM+LEE
Sbjct: 61  IDVKTDPKELAHVYNSLFVQFDHDSNGTVDLGEFKAESKRMMLAMANGMGFLPVQMLLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFL KAV+RE+  +AA
Sbjct: 121 GSFLKKAVDRESTKLAA 137

[Close]
BLAST of MELO3C018876 vs. TrEMBL
Match: V4W4I0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 2.9e-47
Identity = 98/137 (71.53%), Postives = 116/137 (84.67%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVE+LD  TIV+FVEDE AFN  IR+RF HLDT+HDGLLSY EM++EL+SLRVFE  FG
Sbjct: 1   MSVEVLDGATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D+K DP+EL+SVY+SLF+QFD DS+G VDL+ +K E K+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKEETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E    AA
Sbjct: 121 DSFLMKAVEKEFTAKAA 137

[Close]
BLAST of MELO3C018876 vs. TAIR10
Match: AT2G44310.1 (AT2G44310.1 Calcium-binding EF-hand family protein)

HSP 1 Score: 112.8 bits (281), Expect = 1.6e-25
Identity = 54/135 (40.00%), Postives = 91/135 (67.41%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           M V ++D +T+ +FV+DE  F   + +RF  LD N DG+LS +E+ +  +S+R+ E+ FG
Sbjct: 1   MGVVLIDGSTVRSFVDDEEQFKKSVDERFAALDLNKDGVLSRSELRKAFESMRLLESHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVL-- 120
            D     DEL+++Y S+F +FD D  G VDL+ +++E+K+++LA+A+G+G  P+ MVL  
Sbjct: 61  VDVVTPQDELTNLYDSIFEKFDTDQSGSVDLEEFRSEMKKIVLAIADGLGSCPITMVLDD 120

Query: 121 EEGSFLMKAVERETA 134
           ++ +FL KA + E +
Sbjct: 121 DDDNFLKKAADLEAS 135

[Close]
BLAST of MELO3C018876 vs. TAIR10
Match: AT1G54530.1 (AT1G54530.1 Calcium-binding EF hand family protein)

HSP 1 Score: 61.6 bits (148), Expect = 4.3e-10
Identity = 39/128 (30.47%), Postives = 68/128 (53.12%), Query Frame = 1 

Query: 5   ILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFGNDKK 64
           ++ S T++ F+ D  +F +   D F  LD + +G+LS +E+ + L ++   E++      
Sbjct: 5   VITSKTLIGFLSDTKSFESITNDYFQILDLDKNGMLSPSELRQGLNNVVAVESEVAPG-- 64

Query: 65  LDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEEGSFL 124
              DE  +VY+++F +F  D   +V  + ++  I  ++ AMA GIG  PV MV+     +
Sbjct: 65  ---DETDNVYNAIFERFGED---LVPKN-FRDLIAEILTAMARGIGNSPVIMVVHNDGLI 123

Query: 125 MKAVERET 133
           MKAV  E+
Sbjct: 125 MKAVLHES 123

[Close]
BLAST of MELO3C018876 vs. NCBI nr
Match: gi|659110959|ref|XP_008455501.1| (PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 5.1e-69
Identity = 137/137 (100.00%), Postives = 137/137 (100.00%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG
Sbjct: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
           NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE
Sbjct: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

[Close]
BLAST of MELO3C018876 vs. NCBI nr
Match: gi|778723608|ref|XP_011658679.1| (PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus])

HSP 1 Score: 253.4 bits (646), Expect = 2.2e-64
Identity = 129/137 (94.16%), Postives = 133/137 (97.08%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILD TTIVNFVEDEAAFNAYIR +F HLDT+HDGLLSYNEMLEELQSLRVF+ADFG
Sbjct: 1   MSVEILDGTTIVNFVEDEAAFNAYIRAQFAHLDTDHDGLLSYNEMLEELQSLRVFDADFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
           ND+KL PDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE
Sbjct: 61  NDEKLGPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAIMAA
Sbjct: 121 GSFLMKAVERETAIMAA 137

