CmoCh16G000280 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G000280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	HB transcription factor
Location	Cmo_Chr16 : 137218 .. 139128 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGTTAGCTAGGGGATAAGCATGCAGTGTAGTGCTTTTTGACACTAACCAAGCCTTTATAGCAAAAGCGTTTCAACAAGAAGGAAAAAATGCTGTAGAGGGTTGTGGTCTCCTTAGTTTTGAAGCTGAAAAGGGAAAATGGATGCAGATAAGCACTAGGGATGGACTGGAAAAAGCCACACGTTAGCGAACTCCATTGGTCTTCCATGCAGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTATATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTGCTGAGCATTTTCATCAGTTGATGAGTAAACAATATGCTGCCATTTGAAACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTGGCTAAACTTGAGGGGATTCCAAGTATACTAAAGATTGGCTCCTAAATATTGGTCTTATTACTACCAGGTGGAAGATTACCATCTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATTGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGGCGTAGTTGAATTACGAAATAAACAGATATAAGAACACTATAGGAAGTTCATCACTCGCCTGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTCGGTACGCAAGCTTTTGAAGGTGACACCCAATTGGGGTAATTCATGTCTATTTTTTATGCATGATGTAAAGATAGTGGACGGAGGGCACAAATGACACATCAAGGCTATTCCTTTACCCATAATAAAGAAGTGAATGTGATTGTCATCGTTCGACCAATCAGAAATAAGATTCCGCCCATCACCCATAGCTTTACCAAAATGAATTTTATGAAATTTGCAGTACTTAATGTAAAATATTCTTATTGTATTTGTTGTCCAAGTCTTTTGCCTTGAAGTTATTTAAGTGCGGGGATGAAGCCAAAAATGAGCTG

mRNA sequence

ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTGGCTAAACTTGAGGGGATTCCAAGTATACTAAAGATTGGCTCCTAAATATTGGTCTTATTACTACCAGGTGGAAGATTACCATCTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATTGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGGCGTAGTTGAATTACGAAATAAACAGATATAAGAACACTATAGGAAGTTCATCACTCGCCTGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTCGGTACGCAAGCTTTTGAAGGTGACACCCAATTGGGGTAATTCATGTCTATTTTTTATGCATGATGTAAAGATAGTGGACGGAGGGCACAAATGACACATCAAGGCTATTCCTTTACCCATAATAAAGAAGTGAATGTGATTGTCATCGTTCGACCAATCAGAAATAAGATTCCGCCCATCACCCATAGCTTTACCAAAATGAATTTTATGAAATTTGCAGTACTTAATGTAAAATATTCTTATTGTATTTGTTGTCCAAGTCTTTTGCCTTGAAGTTATTTAAGTGCGGGGATGAAGCCAAAAATGAGCTG

Coding sequence (CDS)

ATGTGTGGCTATGTAAAAGAAAAGGTGTTGAATGCATTCCAGGAGAATGAATGGACAAAAGTTATGGAGAGAGAGGAGTATTTCATACTACCAAATTTTGAGACCGCAGCAGTAGCCTCTTCACAGACATGTTCAACTCCTAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATCTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAATGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACAGAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCGTGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA

Homology

[Close]

BLAST of CmoCh16G000280 vs. Swiss-Prot
Match: ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 132.1 bits (331), Expect = 9.4e-30
Identity = 92/229 (40.17%), Postives = 130/229 (56.77%), Query Frame = 1


Query: 51  RRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQN 110
           ++ +K   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN
Sbjct: 21  KKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQN 80

Query: 111 RRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPRE----- 170
           +RARWKSK++E  +  LR NYDNLASQF++L++EK +L+S+LQ+L E   +  +E     
Sbjct: 81  KRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQC 140

Query: 171 -----------GHYSNEIAETIYETKEK---PQSFHDELGQNGVTYLNNNYNTDKRGTEN 230
                       H+ +E  E      E+        D+ G +GV   +++Y  D  G  N
Sbjct: 141 SGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHGVMCDHHDYEDDDNGYSN 200

Query: 231 GEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSD 261
              +   E     E   +   + VE A   L       SS++W GF SD
Sbjct: 201 ---NIKREYFGGFEEEPDHLMNIVEPADSCLT------SSDDWRGFKSD 239

