Carg20318 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20318
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Homeobox leucine zipper protein
Location	Cucurbita_argyrosperma_scaffold_178 : 60329 .. 61148 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGGTACCATAAACTCCTTTTTCCATTTTCATCAGTTCATCATGAACTGTAGTGGTAAGCACTCCCCCGGTATTTGAAACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGAGACGATTCCAGAGAAAACTAGGCTACATCCACTTAG

mRNA sequence

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGAGACGATTCCAGAGAAAACTAGGCTACATCCACTTAG

Coding sequence (CDS)

ATGGAGAGACAGGAGTACATCAAAATACAAAGTTTGGAAGTAGCCTCTTCGCAGACATGTCCAACTCCTAGGAGGAAGAAGAAGAAGAAGAAGAAGAGCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTATTCATCGGATTCAAAGCTTGATTCGAGGAAGAAGGTGCAGCTGGCAGCCGAGTTGGGACTCCAACCTCGCCAGATTTCTATATGGTTTCAGAATAGAAGAGCAAGATGGAAGTCGAAGCAGATGGAGAACGATTTCAGGAGCCTCAGAGCTAGTTATGATAATCTAGCGTCTCAGTTTAGAACTTTACAGGAAGAGAACAACTCCTTGCTCTCACAGTTGCAAAAGTTAGGCGAGCTTGTTCAAGAAGAACCAGGTGAGGGATGTTATTCCACTAATTTTGGAAAAAACGCTGATGAGAATCAAGCAAAGCTAGAAATCTTAGAAGATGAACCGGAACAGAATGGAGTCACGCATTTGAACAACAATTCAAAGACAGAGAATGGAGGAGGACATCAAGCGACCCATTTGTTGGAAGGCAGAAGCAACGGCAATAGCCACAGTGAGGAGCAAGTATGGTGCGATTTTGAGTCGGATGGTGGTGTCATCTTTGAATATCAGCCGTGTAGCAGTTTGCACTTGCAGGGGCTAAGTTTCTGGGGATGA

Protein sequence

MERQEYIKIQSLEVASSQTCPTPRRKKKKKKKSNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG

Homology

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_022945963.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita moschata])

HSP 1 Score: 380.9 bits (977), Expect = 3.0e-102
Identity = 231/234 (98.72%), Postives = 233/234 (99.57%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPTXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSKL 60
           MER EYIKIQ+LEVASSQTCPTXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSKL
Sbjct: 1   MERPEYIKIQNLEVASSQTCPTXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSKL 60

Query: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLAXXXXXXXXXX 120
           DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLAXXXXXXXXXX
Sbjct: 61  DSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLAXXXXXXXXXX 120

Query: 121 XXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKTE 180
           XXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVT+LNNNSKTE
Sbjct: 121 XXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTYLNNNSKTE 180

Query: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG
Sbjct: 181 NGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 234

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_023541562.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 365.5 bits (937), Expect = 1.3e-97
Identity = 226/240 (94.17%), Postives = 230/240 (95.83%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVASSQTCPT------XXXXXXXXXXXXXXXXXXFSDEQIRSLESIFY 60
           MERQEYIKIQ+ EVASSQTCPT      XXXXXXXXXXXXXXXXXXFSDEQIRSLESIFY
Sbjct: 1   MERQEYIKIQNFEVASSQTCPTXXXXXXXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFY 60

Query: 61  SSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLAXXXX 120
           SSDSKLDSRKKVQLAAELGLQPRQIS+WFQNRRARWKSKQMENDFRSLRASYDNLAXXXX
Sbjct: 61  SSDSKLDSRKKVQLAAELGLQPRQISVWFQNRRARWKSKQMENDFRSLRASYDNLAXXXX 120

Query: 121 XXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLN 180
           XXXXXXXXXXXXXXKLGELV+EEPGEGCYS NFGKNADENQAKLEILEDEPEQNGVT+LN
Sbjct: 121 XXXXXXXXXXXXXXKLGELVEEEPGEGCYSNNFGKNADENQAKLEILEDEPEQNGVTYLN 180

Query: 181 NNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFEYQPCSSLHLQGLSFWG 235
           NNSKTENGGGHQATHLLEGRSNG SHSEEQVWCDFESDGGVIFEYQPCSSLHLQG SFWG
Sbjct: 181 NNSKTENGGGHQATHLLEGRSNGISHSEEQVWCDFESDGGVIFEYQPCSSLHLQGPSFWG 240