[Close]
BLAST of MELO3C018876 vs. NCBI nr
Match: gi|778716395|ref|XP_011657544.1| (PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 113/137 (82.48%), Postives = 120/137 (87.59%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF HLDTN DGLLSY+EMLEEL +LRVFE  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNRDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D K DPDELSSVYSSLFLQFDRDS G VDLD ++ E KRMMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDVKPDPDELSSVYSSLFLQFDRDSSGTVDLDEFRAETKRMMLAMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]
BLAST of MELO3C018876 vs. NCBI nr
Match: gi|659097011|ref|XP_008449396.1| (PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 4.6e-54
Identity = 112/137 (81.75%), Postives = 119/137 (86.86%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVEILDS TIVNFVED+ AF A+IRDRF HLDTNHDGLLSY+EMLEEL +LRVFE  FG
Sbjct: 1   MSVEILDSATIVNFVEDDVAFGAFIRDRFAHLDTNHDGLLSYSEMLEELHTLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D K DP+ELSSVYSSLFLQFD DS G VDLD +K E KRMML MANG+GFLPVQMVLEE
Sbjct: 61  IDVKPDPEELSSVYSSLFLQFDHDSSGTVDLDEFKAETKRMMLDMANGMGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
           GSFLMKAVERETAI AA
Sbjct: 121 GSFLMKAVERETAITAA 137

[Close]
BLAST of MELO3C018876 vs. NCBI nr
Match: gi|567910763|ref|XP_006447695.1| (hypothetical protein CICLE_v10018069mg [Citrus clementina])

HSP 1 Score: 199.1 bits (505), Expect = 4.9e-48
Identity = 99/137 (72.26%), Postives = 118/137 (86.13%), Query Frame = 1 

Query: 1   MSVEILDSTTIVNFVEDEAAFNAYIRDRFTHLDTNHDGLLSYNEMLEELQSLRVFEADFG 60
           MSVE+LDS TIV+FVEDE AFN  IR+RF HLDT+HDGLLSY EM++EL+SLRVFE  FG
Sbjct: 1   MSVEVLDSATIVSFVEDEEAFNNSIRNRFAHLDTDHDGLLSYAEMMQELKSLRVFETHFG 60

Query: 61  NDKKLDPDELSSVYSSLFLQFDRDSDGMVDLDAYKTEIKRMMLAMANGIGFLPVQMVLEE 120
            D+K DP+EL+SVY+SLF+QFD DS+G VDL+ +K E K+MMLAMANG+GFLPVQMVLEE
Sbjct: 61  IDEKPDPEELASVYNSLFVQFDHDSNGTVDLEEFKAETKQMMLAMANGLGFLPVQMVLEE 120