[Close]

BLAST of CmoCh16G000280 vs. Swiss-Prot
Match: ATB12_ARATH (Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.1e-29
Identity = 85/218 (38.99%), Postives = 133/218 (61.01%), Query Frame = 1


Query: 52  RRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNR 111
           +++ KK+NN  ++RFS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ+AIWFQN+
Sbjct: 22  KKKMKKSNN--QKRFSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQVAIWFQNK 81

Query: 112 RARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNE 171
           RARWK+K++E  + +LRANY+NLASQF+ +++EK SL+S+LQ+L+E +     E H    
Sbjct: 82  RARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKH---- 141

Query: 172 IAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDR 231
                          H+  G  G+   ++  + + +    G  D+G  + +  +  +N +
Sbjct: 142 ---------------HECCGDQGLALSSSTESHNGKSEPEGRLDQGSVLCNDGDYNNNIK 201

Query: 232 SH----AVEKACQLLN-----PNGSFESSENWCGFDSD 261
           +       E   +L+N      +    SSENW GF+SD
Sbjct: 202 TEYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSD 217

[Close]

BLAST of CmoCh16G000280 vs. Swiss-Prot
Match: HOX6_ORYSJ (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=2 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-24
Identity = 60/112 (53.57%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           K+RFS+EQI+SLES+F ++ +KL+ R+K+QLA ELGLQPRQ+AIWFQN+RARWKSK++E 
Sbjct: 31  KKRFSEEQIKSLESMF-ATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 90

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAE 175
            + +LR +YD L   +++L++EK +L+ QL+KL+E++ E PR G Y +   +
Sbjct: 91  EYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQE-PR-GKYGDNAGD 139

[Close]

BLAST of CmoCh16G000280 vs. Swiss-Prot
Match: HOX6_ORYSI (Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 SV=2)

HSP 1 Score: 114.0 bits (284), Expect = 2.7e-24
Identity = 60/112 (53.57%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           K+RFS+EQI+SLES+F ++ +KL+ R+K+QLA ELGLQPRQ+AIWFQN+RARWKSK++E 
Sbjct: 31  KKRFSEEQIKSLESMF-ATQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLER 90

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAE 175
            + +LR +YD L   +++L++EK +L+ QL+KL+E++ E PR G Y +   +
Sbjct: 91  EYSALRDDYDALLCSYESLKKEKLALIKQLEKLAEMLQE-PR-GKYGDNAGD 139

[Close]

BLAST of CmoCh16G000280 vs. Swiss-Prot
Match: HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=2 SV=2)

HSP 1 Score: 112.1 bits (279), Expect = 1.0e-23
Identity = 60/113 (53.10%), Postives = 87/113 (76.99%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           KRRF++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+
Sbjct: 74  KRRFTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEH 133

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAET 176
           ++ +LR+ YD L S+ ++L++EK +L  QL +L E + E  RE    N  A T
Sbjct: 134 DYAALRSKYDALHSRVESLKQEKLALTVQLHELRERLRE--REERSGNGGAAT 184

[Close]

BLAST of CmoCh16G000280 vs. TrEMBL
Match: G7J874_MEDTR (Homeobox associated leucine zipper protein OS=Medicago truncatula GN=MTR_3g092150 PE=4 SV=2)

HSP 1 Score: 142.5 bits (358), Expect = 7.8e-31
Identity = 114/269 (42.38%), Postives = 147/269 (54.65%), Query Frame = 1


Query: 22  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 81
           M  EE  I   F+   V S     TP+  +++ KK  N   KRRFSDEQIRSLE IF  S
Sbjct: 1   MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIEN---KRRFSDEQIRSLECIF-ES 60

Query: 82  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 141
           +SKL+ RKK+QLA +LGLQPRQ+AIWFQNRRARWKSK +E  +R L+  YDNLAS+F+ L
Sbjct: 61  ESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCL 120

Query: 142 QEEKNSLLSQLQKLSELV---HEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYL 201
           +EEK SL S++QKLS +V   H+G RE                K  S  D   +NG  Y 
Sbjct: 121 KEEKESLQSEVQKLSYMVETSHDGGREA---------------KENSTEDGGSRNG--YN 180

