Carg15041 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg15041
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox-leucine zipper protein like
Location	Cucurbita_argyrosperma_scaffold_078 : 256332 .. 259047 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGGTGAGGTGGGGAAGGGACTTCTCCCCTCGCACGCACGCACGCACGCACGCAGGGGCGCGCGGGCAACAAACGGCAACGAACAACGTACAAAAACAAGGATGATGGCTAATTAAAAGAGGAGGACTGCAATGGGCAATGGTATGGGTGGCCGCAGGGGAGGAGGGGGAGACGGCGGACGTAGCAGCACCGAAAGGCTGAGAAAATGCATGGAATAAAGGTGGGGTGAATGAGGGGGGAGGAGGGCATCCGGCAACTGGAAATGCAAAATGCAAATGCAAATGCAAATTTCGAAGTCGAAAACACAAAATTCAAATTCAGTAATTAATTGCTTGTCTTCTCTTTCTCCTGTCTCCCCCACTCCCTATTCTGAACCCGCGGGAAAACAGGTTGTTATCATAAAATCCCATTTTAGATAAAAGGATGGAAATGGAACAAACACATCATCATTATTATTAGAAGGTGCTTCATAGTCCACACACACACCCTTCCCCCCACCATCTCCCTCTCAGCACCTCATTTCCTCCCCCTTTCTTCTCCTCTTTGCATTCCCCTTTTCAAAATCACACCAAATCTTTCCTTCTCAATTTTAGGTAATATCAAAACCCTTCTAAACCAATCACTAACTTACCTCCACATTCCCAAACTCCCCCACCAAACTTCAGTGCCTTTCTTTTTCCTTTTTTCCTTTTTCCCCAGCTTTTCACGGACCCCAGCTTCCCACTCACACACTTCGTAGCTTCAACTTTTCAAAGGAGACTGTCAGCATCATCAACTCAAGGAAACACATTGAATTCCATCGCTTCCTGTCCTGCCATCCATCTCCAGCCCAACAAAACACCACATTGAATTCCATCGCTTTTTCCTGCCAACCAACTGCTCCCTCTGTAAGCCACAGCCAGATATTATCATCCTTCAAAACTAAAGTTAGAGGCTCTGATTGAAACCATGACTATGATATTTTTGTAAAAGAGCAGATATGTGTGGCTATGTAGAAGAAAAGGTGTTGAATGCATTCCAAGTTAGCTAGGGGATAAGCATGCAGTGTAGTGCTTTTTGACACTTACCAAGCCTTTATAGCAAAAGCGTTTCAGCAAGAAGGAAAAAATGCTGTACAGGGTTGTGGTCTTCTTAGTTTTGAAGCCGAAAAGGGAAAATGGGTGCAGATAAGCACTAGGGATGGACTGGAAAAGGCCACACGTTAGCGAACTCCATTGGTCTTCCATGCAGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTTCTGAGCATTTTCATCAGTTGATGAGTAAACAGTATGCTGCCATTTGAAACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAGTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTTAACAAAGTCCCAACGCAACTTGCAATGGCTAAACTTGAGGGGATTCCAAAGTATACTAAAGATTGGCTCCTAAACATTGGTCTTATTACTACCAGGTGGAAGATTACCAATTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATCGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGTCGTAGTTGAATTACGAAATAAACAGATATAAGGACACTATAGGAAGTTCATCACTCGCATGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTT

mRNA sequence

ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAGTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTTAACAAAGTCCCAACGCAACTTGCAATGGCTAAACTTGAGGGGATTCCAAAGTATACTAAAGATTGGCTCCTAAACATTGGTCTTATTACTACCAGGTGGAAGATTACCAATTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATCGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGTCGTAGTTGAATTACGAAATAAACAGATATAAGGACACTATAGGAAGTTCATCACTCGCATGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTT

Coding sequence (CDS)

ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA

Protein sequence

MVGGAGLEMEVEDEGEGEEREEEDNGDEGDGGEIEGRRIQERERSNEEHRFLSVAPGKLVSHFSYLPYPPIYSVLFSCVVFRRMNGQKLTPRRRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG

Homology

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BLAST of Carg15041 vs. NCBI nr
Match: XP_022923069.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 8.2e-106
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 45  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 104

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS
Sbjct: 105 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 164

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQ+GVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSND SHAVEKACQLLNPN
Sbjct: 165 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 224

