CmaCh16G000240 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh16G000240
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionHD domain class transcription factor
LocationCma_Chr16 : 121192 .. 121617 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGACAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGATATGTTCAACTCCTAGGAGGAGGAGGAAGAAGAAAACCAACAACACGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACTGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGTAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGA

mRNA sequence

ATGGAGAGACAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGATATGTTCAACTCCTAGGAGGAGGAGGAAGAAGAAAACCAACAACACGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACTGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGTAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGA

Coding sequence (CDS)

ATGGAGAGACAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGATATGTTCAACTCCTAGGAGGAGGAGGAAGAAGAAAACCAACAACACGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACTGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGTAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGA

Protein sequence

MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPKFFFLLLKSFYC
Homology
[Close]
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 127.1 bits (318), Expect = 1.5e-28
Identity = 64/115 (55.65%), Postives = 91/115 (79.13%), Query Frame = 1 

Query: 16  AVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGL 75
           A+ S++   T ++ +K   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGL
Sbjct: 10  AMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGL 69

Query: 76  QPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           QPRQ+AIWFQN+R RWKSK++E  +  LR NYDNLASQF++L++EK +L+S++ +
Sbjct: 70  QPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQR 123

[Close]
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 3.7e-27
Identity = 61/111 (54.95%), Postives = 89/111 (80.18%), Query Frame = 1 

Query: 20  SQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQ 79
           S+I S     +KK   + N++RFS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ
Sbjct: 12  SEISSGMTMNKKKMKKSNNQKRFSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQ 71

Query: 80  IAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           +AIWFQN+R RWK+K++E  + +LRANY+NLASQF+ +++EK SL+S++ +
Sbjct: 72  VAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQR 121

[Close]
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 50/90 (55.56%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRRF++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+R RW+SK++E+
Sbjct: 74  KRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEH 133

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           ++ +LR+ YD L S+ ++L++EK +L  Q+
Sbjct: 134 DYAALRSKYDALHSRVESLKQEKLALTVQL 163

[Close]
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match: HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.2e-22
Identity = 50/90 (55.56%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRRF++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+R RW+SK++E+
Sbjct: 74  KRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEH 133

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           ++ +LR+ YD L S+ ++L++EK +L  Q+
Sbjct: 134 DYAALRSKYDALHSRVESLKQEKLALTVQL 163

[Close]
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match: HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=2 SV=2)

HSP 1 Score: 106.7 bits (265), Expect = 2.1e-22
Identity = 49/90 (54.44%), Postives = 76/90 (84.44%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRRF++EQ+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+R RW+SK++E+
Sbjct: 66  KRRFTEEQVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEH 125

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           ++ +LRA YD L ++ ++L++EK +L +QV
Sbjct: 126 DYAALRAQYDALHARVESLRQEKLALAAQV 155

[Close]
BLAST of CmaCh16G000240 vs. TrEMBL
Match: Q9XH73_PRUAR (Homeobox leucine zipper protein OS=Prunus armeniaca GN=HBLZP PE=2 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.1e-29
Identity = 75/130 (57.69%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           ME+ E     NF +   +     +  R++ K K    N+RRFSDEQIR LESIF  +DSK
Sbjct: 1   MEKTECSEAENFGSVTTSLEPQATAKRKKAKSK----NQRRFSDEQIRLLESIF-EADSK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ R+KVQ+A ELGLQPRQ+AIWFQNRR RWKSK++E +FR+LRA+YDNLAS+F++L+EE
Sbjct: 61  LEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEE 120

Query: 121 KNSLLSQVPK 131
           K SLL Q+ K
Sbjct: 121 KQSLLMQMQK 125

[Close]
BLAST of CmaCh16G000240 vs. TrEMBL
Match: G7J874_MEDTR (Homeobox associated leucine zipper protein OS=Medicago truncatula GN=MTR_3g092150 PE=4 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 4.8e-29
Identity = 75/135 (55.56%), Postives = 94/135 (69.63%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           M  +E  I   F+   V S     TP+  +KK     NKRRFSDEQIRSLE IF  S+SK
Sbjct: 1   MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIF-ESESK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ RKK+QLA +LGLQPRQ+AIWFQNRR RWKSK +E  +R L+  YDNLAS+F+ L+EE
Sbjct: 61  LEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEE 120

Query: 121 KNSLLSQVPKFFFLL 136
           K SL S+V K  +++
Sbjct: 121 KESLQSEVQKLSYMV 134

[Close]
BLAST of CmaCh16G000240 vs. TrEMBL
Match: M5XDH8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011221mg PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 1.1e-28
Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           ME+ E     NF +   +     +  R++ K K    N+RRFSDEQI  LESIF  +DSK
Sbjct: 1   MEKTECSEAENFGSVTTSLEPQATAKRKKNKSK----NQRRFSDEQIGLLESIF-EADSK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ R+KVQ+A ELGLQPRQ+AIWFQNRR RWKSK++E +FR+LRA+YDNLAS+F++L+EE
Sbjct: 61  LEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEE 120