Query: 202 NNNY-NTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVE-KACQLLNPNGSFE-----SS 261
           N+ +  T +R +  G  D+ +  +     RS   +  VE +  QLL  +   E     + 
Sbjct: 181 NSRFEETKQRFSNEGLEDKVVIYSDDQNERSTTWTEKVEDRGNQLLRNDDHAEIPLTTTL 240

Query: 262 ENWCGFDSDGGGIIFEYQPCSSLQELSFW 281
           E W   D  G       Q C+S Q L FW
Sbjct: 241 EKWYNVDPCG----MLDQSCNSSQWLDFW 244

[Close]

BLAST of CmoCh16G000280 vs. TrEMBL
Match: A0A067JWT5_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14207 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 7.8e-31
Identity = 106/263 (40.30%), Postives = 148/263 (56.27%), Query Frame = 1


Query: 23  EREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSD 82
           E E Y    + E    A     ST  RR++ +       NKRRFSDEQI+SLE++F  S+
Sbjct: 57  EEEVYSPCASAEDLFTAMDTALSTTSRRKKTK-------NKRRFSDEQIKSLETMF-ESE 116

Query: 83  SKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQ 142
           S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++  LRANY+NLAS+F+TL+
Sbjct: 117 SRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSVLRANYNNLASRFETLK 176

Query: 143 EEKNSLLSQLQKLSELVHEGPRE-----GHYSNEIAETIYETKEKPQSFHDELGQNGVTY 202
           +EK +L  QLQKL+EL+ E PRE     G     +  +  E++ K      E  +NG+  
Sbjct: 177 KEKQALAIQLQKLNELI-EKPREEGECCGEQETGVNSSEGESEAKGVISSFERSRNGLGV 236

Query: 203 LNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGF 262
            ++  ++ K           +E     E   N+    VE A      +GS  S E+W   
Sbjct: 237 ASDEDSSIK-----------VEYFGLEEEPDNNLISMVEAA------DGSLTSQEDWRSL 290

Query: 263 DSDGGGIIFEYQPCSSLQELSFW 281
           +SDG   +F+     S Q   FW
Sbjct: 297 ESDG---LFDQSNSGSDQWWDFW 290

[Close]

BLAST of CmoCh16G000280 vs. TrEMBL
Match: M5XDH8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011221mg PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 107/259 (41.31%), Postives = 147/259 (56.76%), Query Frame = 1


Query: 22  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 81
           ME+ E     NF      S  T   P+   +R+K K+ N  +RRFSDEQI  LESIF  +
Sbjct: 1   MEKTECSEAENF-----GSVTTSLEPQATAKRKKNKSKN--QRRFSDEQIGLLESIF-EA 60

Query: 82  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 141
           DSKL+ R+KVQ+A ELGLQPRQ+AIWFQNRRARWKSK++E +FR+LRA+YDNLAS+F++L
Sbjct: 61  DSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESL 120

Query: 142 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 201
           +EEK SLL Q+QKL+E+V + P +G   N +A+             +EL   GV      
Sbjct: 121 KEEKQSLLMQMQKLNEVVGK-PSQGLEGNIMAD--------GSRLDEELEPRGV------ 180

Query: 202 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 261
             + K  T N  G  G E               + +   + + + S  S ++W  FD   
Sbjct: 181 IQSHKNNTSNDVGCHGDE---------------IHELLSVAHVDASSLSPQDWHRFDP-- 218

Query: 262 GGIIFEYQPCSSLQELSFW 281
             I+F+    +S   L+FW
Sbjct: 241 -SILFDPSRFTSSHWLNFW 218

[Close]

BLAST of CmoCh16G000280 vs. TrEMBL
Match: W9QLX9_9ROSA (Homeobox-leucine zipper protein ATHB-7 OS=Morus notabilis GN=L484_001654 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.3e-30
Identity = 101/234 (43.16%), Postives = 137/234 (58.55%), Query Frame = 1


Query: 51  RRRRKKKTNNMNK---RRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIW 110
           +++R  K NNM++   RRFSDEQIR LES+F  S++KL+ RKKVQLA ELGLQPRQ+AIW
Sbjct: 11  KKKRSNKNNNMDRNHQRRFSDEQIRLLESMF-ESETKLEPRKKVQLARELGLQPRQVAIW 70