Query: 121 GSFLMKAVERETAIMAA 138
            SFLMKAVE+E+   AA
Sbjct: 121 DSFLMKAVEKESTAKAA 137

The following BLAST results are available for this feature:
BLAST of MELO3C018876 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3B2_CUCSA1.5e-6494.16Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037625 PE=4 SV=1[more]
A0A0A0KHT7_CUCSA1.1e-5482.48Uncharacterized protein OS=Cucumis sativus GN=Csa_6G418660 PE=4 SV=1[more]
V4U9W3_9ROSI3.4e-4872.26Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018069mg PE=4 SV=1[more]
A0A061DTS7_THECC4.5e-4872.99Calcium-binding EF-hand family protein OS=Theobroma cacao GN=TCM_002258 PE=4 SV=... [more]
V4W4I0_9ROSI2.9e-4771.53Uncharacterized protein OS=Citrus clementina GN=CICLE_v10018354mg PE=4 SV=1[more]
BLAST of MELO3C018876 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G44310.11.6e-2540.00 Calcium-binding EF-hand family protein[more]
AT1G54530.14.3e-1030.47 Calcium-binding EF hand family protein[more]
BLAST of MELO3C018876 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659110959|ref|XP_008455501.1|5.1e-69100.00PREDICTED: uncharacterized protein LOC103495653 [Cucumis melo][more]
gi|778723608|ref|XP_011658679.1|2.2e-6494.16PREDICTED: uncharacterized protein LOC105436072 [Cucumis sativus][more]
gi|778716395|ref|XP_011657544.1|1.6e-5482.48PREDICTED: uncharacterized protein LOC105435869 [Cucumis sativus][more]
gi|659097011|ref|XP_008449396.1|4.6e-5481.75PREDICTED: uncharacterized protein LOC103491294 [Cucumis melo][more]
gi|567910763|ref|XP_006447695.1|4.9e-4872.26hypothetical protein CICLE_v10018069mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002048EF_hand_dom
IPR011992EF-hand-dom_pair
IPR018247EF_Hand_1_Ca_BS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005509 calcium ion binding
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
MU54222melon EST collection version 4.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C018876T1MELO3C018876T1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
MU54222MU54222transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of melon
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002048EF-hand domainPFAMPF13499EF-hand_7coord: 25..94
score: 6.
IPR002048EF-hand domainSMARTSM00054efh_1coord: 24..52
score: 0.85coord: 73..101
score:
IPR002048EF-hand domainPROFILEPS50222EF_HAND_2coord: 20..55
score: 9.185coord: 69..104
score: 8
IPR011992EF-hand domain pairGENE3DG3DSA:1.10.238.10coord: 18..100
score: 7.7
IPR011992EF-hand domain pairunknownSSF47473EF-handcoord: 24..102
score: 1.94
IPR018247EF-Hand 1, calcium-binding sitePROSITEPS00018EF_HAND_1coord: 33..45
scor
NoneNo IPR availablePANTHERPTHR10891EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEINcoord: 1..135
score: 1.1
NoneNo IPR availablePANTHERPTHR10891:SF615SUBFAMILY NOT NAMEDcoord: 1..135
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
MELO3C018876Csa7G037620Cucumber (Chinese Long) v2cumeB530
MELO3C018876Cla015648Watermelon (97103) v1mewmB241
MELO3C018876ClCG02G002430Watermelon (Charleston Gray)mewcgB195
MELO3C018876Cla97C02G028880Watermelon (97103) v2mewmbB178
MELO3C018876Bhi05G001245Wax gourdmewgoB212
MELO3C018876CSPI07G03090Wild cucumber (PI 183967)cpimeB535
MELO3C018876CmaCh11G017880Cucurbita maxima (Rimu)cmameB099
MELO3C018876CmaCh19G008860Cucurbita maxima (Rimu)cmameB461
MELO3C018876CmoCh19G009000Cucurbita moschata (Rifu)cmomeB452
MELO3C018876CmoCh11G018650Cucurbita moschata (Rifu)cmomeB090
MELO3C018876Lsi11G013850Bottle gourd (USVL1VR-Ls)lsimeB095
MELO3C018876Cp4.1LG15g07200Cucurbita pepo (Zucchini)cpemeB223
MELO3C018876Cp4.1LG04g03940Cucurbita pepo (Zucchini)cpemeB609
MELO3C018876CsGy7G002760Cucumber (Gy14) v2cgybmeB467
MELO3C018876Carg18052Silver-seed gourdcarmeB1033
MELO3C018876Carg04170Silver-seed gourdcarmeB0199
MELO3C018876CsaV3_7G002970Cucumber (Chinese Long) v3cucmeB547
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
MELO3C018876Cucumber (Chinese Long) v3cucmeB107
MELO3C018876Cucumber (Chinese Long) v3cucmeB548
MELO3C018876Wax gourdmewgoB235
MELO3C018876Cucumber (Gy14) v1cgymeB327
MELO3C018876Wild cucumber (PI 183967)cpimeB103
MELO3C018876Wild cucumber (PI 183967)cpimeB538
MELO3C018876Cucumber (Chinese Long) v2cumeB103
MELO3C018876Cucurbita pepo (Zucchini)cpemeB273
MELO3C018876Bottle gourd (USVL1VR-Ls)lsimeB067
MELO3C018876Cucumber (Gy14) v2cgybmeB089
MELO3C018876Cucumber (Gy14) v2cgybmeB468