Query: 121 KNSLLSQVPK 131
           K SLL Q+ K
Sbjct: 121 KQSLLMQMQK 125

[Close]
BLAST of CmaCh16G000240 vs. TrEMBL
Match: V4T2M4_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022365mg PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28
Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 1 

Query: 24  STPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIW 83
           ++P  +RKKK+   NKRRFSDEQIR LESIF S  +KL+ RKK+Q+ATELGLQPRQ+AIW
Sbjct: 11  ASPEAKRKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIW 70

Query: 84  FQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           FQN+R RWKSK++E+++  LRANYD+LAS F++L +EK SLL ++
Sbjct: 71  FQNKRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLEL 115

[Close]
BLAST of CmaCh16G000240 vs. TrEMBL
Match: M0ZH66_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000248 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 2.4e-28
Identity = 71/126 (56.35%), Postives = 98/126 (77.78%), Query Frame = 1 

Query: 10  PNFETAAVA-----SSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSR 69
           P+  TAA++     SS   S+    +KKK NN N RRFSDEQI+SLE++F  +++KL+ R
Sbjct: 9   PSSSTAALSAECFSSSSCFSSLSSSKKKKINNNNARRFSDEQIKSLETMF-ETETKLEPR 68

Query: 70  KKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSL 129
           KK+QLA ELGLQPRQ+AIWFQN+R RWKSK++E ++  L++NYDNLASQ+++L++EK SL
Sbjct: 69  KKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYSILKSNYDNLASQYESLKKEKQSL 128

Query: 130 LSQVPK 131
           L Q+ K
Sbjct: 129 LIQLQK 133

[Close]
BLAST of CmaCh16G000240 vs. TAIR10
Match: AT2G46680.1 (AT2G46680.1 homeobox 7)

HSP 1 Score: 127.1 bits (318), Expect = 8.6e-30
Identity = 64/115 (55.65%), Postives = 91/115 (79.13%), Query Frame = 1 

Query: 16  AVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGL 75
           A+ S++   T ++ +K   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGL
Sbjct: 10  AMMSAEPFLTMKKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGL 69

Query: 76  QPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           QPRQ+AIWFQN+R RWKSK++E  +  LR NYDNLASQF++L++EK +L+S++ +
Sbjct: 70  QPRQVAIWFQNKRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQR 123

[Close]
BLAST of CmaCh16G000240 vs. TAIR10
Match: AT3G61890.1 (AT3G61890.1 homeobox 12)

HSP 1 Score: 122.5 bits (306), Expect = 2.1e-28
Identity = 61/111 (54.95%), Postives = 89/111 (80.18%), Query Frame = 1 

Query: 20  SQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQ 79
           S+I S     +KK   + N++RFS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ
Sbjct: 12  SEISSGMTMNKKKMKKSNNQKRFSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQ 71

Query: 80  IAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           +AIWFQN+R RWK+K++E  + +LRANY+NLASQF+ +++EK SL+S++ +
Sbjct: 72  VAIWFQNKRARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQR 121

[Close]
BLAST of CmaCh16G000240 vs. TAIR10
Match: AT5G65310.1 (AT5G65310.1 homeobox protein 5)

HSP 1 Score: 92.4 bits (228), Expect = 2.3e-19
Identity = 46/90 (51.11%), Postives = 66/90 (73.33%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRR   EQ+++LE  F   D+KL+  +KV+LA ELGLQPRQ+AIWFQNRR RWK+K++E 
Sbjct: 73  KRRLGVEQVKALEKNF-EIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLER 132

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           ++  L++N+D L     +LQ + +SLL Q+
Sbjct: 133 DYGVLKSNFDALKRNRDSLQRDNDSLLGQI 161

[Close]
BLAST of CmaCh16G000240 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6)

HSP 1 Score: 92.0 bits (227), Expect = 3.1e-19
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRR S  Q+++LE  F   ++KL+  +KV+LA ELGLQPRQ+A+WFQNRR RWK+K++E 
Sbjct: 63  KRRLSINQVKALEKNF-ELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEK 122

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           ++  L+  YD+L   F +L+ +  SLL ++ K
Sbjct: 123 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISK 153

[Close]
BLAST of CmaCh16G000240 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18
Identity = 42/92 (45.65%), Postives = 66/92 (71.74%), Query Frame = 1 

Query: 39  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMEN 98
           KRR   +Q+++LE  F   ++KL+  +K +LA ELGLQPRQ+A+WFQNRR RWK+K++E 
Sbjct: 60  KRRLKVDQVKALEKNF-ELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEK 119