Query: 111 FQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGH 170
           FQNRRARWKSK++E +F +LRA Y++LASQF++L++EK SL+ QL+KL+EL+      G+
Sbjct: 71  FQNRRARWKSKQIEQDFTTLRAQYESLASQFESLKQEKQSLILQLEKLNELLGSSSTCGN 130

Query: 171 YSNEIAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGR 230
            +N  +E          SF  E  +N +  +      D      GE           EG 
Sbjct: 131 VTNSKSEV-------KDSFLQEGLENDIGAMQLQPRDDNTNKNVGE--------LKQEGI 190

Query: 231 SNDRSHAVEKACQLLNPNGSFESSENWC-GFDSDGGGIIFEYQPCSSLQELSFW 281
               S+ ++   Q L    S  S E WC  FD      +F+ QP    Q L+FW
Sbjct: 191 G---SYELQNTIQELGDRASLGSLETWCRSFD------VFD-QPRGCSQWLNFW 218

[Close]

BLAST of CmoCh16G000280 vs. TrEMBL
Match: A0A0S3RDW7_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G164300 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 3.0e-30
Identity = 101/245 (41.22%), Postives = 138/245 (56.33%), Query Frame = 1


Query: 54  RKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRA 113
           RKK     NKRRFSDEQIRSLE IF  ++SKL+ RKK+QLA +LGLQPRQ+AIWFQNRRA
Sbjct: 26  RKKNKKIENKRRFSDEQIRSLECIF-ETESKLEPRKKMQLARDLGLQPRQVAIWFQNRRA 85

Query: 114 RWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELV---HEGPREGHYSN 173
           RWKSK +E  +R L+  YDNLAS+F++L++EK SL  +LQKLS+LV   H+G RE   + 
Sbjct: 86  RWKSKRIEQEYRKLKDEYDNLASRFESLKKEKESLQVELQKLSDLVVSSHDGGREDKSAK 145

Query: 174 E---------IAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMT 233
           E            + ++ + KP+  ++ L +    Y ++        +E  E D+G ++ 
Sbjct: 146 EHSIEDGGSGSGYSSWKPEAKPRFSNEGLEERVGVYSDDQNENSIMRSEKSE-DKGHQLL 205

Query: 234 HSSEGRSNDRSHA------VEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQ 281
                R +D  HA      +EK    ++PNG  +                   Q CSS Q
Sbjct: 206 -----RMDDNDHAEMPLASLEKWYSSVDPNGILD-------------------QSCSSSQ 244

[Close]

BLAST of CmoCh16G000280 vs. TAIR10
Match: AT2G46680.1 (AT2G46680.1 homeobox 7)

HSP 1 Score: 132.1 bits (331), Expect = 5.3e-31
Identity = 92/229 (40.17%), Postives = 130/229 (56.77%), Query Frame = 1


Query: 51  RRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQN 110
           ++ +K   N  N+RRFSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN
Sbjct: 21  KKMKKSNHNKNNQRRFSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQN 80

Query: 111 RRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPRE----- 170
           +RARWKSK++E  +  LR NYDNLASQF++L++EK +L+S+LQ+L E   +  +E     
Sbjct: 81  KRARWKSKQLETEYNILRQNYDNLASQFESLKKEKQALVSELQRLKEATQKKTQEEERQC 140

Query: 171 -----------GHYSNEIAETIYETKEK---PQSFHDELGQNGVTYLNNNYNTDKRGTEN 230
                       H+ +E  E      E+        D+ G +GV   +++Y  D  G  N
Sbjct: 141 SGDQAVVALSSTHHESENEENRRRKPEEVRPEMEMKDDKGHHGVMCDHHDYEDDDNGYSN 200

Query: 231 GEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSD 261
              +   E     E   +   + VE A   L       SS++W GF SD
Sbjct: 201 ---NIKREYFGGFEEEPDHLMNIVEPADSCLT------SSDDWRGFKSD 239

[Close]

BLAST of CmoCh16G000280 vs. TAIR10
Match: AT3G61890.1 (AT3G61890.1 homeobox 12)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-30
Identity = 85/218 (38.99%), Postives = 133/218 (61.01%), Query Frame = 1