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_022923069.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 6.4e-52
Identity = 143/218 (65.60%), Postives = 157/218 (72.02%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQIRSLESIFYSSDSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FR
Sbjct: 45  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 104

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEI 160
           SLRA+YDNLAXXXXXXXXXXXXXXXXXXKL ELV E P EG YS    +   E + K + 
Sbjct: 105 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 164

Query: 161 LEDEPEQNGVTHLNNNSKTENGG--------GHQATHLLEGRSNGNSHSEEQV------- 220
             DE  QNGVT+LNNN  T+  G        G + TH  EGRSN  SH+ E+        
Sbjct: 165 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 224

Query: 221 --------WCDFESD-GGVIFEYQPCSSLHLQGLSFWG 235
                   WC F+SD GG+IFEYQPCSS  LQ LSFWG
Sbjct: 225 GSFESSENWCGFDSDGGGIIFEYQPCSS--LQELSFWG 260

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_022923068.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 213.8 bits (543), Expect = 6.4e-52
Identity = 143/218 (65.60%), Postives = 157/218 (72.02%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQIRSLESIFYSSDSKLDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FR
Sbjct: 59  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 118

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEI 160
           SLRA+YDNLAXXXXXXXXXXXXXXXXXXKL ELV E P EG YS    +   E + K + 
Sbjct: 119 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 178

Query: 161 LEDEPEQNGVTHLNNNSKTENGG--------GHQATHLLEGRSNGNSHSEEQV------- 220
             DE  QNGVT+LNNN  T+  G        G + TH  EGRSN  SH+ E+        
Sbjct: 179 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 238

Query: 221 --------WCDFESD-GGVIFEYQPCSSLHLQGLSFWG 235
                   WC F+SD GG+IFEYQPCSS  LQ LSFWG
Sbjct: 239 GSFESSENWCGFDSDGGGIIFEYQPCSS--LQELSFWG 274

[Close]

BLAST of Carg20318 vs. NCBI nr
Match: XP_023553122.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_023553124.1 homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 211.1 bits (536), Expect = 4.1e-51
Identity = 169/259 (65.25%), Postives = 185/259 (71.43%), Query Frame = 0


Query: 1   MERQEYIKIQSLEVA-SSQTCPTXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSK 60
           MER+EY  + +LE A        XXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSK
Sbjct: 1   MEREEYFIVPNLETAXXXXXXXXXXXXXXXXXXXXXXXXXXFSDEQIRSLESIFYSSDSK 60

Query: 61  LDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLAXXXXXXXXX 120
           LDSRKKVQLA ELGLQPRQI+IWFQNRRARWKSK+MEN+FRSLRA+YDNLAXXXXXXXXX
Sbjct: 61  LDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLAXXXXXXXXX 120

Query: 121 XXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEILEDEPEQNGVTHLNNNSKT 180
           XXXXXXXXXKL ELVQE P EG YS    K   E + K +   DE  Q+GVT+LNNN  T
Sbjct: 121 XXXXXXXXXKLSELVQEGPREGHYSNEIAKTIYETKEKPQSFHDELGQSGVTYLNNNYNT 180

Query: 181 ENGG--------GHQATHLLEGRSNGNSHSEEQV---------------WCDFESD-GGV 235
           +  G        G + TH  EG SN  SH+ EQ                WC F+SD GG+
Sbjct: 181 DKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNSSFESSENWCGFDSDGGGI 240

[Close]

BLAST of Carg20318 vs. TAIR10
Match: AT2G46680.1 (homeobox 7)

HSP 1 Score: 87.0 bits (214), Expect = 1.6e-17
Identity = 41/59 (69.49%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDF 100
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ++IWFQN+RARWKSKQ+E ++
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

[Close]

BLAST of Carg20318 vs. TAIR10
Match: AT2G18550.1 (homeobox protein 21)

HSP 1 Score: 80.5 bits (197), Expect = 1.5e-15
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 42  SDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRS 101
           SDEQ+R LE I +  D KL+S +K +LA+ELGL PRQ+++WFQNRRARWK+K++E+++  
Sbjct: 66  SDEQVRMLE-ISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTK 125

Query: 102 LRASYD 108
           L+ +Y+
Sbjct: 126 LKNAYE 130

[Close]

BLAST of Carg20318 vs. TAIR10
Match: AT4G36740.1 (homeobox protein 40)