Query: 99  NFRSLRANYDNLASQFKTLQEEKNSLLSQVPK 131
           ++  L+  YD+L   F +L+ + +SLL ++ K
Sbjct: 120 DYGVLKGQYDSLRHNFDSLRRDNDSLLQEISK 150

[Close]
BLAST of CmaCh16G000240 vs. NCBI nr
Match: gi|5031277|gb|AAD38144.1|AF139497_1 (homeobox leucine zipper protein [Prunus armeniaca])

HSP 1 Score: 136.7 bits (343), Expect = 3.1e-29
Identity = 75/130 (57.69%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           ME+ E     NF +   +     +  R++ K K    N+RRFSDEQIR LESIF  +DSK
Sbjct: 1   MEKTECSEAENFGSVTTSLEPQATAKRKKAKSK----NQRRFSDEQIRLLESIF-EADSK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ R+KVQ+A ELGLQPRQ+AIWFQNRR RWKSK++E +FR+LRA+YDNLAS+F++L+EE
Sbjct: 61  LEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEE 120

Query: 121 KNSLLSQVPK 131
           K SLL Q+ K
Sbjct: 121 KQSLLMQMQK 125

[Close]
BLAST of CmaCh16G000240 vs. NCBI nr
Match: gi|922375994|ref|XP_003602321.2| (homeobox associated leucine zipper protein [Medicago truncatula])

HSP 1 Score: 135.6 bits (340), Expect = 6.8e-29
Identity = 75/135 (55.56%), Postives = 94/135 (69.63%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           M  +E  I   F+   V S     TP+  +KK     NKRRFSDEQIRSLE IF  S+SK
Sbjct: 1   MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIENKRRFSDEQIRSLECIF-ESESK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ RKK+QLA +LGLQPRQ+AIWFQNRR RWKSK +E  +R L+  YDNLAS+F+ L+EE
Sbjct: 61  LEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCLKEE 120

Query: 121 KNSLLSQVPKFFFLL 136
           K SL S+V K  +++
Sbjct: 121 KESLQSEVQKLSYMV 134

[Close]
BLAST of CmaCh16G000240 vs. NCBI nr
Match: gi|645257991|ref|XP_008234673.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Prunus mume])

HSP 1 Score: 135.6 bits (340), Expect = 6.8e-29
Identity = 74/130 (56.92%), Postives = 97/130 (74.62%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           ME+ E     NF +   +     +  R++ K K    N+RRF+DEQIR LESIF  +DSK
Sbjct: 1   MEKTECSEAQNFGSVTTSLEPQATAKRKKAKSK----NQRRFTDEQIRLLESIF-EADSK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ R+KVQ+A ELGLQPRQ+AIWFQNRR RWKSK++E +FR+LRA+YDNLAS+F++L+EE
Sbjct: 61  LEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEE 120

Query: 121 KNSLLSQVPK 131
           K SLL Q+ K
Sbjct: 121 KQSLLMQMEK 125

[Close]
BLAST of CmaCh16G000240 vs. NCBI nr
Match: gi|596005414|ref|XP_007218369.1| (hypothetical protein PRUPE_ppa011221mg [Prunus persica])

HSP 1 Score: 134.4 bits (337), Expect = 1.5e-28
Identity = 74/130 (56.92%), Postives = 96/130 (73.85%), Query Frame = 1 

Query: 1   MERQEYFILPNFETAAVASSQICSTPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSK 60
           ME+ E     NF +   +     +  R++ K K    N+RRFSDEQI  LESIF  +DSK
Sbjct: 1   MEKTECSEAENFGSVTTSLEPQATAKRKKNKSK----NQRRFSDEQIGLLESIF-EADSK 60

Query: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEE 120
           L+ R+KVQ+A ELGLQPRQ+AIWFQNRR RWKSK++E +FR+LRA+YDNLAS+F++L+EE
Sbjct: 61  LEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESLKEE 120

Query: 121 KNSLLSQVPK 131
           K SLL Q+ K
Sbjct: 121 KQSLLMQMQK 125

[Close]
BLAST of CmaCh16G000240 vs. NCBI nr
Match: gi|567897440|ref|XP_006441208.1| (hypothetical protein CICLE_v10022365mg [Citrus clementina])

HSP 1 Score: 133.3 bits (334), Expect = 3.4e-28
Identity = 67/105 (63.81%), Postives = 88/105 (83.81%), Query Frame = 1 

Query: 24  STPRRRRKKKTNNTNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIW 83
           ++P  +RKKK+   NKRRFSDEQIR LESIF S  +KL+ RKK+Q+ATELGLQPRQ+AIW
Sbjct: 11  ASPEAKRKKKSKMKNKRRFSDEQIRLLESIFESESTKLEPRKKMQVATELGLQPRQVAIW 70