Query: 52  RRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNR 111
           +++ KK+NN  ++RFS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ+AIWFQN+
Sbjct: 22  KKKMKKSNN--QKRFSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQVAIWFQNK 81

Query: 112 RARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNE 171
           RARWK+K++E  + +LRANY+NLASQF+ +++EK SL+S+LQ+L+E +     E H    
Sbjct: 82  RARWKTKQLEKEYNTLRANYNNLASQFEIMKKEKQSLVSELQRLNEEMQRPKEEKH---- 141

Query: 172 IAETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDR 231
                          H+  G  G+   ++  + + +    G  D+G  + +  +  +N +
Sbjct: 142 ---------------HECCGDQGLALSSSTESHNGKSEPEGRLDQGSVLCNDGDYNNNIK 201

Query: 232 SH----AVEKACQLLN-----PNGSFESSENWCGFDSD 261
           +       E   +L+N      +    SSENW GF+SD
Sbjct: 202 TEYFGFEEETDHELMNIVEKADDSCLTSSENWGGFNSD 217

[Close]

BLAST of CmoCh16G000280 vs. TAIR10
Match: AT2G22430.1 (AT2G22430.1 homeobox protein 6)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 48/103 (46.60%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           KRR S  Q+++LE  F   ++KL+  +KV+LA ELGLQPRQ+A+WFQNRRARWK+K++E 
Sbjct: 63  KRRLSINQVKALEKNF-ELENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLEK 122

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPRE 166
           ++  L+  YD+L   F +L+ +  SLL ++ KL   ++ G  E
Sbjct: 123 DYGVLKTQYDSLRHNFDSLRRDNESLLQEISKLKTKLNGGGGE 164

[Close]

BLAST of CmoCh16G000280 vs. TAIR10
Match: AT5G65310.1 (AT5G65310.1 homeobox protein 5)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-19
Identity = 48/93 (51.61%), Postives = 70/93 (75.27%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           KRR   EQ+++LE  F   D+KL+  +KV+LA ELGLQPRQ+AIWFQNRRARWK+K++E 
Sbjct: 73  KRRLGVEQVKALEKNF-EIDNKLEPERKVKLAQELGLQPRQVAIWFQNRRARWKTKQLER 132

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKL 156
           ++  L++N+D L     +LQ + +SLL Q+++L
Sbjct: 133 DYGVLKSNFDALKRNRDSLQRDNDSLLGQIKEL 164

[Close]

BLAST of CmoCh16G000280 vs. TAIR10
Match: AT4G40060.1 (AT4G40060.1 homeobox protein 16)

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-19
Identity = 48/116 (41.38%), Postives = 78/116 (67.24%), Query Frame = 1


Query: 63  KRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMEN 122
           KRR   +Q+++LE  F   ++KL+  +K +LA ELGLQPRQ+A+WFQNRRARWK+K++E 
Sbjct: 60  KRRLKVDQVKALEKNF-ELENKLEPERKTKLAQELGLQPRQVAVWFQNRRARWKTKQLEK 119

Query: 123 NFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYE 179
           ++  L+  YD+L   F +L+ + +SLL ++ K+   V+ G  + + +  I E + E
Sbjct: 120 DYGVLKGQYDSLRHNFDSLRRDNDSLLQEISKIKAKVN-GEEDNNNNKAITEGVKE 173

[Close]

BLAST of CmoCh16G000280 vs. NCBI nr
Match: gi|449439053|ref|XP_004137302.1| (PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Cucumis sativus])

HSP 1 Score: 222.2 bits (565), Expect = 1.1e-54
Identity = 133/222 (59.91%), Postives = 167/222 (75.23%), Query Frame = 1


Query: 61  MNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEM 120
           MNKRRFSDEQI++LE+I+Y ++SKL+SR+ ++LAT+LGLQP+QI IWFQN+RARWKSKE 
Sbjct: 1   MNKRRFSDEQIKTLEAIYYLTESKLNSRQVIKLATKLGLQPQQITIWFQNKRARWKSKEK 60