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG
Sbjct: 225 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 260

[Close]

BLAST of Carg15041 vs. NCBI nr
Match: XP_022923068.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 8.2e-106
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 59  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 118

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS
Sbjct: 119 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 178

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQ+GVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSND SHAVEKACQLLNPN
Sbjct: 179 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 238

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG
Sbjct: 239 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 274

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BLAST of Carg15041 vs. NCBI nr
Match: XP_023553122.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_023553124.1 homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 1.9e-102
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 42  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 101

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELV EGPREGHYSNEIA+TIYETKEKPQS
Sbjct: 102 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVQEGPREGHYSNEIAKTIYETKEKPQS 161

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPN
Sbjct: 162 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPN 221

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
            SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 222 SSFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 257

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BLAST of Carg15041 vs. NCBI nr
Match: XP_022984932.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 5.7e-99
Identity = 204/215 (94.88%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRR RWKSKEMENNFRS
Sbjct: 43  SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRS 102

Query: 173 LRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQSF 232
           LRANYDN  XXXXXXXXXXXXXXXXXX  SELV EGPREGHYSNEIA+TIYETKEKPQSF
Sbjct: 103 LRANYDNXXXXXXXXXXXXXXXXXXXXXXSELVQEGPREGHYSNEIAKTIYETKEKPQSF 162

Query: 233 HDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNG 292
           HDELGQSGVTYL+NNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPNG
Sbjct: 163 HDELGQSGVTYLSNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNG 222

Query: 293 SFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 223 SFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 257

[Close]

BLAST of Carg15041 vs. NCBI nr
Match: XP_022984931.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 5.7e-99
Identity = 204/215 (94.88%), Postives = 207/215 (96.28%), Query Frame = 0


Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRR RWKSKEMENNFRS
Sbjct: 57  SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRS 116

Query: 173 LRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQSF 232
           LRANYDN  XXXXXXXXXXXXXXXXXX  SELV EGPREGHYSNEIA+TIYETKEKPQSF
Sbjct: 117 LRANYDNXXXXXXXXXXXXXXXXXXXXXXSELVQEGPREGHYSNEIAKTIYETKEKPQSF 176

Query: 233 HDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNG 292
           HDELGQSGVTYL+NNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPNG
Sbjct: 177 HDELGQSGVTYLSNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNG 236

Query: 293 SFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 237 SFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 271

[Close]

BLAST of Carg15041 vs. TAIR10
Match: AT2G46680.1 (homeobox 7)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-17
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNF 171
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN+RARWKSK++E  +
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

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BLAST of Carg15041 vs. TAIR10
Match: AT3G61890.1 (homeobox 12)

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKE 166
           FS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ+AIWFQN+RARWK+K+
Sbjct: 34  FSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86

[Close]

BLAST of Carg15041 vs. TAIR10
Match: AT2G18550.1 (homeobox protein 21)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0


Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQ+R LE I +  D KL+S +K +LA+ELGL PRQ+A+WFQNRRARWK+K +E+ +  
Sbjct: 66  SDEQVRMLE-ISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTK 125

Query: 173 LRANYD 179
           L+  Y+
Sbjct: 126 LKNAYE 130

[Close]

BLAST of Carg15041 vs. TAIR10
Match: AT5G03790.1 (homeobox 51)

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+ SLE  F   + KLDS +KV+L+ ELGLQPRQIA+WFQNRRARWK+K++E  + SLR 
Sbjct: 85  QLASLERSF-QEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQ 144

Query: 176 NYD 179
            YD
Sbjct: 145 EYD 146

[Close]

BLAST of Carg15041 vs. TAIR10
Match: AT4G36740.1 (homeobox protein 40)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           +DEQ+  LE  F   + KL+S +K +LA ELGL PRQ+A+WFQNRRARWK+K +E  +  
Sbjct: 60  TDEQVNMLEMSF-GDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNK 119

Query: 173 LRANYDNL 181
           L+ ++DN+
Sbjct: 120 LKNSHDNV 126

[Close]

BLAST of Carg15041 vs. Swiss-Prot
Match: sp|Q01IK0|HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18
Identity = 42/69 (60.87%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 172 SLRANYDNL 181
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]

BLAST of Carg15041 vs. Swiss-Prot
Match: sp|Q7XUJ5|HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18
Identity = 42/69 (60.87%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 172 SLRANYDNL 181
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]