Query: 84  FQNRRVRWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQV 129
           FQN+R RWKSK++E+++  LRANYD+LAS F++L +EK SLL ++
Sbjct: 71  FQNKRARWKSKQIEHDYAQLRANYDSLASGFESLIKEKESLLLEL 115

The following BLAST results are available for this feature:
BLAST of CmaCh16G000240 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ATHB7_ARATH1.5e-2855.65Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV... [more]
ATB12_ARATH3.7e-2754.95Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 ... [more]
HOX22_ORYSI1.2e-2255.56Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=... [more]
HOX22_ORYSJ1.2e-2255.56Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica GN=HOX22 P... [more]
HOX24_ORYSI2.1e-2254.44Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica GN=HOX24 PE=... [more]
BLAST of CmaCh16G000240 vs. TrEMBL
Match NameE-valueIdentityDescription
Q9XH73_PRUAR2.1e-2957.69Homeobox leucine zipper protein OS=Prunus armeniaca GN=HBLZP PE=2 SV=1[more]
G7J874_MEDTR4.8e-2955.56Homeobox associated leucine zipper protein OS=Medicago truncatula GN=MTR_3g09215... [more]
M5XDH8_PRUPE1.1e-2856.92Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011221mg PE=4 SV=1[more]
V4T2M4_9ROSI2.4e-2863.81Uncharacterized protein OS=Citrus clementina GN=CICLE_v10022365mg PE=4 SV=1[more]
M0ZH66_SOLTU2.4e-2856.35Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000248 PE=4 SV=1[more]
BLAST of CmaCh16G000240 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46680.18.6e-3055.65 homeobox 7[more]
AT3G61890.12.1e-2854.95 homeobox 12[more]
AT5G65310.12.3e-1951.11 homeobox protein 5[more]
AT2G22430.13.1e-1947.83 homeobox protein 6[more]
AT4G40060.11.2e-1845.65 homeobox protein 16[more]
BLAST of CmaCh16G000240 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|5031277|gb|AAD38144.1|AF139497_13.1e-2957.69homeobox leucine zipper protein [Prunus armeniaca][more]
gi|922375994|ref|XP_003602321.2|6.8e-2955.56homeobox associated leucine zipper protein [Medicago truncatula][more]
gi|645257991|ref|XP_008234673.1|6.8e-2956.92PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Prunus mume][more]
gi|596005414|ref|XP_007218369.1|1.5e-2856.92hypothetical protein PRUPE_ppa011221mg [Prunus persica][more]
gi|567897440|ref|XP_006441208.1|3.4e-2863.81hypothetical protein CICLE_v10022365mg [Citrus clementina][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000047HTH_motif
IPR001356Homeobox_dom
IPR003106Leu_zip_homeo
IPR009057Homeobox-like_sf
IPR017970Homeobox_CS
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005575 cellular_component
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh16G000240.1CmaCh16G000240.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 74..90
score: 9.2E-6coord: 65..74
score: 9.
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 38..92
score: 7.4
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 29..98
score: 3.3
IPR001356Homeobox domainPROFILEPS50071HOMEOBOX_2coord: 33..94
score: 17
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 94..128
score: 7.
IPR009057Homeodomain-likeGENE3DG3DSA:1.10.10.60coord: 41..92
score: 6.2
IPR009057Homeodomain-likeunknownSSF46689Homeodomain-likecoord: 24..95
score: 7.7
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 69..92
scor
NoneNo IPR availableunknownCoilCoilcoord: 93..127
scor
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 36..127
score: 5.0
NoneNo IPR availablePANTHERPTHR24326:SF122HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-12-RELATEDcoord: 36..127
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh16G000240Cucsa.273360Cucumber (Gy14) v1cgycmaB0760
CmaCh16G000240ClCG05G000530Watermelon (Charleston Gray)cmawcgB295
CmaCh16G000240CSPI04G08250Wild cucumber (PI 183967)cmacpiB344
CmaCh16G000240CmoCh18G013710Cucurbita moschata (Rifu)cmacmoB327
CmaCh16G000240CmoCh16G000280Cucurbita moschata (Rifu)cmacmoB322
CmaCh16G000240Lsi07G003120Bottle gourd (USVL1VR-Ls)cmalsiB330
CmaCh16G000240CsaV3_4G008480Cucumber (Chinese Long) v3cmacucB0395
CmaCh16G000240Carg20318Silver-seed gourdcarcmaB0752
CmaCh16G000240Carg15041Silver-seed gourdcarcmaB1366
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh16G000240CmaCh14G021320Cucurbita maxima (Rimu)cmacmaB243
CmaCh16G000240CmaCh18G013380Cucurbita maxima (Rimu)cmacmaB338
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh16G000240Cucumber (Chinese Long) v3cmacucB0402
CmaCh16G000240Cucurbita pepo (Zucchini)cmacpeB339
CmaCh16G000240Cucurbita pepo (Zucchini)cmacpeB344