Query: 121 ENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSN-EIAETIYET 180
           + NF+SLRA  D+LASQF+TLQEE NSLLSQLQKL+ L  +GP EG      + +T +ET
Sbjct: 61  QENFKSLRAKCDDLASQFETLQEENNSLLSQLQKLTVL--QGPCEGAIIRMTLKKTTHET 120

Query: 181 KEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKAC 240
            EKP++    L Q    Y N+NYNT  +    GEG+  L+MTH  EGRS DR   +EK  
Sbjct: 121 HEKPKTLPHALEQ---MYSNDNYNT--KCLVIGEGE--LQMTHLLEGRS-DRICHIEK-- 180

Query: 241 QLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 282
           QLLNPNGSFE+S+ WC F +DGG  ++EYQ CSSLQ  SFWG
Sbjct: 181 QLLNPNGSFETSDTWCIFYADGG--VYEYQSCSSLQGQSFWG 208

[Close]

BLAST of CmoCh16G000280 vs. NCBI nr
Match: gi|645257991|ref|XP_008234673.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Prunus mume])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 107/259 (41.31%), Postives = 146/259 (56.37%), Query Frame = 1


Query: 22  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 81
           ME+ E     NF      S  T   P+   +R+K K+ N  +RRF+DEQIR LESIF  +
Sbjct: 1   MEKTECSEAQNF-----GSVTTSLEPQATAKRKKAKSKN--QRRFTDEQIRLLESIF-EA 60

Query: 82  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 141
           DSKL+ R+KVQ+A ELGLQPRQ+AIWFQNRRARWKSK++E +FR+LRA+YDNLAS+F++L
Sbjct: 61  DSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFRTLRADYDNLASRFESL 120

Query: 142 QEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYLNNN 201
           +EEK SLL Q++KL+ELV + P +G   N +A+             +EL   GV   + N
Sbjct: 121 KEEKQSLLMQMEKLNELVGK-PSQGLEGNIMAD--------GSRLQEELAPRGVIQSHKN 180

Query: 202 YNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGFDSDG 261
             ++  G    E    L M H                      + S  S ++W  FD   
Sbjct: 181 NTSNDVGCHGDEIHELLSMAH---------------------VDASSLSPQDWHRFDP-- 218

Query: 262 GGIIFEYQPCSSLQELSFW 281
             I+F+    +S   L+FW
Sbjct: 241 -SILFDQSRFTSSHWLNFW 218

[Close]

BLAST of CmoCh16G000280 vs. NCBI nr
Match: gi|596005414|ref|XP_007218369.1| (hypothetical protein PRUPE_ppa011221mg [Prunus persica])

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 98/227 (43.17%), Postives = 136/227 (59.91%), Query Frame = 1


Query: 54  RKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRA 113
           ++KK  + N+RRFSDEQI  LESIF  +DSKL+ R+KVQ+A ELGLQPRQ+AIWFQNRRA
Sbjct: 26  KRKKNKSKNQRRFSDEQIGLLESIF-EADSKLEPRRKVQVARELGLQPRQVAIWFQNRRA 85

Query: 114 RWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIA 173
           RWKSK++E +FR+LRA+YDNLAS+F++L+EEK SLL Q+QKL+E+V + P +G   N +A
Sbjct: 86  RWKSKQIEQDFRTLRADYDNLASRFESLKEEKQSLLMQMQKLNEVVGK-PSQGLEGNIMA 145

Query: 174 ETIYETKEKPQSFHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSH 233
           +             +EL   GV        + K  T N  G  G E              
Sbjct: 146 D--------GSRLDEELEPRGV------IQSHKNNTSNDVGCHGDE-------------- 205

Query: 234 AVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 281
            + +   + + + S  S ++W  FD     I+F+    +S   L+FW
Sbjct: 206 -IHELLSVAHVDASSLSPQDWHRFDP---SILFDPSRFTSSHWLNFW 218

[Close]

BLAST of CmoCh16G000280 vs. NCBI nr
Match: gi|802694274|ref|XP_012083130.1| (PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Jatropha curcas])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 106/263 (40.30%), Postives = 148/263 (56.27%), Query Frame = 1


Query: 23  EREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSD 82
           E E Y    + E    A     ST  RR++ +       NKRRFSDEQI+SLE++F  S+
Sbjct: 57  EEEVYSPCASAEDLFTAMDTALSTTSRRKKTK-------NKRRFSDEQIKSLETMF-ESE 116