BLAST of Carg15041 vs. Swiss-Prot
Match: sp|A2X7U1|HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=HOX24 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ +LRA
Sbjct: 73  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 132

Query: 176 NYDNL 181
            YD L
Sbjct: 133 QYDAL 137

[Close]

BLAST of Carg15041 vs. Swiss-Prot
Match: sp|Q6H6S3|HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX24 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ +LRA
Sbjct: 72  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 131

Query: 176 NYDNL 181
            YD L
Sbjct: 132 QYDAL 136

[Close]

BLAST of Carg15041 vs. Swiss-Prot
Match: sp|P46897|ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 7.0e-16
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNF 171
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN+RARWKSK++E  +
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

[Close]

BLAST of Carg15041 vs. TrEMBL
Match: tr|A0A067JWT5|A0A067JWT5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 81/218 (37.16%), Postives = 115/218 (52.75%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 93  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 152

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL+EL+ +   EG    E  ET   + E    
Sbjct: 153 VLRANYNNLASRFETLKKEKQALAIQLQKLNELIEKPREEGECCGE-QETGVNSSE---- 212

Query: 232 FHDELGQSGVTYLNNNYNTDKRG---TENGEGDRGLEMTHSSEGRSNDISHAVEKACQLL 291
                G+S    + +++   + G     + +    +E     E   N++   VE A    
Sbjct: 213 -----GESEAKGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEAA---- 272

Query: 292 NPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
             +GS  S E+W   +SDG   +F+     S Q   FW
Sbjct: 273 --DGSLTSQEDWRSLESDG---LFDQSNSGSDQWWDFW 290

[Close]

BLAST of Carg15041 vs. TrEMBL
Match: tr|A0A0A7CB71|A0A0A7CB71_JATCU (Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 81/218 (37.16%), Postives = 115/218 (52.75%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 40  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 99

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL+EL+ +   EG    E  ET   + E    
Sbjct: 100 VLRANYNNLASRFETLKKEKQALAIRLQKLNELIEKPREEGECCGE-QETGVNSSE---- 159

Query: 232 FHDELGQSGVTYLNNNYNTDKRG---TENGEGDRGLEMTHSSEGRSNDISHAVEKACQLL 291
                G+S    + +++   + G     + +    +E     E   N++   VE A    
Sbjct: 160 -----GESEAKGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEAA---- 219

Query: 292 NPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
             +GS  S E+W   +SDG   +F+     S Q   FW
Sbjct: 220 --DGSLTSQEDWRSLESDG---LFDQSNSGSDQWWDFW 237

[Close]

BLAST of Carg15041 vs. TrEMBL
Match: tr|M5X028|M5X028_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 79/220 (35.91%), Postives = 116/220 (52.73%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLES+F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 43  FSDEQIRSLESLF-ESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 102

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL++L+ E P E            E +   +S
Sbjct: 103 ILRANYNNLASKFEALKKEKQALVIQVQKLNDLMRERPEE------------ERQSCGES 162

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEG-----DRGLEMTHSSEGRSNDISHAVEKACQ 291
            + +  +S    +  N+ + ++  + G G     D  ++  +       ++   VE A  
Sbjct: 163 DNGDAARSESDQVKLNHLSLEKSEQGGRGVLSDDDSSIKAEYFGLEDEPNLVSLVESA-- 222

Query: 292 LLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
               +GS  S+E+W   +S+G    F+    S  Q   FW
Sbjct: 223 ----DGSLTSTEDWGRLNSEG---FFDESISSDYQWWDFW 240

[Close]

BLAST of Carg15041 vs. TrEMBL
Match: tr|A0A1R3JJN8|A0A1R3JJN8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05603 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0


Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIR LESIF  S++KL+ RKK+QLA ELGLQPRQ+AIWFQNRRARWKSK++E ++R
Sbjct: 39  FSDEQIRLLESIF-ESETKLEPRKKLQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYR 98

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHE 208
           +LR NYDNLA                   LSEL+ E
Sbjct: 99  TLRDNYDNLASKFESLKNEKQALMLQLQNLSELLAE 133

[Close]

BLAST of Carg15041 vs. TrEMBL
Match: tr|A0A1R3JSI7|A0A1R3JSI7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14344 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-20
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 0