HSP 1 Score: 79.7 bits (195), Expect = 2.6e-15
Identity = 36/68 (52.94%), Postives = 53/68 (77.94%), Query Frame = 0


Query: 42  SDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRS 101
           +DEQ+  LE  F   + KL+S +K +LAAELGL PRQ+++WFQNRRARWK+K++E ++  
Sbjct: 60  TDEQVNMLEMSF-GDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNK 119

Query: 102 LRASYDNL 110
           L+ S+DN+
Sbjct: 120 LKNSHDNV 126

[Close]

BLAST of Carg20318 vs. TAIR10
Match: AT3G61890.1 (homeobox 12)

HSP 1 Score: 79.3 bits (194), Expect = 3.4e-15
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0


Query: 41 FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQ 95
          FS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ++IWFQN+RARWK+KQ
Sbjct: 34 FSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86

[Close]

BLAST of Carg20318 vs. TAIR10
Match: AT5G03790.1 (homeobox 51)

HSP 1 Score: 78.2 bits (191), Expect = 7.6e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0


Query: 45  QIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRA 104
           Q+ SLE  F   + KLDS +KV+L+ ELGLQPRQI++WFQNRRARWK+KQ+E  + SLR 
Sbjct: 85  QLASLERSF-QEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQ 144

Query: 105 SYD 108
            YD
Sbjct: 145 EYD 146

[Close]

BLAST of Carg20318 vs. Swiss-Prot
Match: sp|Q01IK0|HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 43/69 (62.32%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ++IWFQN+RARW+SKQ+E+D+ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 101 SLRASYDNL 110
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]

BLAST of Carg20318 vs. Swiss-Prot
Match: sp|Q7XUJ5|HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 97.4 bits (241), Expect = 2.2e-19
Identity = 43/69 (62.32%), Postives = 61/69 (88.41%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ++IWFQN+RARW+SKQ+E+D+ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 101 SLRASYDNL 110
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]

BLAST of Carg20318 vs. Swiss-Prot
Match: sp|A2X7U1|HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=HOX24 PE=2 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 40/65 (61.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 45  QIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRA 104
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ++IWFQN+RARW+SKQ+E+D+ +LRA
Sbjct: 73  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 132

Query: 105 SYDNL 110
            YD L
Sbjct: 133 QYDAL 137

[Close]

BLAST of Carg20318 vs. Swiss-Prot
Match: sp|Q6H6S3|HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX24 PE=2 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 40/65 (61.54%), Postives = 56/65 (86.15%), Query Frame = 0


Query: 45  QIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRA 104
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ++IWFQN+RARW+SKQ+E+D+ +LRA
Sbjct: 72  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 131

Query: 105 SYDNL 110
            YD L
Sbjct: 132 QYDAL 136

[Close]

BLAST of Carg20318 vs. Swiss-Prot
Match: sp|P46897|ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 87.0 bits (214), Expect = 2.9e-16
Identity = 41/59 (69.49%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDF 100
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ++IWFQN+RARWKSKQ+E ++
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

[Close]

BLAST of Carg20318 vs. TrEMBL
Match: tr|A0A1S3Y4I8|A0A1S3Y4I8_TOBAC (homeobox-leucine zipper protein ATHB-12-like OS=Nicotiana tabacum OX=4097 GN=LOC107772091 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 6.3e-24
Identity = 82/208 (39.42%), Postives = 121/208 (58.17%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQI+SLE++F  +++KL+ RKK+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E D+ 
Sbjct: 46  FSDEQIKSLETMF-ENETKLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYN 105

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGK---NADENQAK 160
            L++++DNLA                  KL +L+Q+E G+ C S  F +   N D+N  K
Sbjct: 106 ILKSNFDNLASQCNSLKKENQSLLLQLQKLNDLMQKERGQYC-SIGFDQESYNRDDNTIK 165

Query: 161 LEILEDEPE---------QNGVTHLNNNSKTEN--GGGHQATHLLEGRSNGNSH-SEEQV 220
            + +E +P           NGV   +++S   +  G   ++ HLL+    G+S  +  + 
Sbjct: 166 NKEMEGKPSLSFDLSEHGVNGVISDDDSSIKADYFGLDEESDHLLKMVEAGDSSLTSPEN 225

Query: 221 WCDFESDGGVIFEYQPCSSLHLQGLSFW 234
           W   E DG  + + QP SS + Q   FW
Sbjct: 226 WGSLEDDG--LLDQQPNSSNYDQWWDFW 249

[Close]