Query: 83  SKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQ 142
           S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++  LRANY+NLAS+F+TL+
Sbjct: 117 SRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYSVLRANYNNLASRFETLK 176

Query: 143 EEKNSLLSQLQKLSELVHEGPRE-----GHYSNEIAETIYETKEKPQSFHDELGQNGVTY 202
           +EK +L  QLQKL+EL+ E PRE     G     +  +  E++ K      E  +NG+  
Sbjct: 177 KEKQALAIQLQKLNELI-EKPREEGECCGEQETGVNSSEGESEAKGVISSFERSRNGLGV 236

Query: 203 LNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPNGSFESSENWCGF 262
            ++  ++ K           +E     E   N+    VE A      +GS  S E+W   
Sbjct: 237 ASDEDSSIK-----------VEYFGLEEEPDNNLISMVEAA------DGSLTSQEDWRSL 290

Query: 263 DSDGGGIIFEYQPCSSLQELSFW 281
           +SDG   +F+     S Q   FW
Sbjct: 297 ESDG---LFDQSNSGSDQWWDFW 290

[Close]

BLAST of CmoCh16G000280 vs. NCBI nr
Match: gi|922375994|ref|XP_003602321.2| (homeobox associated leucine zipper protein [Medicago truncatula])

HSP 1 Score: 142.5 bits (358), Expect = 1.1e-30
Identity = 114/269 (42.38%), Postives = 147/269 (54.65%), Query Frame = 1


Query: 22  MEREEYFILPNFETAAVASSQTCSTPRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSS 81
           M  EE  I   F+   V S     TP+  +++ KK  N   KRRFSDEQIRSLE IF  S
Sbjct: 1   MMEEEENIHEGFKGKNVESMSCLETPQNSKKKNKKIEN---KRRFSDEQIRSLECIF-ES 60

Query: 82  DSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTL 141
           +SKL+ RKK+QLA +LGLQPRQ+AIWFQNRRARWKSK +E  +R L+  YDNLAS+F+ L
Sbjct: 61  ESKLEPRKKMQLARDLGLQPRQVAIWFQNRRARWKSKRIEQEYRKLKDEYDNLASKFQCL 120

Query: 142 QEEKNSLLSQLQKLSELV---HEGPREGHYSNEIAETIYETKEKPQSFHDELGQNGVTYL 201
           +EEK SL S++QKLS +V   H+G RE                K  S  D   +NG  Y 
Sbjct: 121 KEEKESLQSEVQKLSYMVETSHDGGREA---------------KENSTEDGGSRNG--YN 180

Query: 202 NNNY-NTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVE-KACQLLNPNGSFE-----SS 261
           N+ +  T +R +  G  D+ +  +     RS   +  VE +  QLL  +   E     + 
Sbjct: 181 NSRFEETKQRFSNEGLEDKVVIYSDDQNERSTTWTEKVEDRGNQLLRNDDHAEIPLTTTL 240

Query: 262 ENWCGFDSDGGGIIFEYQPCSSLQELSFW 281
           E W   D  G       Q C+S Q L FW
Sbjct: 241 EKWYNVDPCG----MLDQSCNSSQWLDFW 244

The following BLAST results are available for this feature:

BLAST of CmoCh16G000280 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATHB7_ARATH	9.4e-30	40.17	Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana GN=ATHB-7 PE=1 SV...	[more]
ATB12_ARATH	2.1e-29	38.99	Homeobox-leucine zipper protein ATHB-12 OS=Arabidopsis thaliana GN=ATHB-12 PE=1 ...	[more]
HOX6_ORYSJ	2.7e-24	53.57	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. japonica GN=HOX6 PE=...	[more]
HOX6_ORYSI	2.7e-24	53.57	Homeobox-leucine zipper protein HOX6 OS=Oryza sativa subsp. indica GN=HOX6 PE=2 ...	[more]
HOX22_ORYSI	1.0e-23	53.10	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica GN=HOX22 PE=...	[more]