Query: 114 DEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSL 173
           DEQIR LESIF  S++KL+ RKK+QLA ELGLQPRQ+AIWFQNRRARWKSK++E ++R+L
Sbjct: 40  DEQIRLLESIF-ESETKLEPRKKLQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRAL 99

Query: 174 RANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHE 208
           RANYDNLA                   LSEL+ E
Sbjct: 100 RANYDNLASRFESLKNEKQALMLQLQNLSELLAE 132

The following BLAST results are available for this feature:

BLAST of Carg15041 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022923069.1	8.2e-106	99.07	homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata]	[more]
XP_022923068.1	8.2e-106	99.07	homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata]	[more]
XP_023553122.1	1.9e-102	97.22	homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_02...	[more]
XP_022984932.1	5.7e-99	94.88	homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita maxima]	[more]
XP_022984931.1	5.7e-99	94.88	homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita maxima]	[more]

BLAST of Carg15041 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46680.1	3.9e-17	69.49	homeobox 7	[more]
AT3G61890.1	3.6e-15	70.37	homeobox 12	[more]
AT2G18550.1	6.2e-15	56.06	homeobox protein 21	[more]
AT5G03790.1	8.1e-15	61.90	homeobox 51	[more]
AT4G36740.1	2.4e-14	51.47	homeobox protein 40	[more]

BLAST of Carg15041 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q01IK0\|HOX22_ORYSI	1.2e-18	60.87	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q7XUJ5\|HOX22_ORYSJ	1.2e-18	60.87	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|A2X7U1\|HOX24_ORYSI	1.4e-16	60.00	Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q6H6S3\|HOX24_ORYSJ	1.4e-16	60.00	Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|P46897\|ATHB7_ARATH	7.0e-16	69.49	Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7...	[more]

BLAST of Carg15041 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A067JWT5\|A0A067JWT5_JATCU	4.9e-22	37.16	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1	[more]
tr\|A0A0A7CB71\|A0A0A7CB71_JATCU	4.9e-22	37.16	Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1	[more]
tr\|M5X028\|M5X028_PRUPE	1.4e-21	35.91	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1	[more]
tr\|A0A1R3JJN8\|A0A1R3JJN8_COCAP	2.7e-20	60.42	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05603 PE=4 ...	[more]
tr\|A0A1R3JSI7\|A0A1R3JSI7_9ROSI	7.8e-20	60.64	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14344 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom
IPR000047	HTH_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg15041-RA	Carg15041-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 163..204
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 107..170 e-value: 3.4E-17 score: 63.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 243..275
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 254..269
None	No IPR available	PANTHER	PTHR24326:SF346	SUBFAMILY NOT NAMED	coord: 99..307
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 99..307
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 144..160 score: 58.02 coord: 135..144 score: 44.56
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 99..168 e-value: 7.6E-16 score: 68.6
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 109..162 e-value: 8.5E-17 score: 60.6
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 103..164 score: 17.167
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 109..165 e-value: 9.94518E-15 score: 66.8832
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 164..205 e-value: 7.1E-10 score: 38.8
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 139..162
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 109..167

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg15041	ClCG05G000530	Watermelon (Charleston Gray)	carwcgB0964
Carg15041	CSPI04G08250	Wild cucumber (PI 183967)	carcpiB1028
Carg15041	Cucsa.273360	Cucumber (Gy14) v1	carcgyB1108
Carg15041	CmaCh16G000240	Cucurbita maxima (Rimu)	carcmaB1366
Carg15041	CmaCh18G013380	Cucurbita maxima (Rimu)	carcmaB1368
Carg15041	CmaCh14G021320	Cucurbita maxima (Rimu)	carcmaB1364
Carg15041	CmoCh16G000280	Cucurbita moschata (Rifu)	carcmoB1326
Carg15041	CmoCh18G013710	Cucurbita moschata (Rifu)	carcmoB1328
Carg15041	Lsi07G003120	Bottle gourd (USVL1VR-Ls)	carlsiB905
Carg15041	CsaV3_4G008480	Cucumber (Chinese Long) v3	carcucB1034

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg15041	Carg20318	Silver-seed gourd	carcarB503

The following block(s) are covering this gene:


Gene	Organism	Block
Carg15041	Cucurbita pepo (Zucchini)	carcpeB1373
Carg15041	Cucurbita pepo (Zucchini)	carcpeB1376