BLAST of Carg20318 vs. TrEMBL
Match: tr|M5X028|M5X028_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.7e-21
Identity = 68/143 (47.55%), Postives = 89/143 (62.24%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQIRSLES+F  S+S+L+ RKK+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E D+ 
Sbjct: 43  FSDEQIRSLESLF-ESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 102

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEI 160
            LRA+Y+NLA                  KL +L++E P E   S     N D  ++    
Sbjct: 103 ILRANYNNLASKFEALKKEKQALVIQVQKLNDLMRERPEEERQSCGESDNGDAARS---- 162

Query: 161 LEDEPEQNGVTHLNNNSKTENGG 184
              E +Q  + HL +  K+E GG
Sbjct: 163 ---ESDQVKLNHL-SLEKSEQGG 176

[Close]

BLAST of Carg20318 vs. TrEMBL
Match: tr|Q9XH73|Q9XH73_PRUAR (Homeobox leucine zipper protein OS=Prunus armeniaca OX=36596 GN=HBLZP PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 2.9e-21
Identity = 96/195 (49.23%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQIR LESIF  +DSKL+ R+KVQ+A ELGLQPRQ++IWFQNRRARWKSKQ+E DFR
Sbjct: 38  FSDEQIRLLESIF-EADSKLEPRRKVQVARELGLQPRQVAIWFQNRRARWKSKQIEQDFR 97

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQEEPGEGCYSTNFGKNADENQAKLEI 160
           +LRA YD   XXXXXXXXXXXXX     KL ELV  +P +G          D ++     
Sbjct: 98  TLRADYDXXXXXXXXXXXXXXXXLMQMQKLNELV-GKPSQGLEGNIM---VDGSR----- 157

Query: 161 LEDEPEQNGV--THLNNNSKTENGGGHQATHLLEGRSNGNSHSEEQVWCDFESDGGVIFE 220
           L++E E  GV  +H NN S      G +   LL       S    Q W  FE    ++F+
Sbjct: 158 LQEELEPRGVIQSHKNNTSNDVGCHGDEIHELLSMAHVDASSLSPQDWHRFEP--SILFD 217

Query: 221 YQPCSSLHLQGLSFW 234
               +S H   L+FW
Sbjct: 218 PSRFTSSH--WLNFW 218

[Close]

BLAST of Carg20318 vs. TrEMBL
Match: tr|A0A067JWT5|A0A067JWT5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.6e-21
Identity = 76/185 (41.08%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E D+ 
Sbjct: 93  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 152

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQE--EPGEGCYSTNFGKNAD--ENQA 160
            LRA+Y+NLA                  KL EL+++  E GE C     G N+   E++A
Sbjct: 153 VLRANYNNLASRFETLKKEKQALAIQLQKLNELIEKPREEGECCGEQETGVNSSEGESEA 212

Query: 161 KLEILEDEPEQNGVTHLNNNSKT--------ENGGGHQATHLLEGRSNGNSHSEEQVWCD 214
           K  I   E  +NG+   ++   +        E    +    ++E  ++G+  S+E  W  
Sbjct: 213 KGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEA-ADGSLTSQED-WRS 272

[Close]

BLAST of Carg20318 vs. TrEMBL
Match: tr|A0A0A7CB71|A0A0A7CB71_JATCU (Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.6e-21
Identity = 76/185 (41.08%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 41  FSDEQIRSLESIFYSSDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFR 100
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ++IWFQN+RARWKSKQ+E D+ 
Sbjct: 40  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 99

Query: 101 SLRASYDNLAXXXXXXXXXXXXXXXXXXKLGELVQE--EPGEGCYSTNFGKNAD--ENQA 160
            LRA+Y+NLA                  KL EL+++  E GE C     G N+   E++A
Sbjct: 100 VLRANYNNLASRFETLKKEKQALAIRLQKLNELIEKPREEGECCGEQETGVNSSEGESEA 159

Query: 161 KLEILEDEPEQNGVTHLNNNSKT--------ENGGGHQATHLLEGRSNGNSHSEEQVWCD 214
           K  I   E  +NG+   ++   +        E    +    ++E  ++G+  S+E  W  
Sbjct: 160 KGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEA-ADGSLTSQED-WRS 219

The following BLAST results are available for this feature:

BLAST of Carg20318 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945963.1	3.0e-102	98.72	homeobox-leucine zipper protein ATHB-12-like [Cucurbita moschata]	[more]
XP_023541562.1	1.3e-97	94.17	homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo]	[more]
XP_022923069.1	6.4e-52	65.60	homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata]	[more]
XP_022923068.1	6.4e-52	65.60	homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata]	[more]
XP_023553122.1	4.1e-51	65.25	homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_02...	[more]

BLAST of Carg20318 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46680.1	1.6e-17	69.49	homeobox 7	[more]
AT2G18550.1	1.5e-15	54.55	homeobox protein 21	[more]
AT4G36740.1	2.6e-15	52.94	homeobox protein 40	[more]
AT3G61890.1	3.4e-15	70.37	homeobox 12	[more]
AT5G03790.1	7.6e-15	61.90	homeobox 51	[more]

BLAST of Carg20318 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q01IK0\|HOX22_ORYSI	2.2e-19	62.32	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q7XUJ5\|HOX22_ORYSJ	2.2e-19	62.32	Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|A2X7U1\|HOX24_ORYSI	2.7e-17	61.54	Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=...	[more]
sp\|Q6H6S3\|HOX24_ORYSJ	2.7e-17	61.54	Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 G...	[more]
sp\|P46897\|ATHB7_ARATH	2.9e-16	69.49	Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7...	[more]

BLAST of Carg20318 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3Y4I8\|A0A1S3Y4I8_TOBAC	6.3e-24	39.42	homeobox-leucine zipper protein ATHB-12-like OS=Nicotiana tabacum OX=4097 GN=LOC...	[more]
tr\|M5X028\|M5X028_PRUPE	1.7e-21	47.55	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1	[more]
tr\|Q9XH73\|Q9XH73_PRUAR	2.9e-21	49.23	Homeobox leucine zipper protein OS=Prunus armeniaca OX=36596 GN=HBLZP PE=2 SV=1	[more]
tr\|A0A067JWT5\|A0A067JWT5_JATCU	6.6e-21	41.08	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1	[more]
tr\|A0A0A7CB71\|A0A0A7CB71_JATCU	6.6e-21	41.08	Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0043565	sequence-specific DNA binding
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR017970	Homeobox_CS
IPR003106	Leu_zip_homeo
IPR001356	Homeobox_dom
IPR000047	HTH_motif

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20318-RA	Carg20318-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..133
None	No IPR available	GENE3D	G3DSA:1.10.10.60		coord: 35..99 e-value: 4.6E-18 score: 66.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 168..184
None	No IPR available	PANTHER	PTHR24326:SF346	SUBFAMILY NOT NAMED	coord: 13..178
None	No IPR available	PANTHER	PTHR24326	FAMILY NOT NAMED	coord: 13..178
IPR000047	Helix-turn-helix motif	PRINTS	PR00031	HTHREPRESSR	coord: 73..89 score: 58.42 coord: 64..73 score: 48.35
IPR001356	Homeobox domain	SMART	SM00389	HOX_1	coord: 35..97 e-value: 8.6E-18 score: 75.1
IPR001356	Homeobox domain	PFAM	PF00046	Homeobox	coord: 38..91 e-value: 2.2E-17 score: 62.5
IPR001356	Homeobox domain	PROSITE	PS50071	HOMEOBOX_2	coord: 32..93 score: 17.346
IPR001356	Homeobox domain	CDD	cd00086	homeodomain	coord: 40..94 e-value: 4.25133E-15 score: 66.1128
IPR003106	Leucine zipper, homeobox-associated	PFAM	PF02183	HALZ	coord: 93..134 e-value: 1.3E-13 score: 50.8
IPR017970	Homeobox, conserved site	PROSITE	PS00027	HOMEOBOX_1	coord: 68..91
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	SSF46689	Homeodomain-like	coord: 31..94

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20318	CmaCh16G000240	Cucurbita maxima (Rimu)	carcmaB0752
Carg20318	CmaCh18G013380	Cucurbita maxima (Rimu)	carcmaB0754
Carg20318	CmoCh16G000280	Cucurbita moschata (Rifu)	carcmoB0730
Carg20318	CmoCh18G013710	Cucurbita moschata (Rifu)	carcmoB0732
Carg20318	Lsi07G003120	Bottle gourd (USVL1VR-Ls)	carlsiB491

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg20318	Carg15041	Silver-seed gourd	carcarB503

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20318	Cucurbita pepo (Zucchini)	carcpeB0759
Carg20318	Cucurbita pepo (Zucchini)	carcpeB0761