BLAST of CmoCh16G000280 vs. TrEMBL


Match Name	E-value	Identity	Description
G7J874_MEDTR	7.8e-31	42.38	Homeobox associated leucine zipper protein OS=Medicago truncatula GN=MTR_3g09215...	[more]
A0A067JWT5_JATCU	7.8e-31	40.30	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14207 PE=4 SV=1	[more]
M5XDH8_PRUPE	1.3e-30	41.31	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011221mg PE=4 SV=1	[more]
W9QLX9_9ROSA	2.3e-30	43.16	Homeobox-leucine zipper protein ATHB-7 OS=Morus notabilis GN=L484_001654 PE=4 SV...	[more]
A0A0S3RDW7_PHAAN	3.0e-30	41.22	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G164300 PE=...	[more]

BLAST of CmoCh16G000280 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46680.1	5.3e-31	40.17	homeobox 7	[more]
AT3G61890.1	1.2e-30	38.99	homeobox 12	[more]
AT2G22430.1	2.1e-19	46.60	homeobox protein 6	[more]
AT5G65310.1	2.1e-19	51.61	homeobox protein 5	[more]
AT4G40060.1	3.6e-19	41.38	homeobox protein 16	[more]

BLAST of CmoCh16G000280 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439053\|ref\|XP_004137302.1\|	1.1e-54	59.91	PREDICTED: homeobox-leucine zipper protein ATHB-7-like [Cucumis sativus]	[more]
gi\|645257991\|ref\|XP_008234673.1\|	3.8e-31	41.31	PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Prunus mume]	[more]
gi\|596005414\|ref\|XP_007218369.1\|	3.8e-31	43.17	hypothetical protein PRUPE_ppa011221mg [Prunus persica]	[more]
gi\|802694274\|ref\|XP_012083130.1\|	1.1e-30	40.30	PREDICTED: homeobox-leucine zipper protein ATHB-12-like [Jatropha curcas]	[more]
gi\|922375994\|ref\|XP_003602321.2\|	1.1e-30	42.38	homeobox associated leucine zipper protein [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000047	HTH_motif
IPR001356	Homeobox_dom
IPR003106	Leu_zip_homeo
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0043565	sequence-specific DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh16G000280.1	CmoCh16G000280.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 89..98 score: 1.1E-5coord: 98..114 score: 1.
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 63..116 score: 6.5
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 53..122 score: 7.6
IPR001356	Homeobox domain	PROFILE	PS50071	HOMEOBOX_2	coord: 57..118 score: 17
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 118..159 score: 4.6
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 65..116 score: 5.2
IPR009057	Homeodomain-like	unknown	SSF46689	Homeodomain-like	coord: 63..121 score: 3.85
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 93..116 scor
None	No IPR available	unknown	Coil	Coil	coord: 117..158 scor
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 48..178 score: 5.1E-50coord: 17..23 score: 5.1
None	No IPR available	PANTHER	PTHR24326:SF122	HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-12-RELATED	coord: 17..23 score: 5.1E-50coord: 48..178 score: 5.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh16G000280	Cucsa.273360	Cucumber (Gy14) v1	cgycmoB0751
CmoCh16G000280	CmaCh16G000240	Cucurbita maxima (Rimu)	cmacmoB322
CmoCh16G000280	CmaCh18G013380	Cucurbita maxima (Rimu)	cmacmoB405
CmoCh16G000280	CSPI04G08250	Wild cucumber (PI 183967)	cmocpiB335
CmoCh16G000280	Lsi07G003120	Bottle gourd (USVL1VR-Ls)	cmolsiB319
CmoCh16G000280	CsaV3_3G007750	Cucumber (Chinese Long) v3	cmocucB0374
CmoCh16G000280	CsaV3_4G008480	Cucumber (Chinese Long) v3	cmocucB0392
CmoCh16G000280	Carg20318	Silver-seed gourd	carcmoB0730
CmoCh16G000280	Carg15041	Silver-seed gourd	carcmoB1326

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh16G000280	CmoCh18G013710	Cucurbita moschata (Rifu)	cmocmoB275

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh16G000280	Cucurbita pepo (Zucchini)	cmocpeB303
CmoCh16G000280	Cucurbita pepo (Zucchini)	cmocpeB307
CmoCh16G000280	Cucumber (Chinese Long) v3	cmocucB0398