Carg15041-RA (mRNA) Silver-seed gourd

Overview
NameCarg15041-RA
TypemRNA
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionHomeobox-leucine zipper protein like
LocationCucurbita_argyrosperma_scaffold_078 : 256332 .. 259047 (+)
Sequence length1396
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGGTGAGGTGGGGAAGGGACTTCTCCCCTCGCACGCACGCACGCACGCACGCAGGGGCGCGCGGGCAACAAACGGCAACGAACAACGTACAAAAACAAGGATGATGGCTAATTAAAAGAGGAGGACTGCAATGGGCAATGGTATGGGTGGCCGCAGGGGAGGAGGGGGAGACGGCGGACGTAGCAGCACCGAAAGGCTGAGAAAATGCATGGAATAAAGGTGGGGTGAATGAGGGGGGAGGAGGGCATCCGGCAACTGGAAATGCAAAATGCAAATGCAAATGCAAATTTCGAAGTCGAAAACACAAAATTCAAATTCAGTAATTAATTGCTTGTCTTCTCTTTCTCCTGTCTCCCCCACTCCCTATTCTGAACCCGCGGGAAAACAGGTTGTTATCATAAAATCCCATTTTAGATAAAAGGATGGAAATGGAACAAACACATCATCATTATTATTAGAAGGTGCTTCATAGTCCACACACACACCCTTCCCCCCACCATCTCCCTCTCAGCACCTCATTTCCTCCCCCTTTCTTCTCCTCTTTGCATTCCCCTTTTCAAAATCACACCAAATCTTTCCTTCTCAATTTTAGGTAATATCAAAACCCTTCTAAACCAATCACTAACTTACCTCCACATTCCCAAACTCCCCCACCAAACTTCAGTGCCTTTCTTTTTCCTTTTTTCCTTTTTCCCCAGCTTTTCACGGACCCCAGCTTCCCACTCACACACTTCGTAGCTTCAACTTTTCAAAGGAGACTGTCAGCATCATCAACTCAAGGAAACACATTGAATTCCATCGCTTCCTGTCCTGCCATCCATCTCCAGCCCAACAAAACACCACATTGAATTCCATCGCTTTTTCCTGCCAACCAACTGCTCCCTCTGTAAGCCACAGCCAGATATTATCATCCTTCAAAACTAAAGTTAGAGGCTCTGATTGAAACCATGACTATGATATTTTTGTAAAAGAGCAGATATGTGTGGCTATGTAGAAGAAAAGGTGTTGAATGCATTCCAAGTTAGCTAGGGGATAAGCATGCAGTGTAGTGCTTTTTGACACTTACCAAGCCTTTATAGCAAAAGCGTTTCAGCAAGAAGGAAAAAATGCTGTACAGGGTTGTGGTCTTCTTAGTTTTGAAGCCGAAAAGGGAAAATGGGTGCAGATAAGCACTAGGGATGGACTGGAAAAGGCCACACGTTAGCGAACTCCATTGGTCTTCCATGCAGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGGTACCAAAGTTTTTCTTCCTTTTGCTAAAGTCCTTCTATTTCTGAGCATTTTCATCAGTTGATGAGTAAACAGTATGCTGCCATTTGAAACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAGTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTTAACAAAGTCCCAACGCAACTTGCAATGGCTAAACTTGAGGGGATTCCAAAGTATACTAAAGATTGGCTCCTAAACATTGGTCTTATTACTACCAGGTGGAAGATTACCAATTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATCGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGTCGTAGTTGAATTACGAAATAAACAGATATAAGGACACTATAGGAAGTTCATCACTCGCATGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTT

mRNA sequence

ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGAGAGGAATCCAGACTCTACTAAAGATTAGCTCCCAGTCCCAATTGTTCGTTCTTATTACTACTACACTCACTTAGGAACTTAACAAAGTCCCAACGCAACTTGCAATGGCTAAACTTGAGGGGATTCCAAAGTATACTAAAGATTGGCTCCTAAACATTGGTCTTATTACTACCAGGTGGAAGATTACCAATTAGAGTTGATTACCATGAACTAATCCGAGAAACTGTCATCACCTAGTTGATTTGTAATCGTTTACTACGTAAATAAAATCCTAGTTCCAACAGTCATGCATCAGGCAAGTATTATTCCTTAGTCGTAGTTGAATTACGAAATAAACAGATATAAGGACACTATAGGAAGTTCATCACTCGCATGTTCATTAGTAGCATCCAAGAAATAATGCAGACAGCTT

Coding sequence (CDS)

ATGGTGGGAGGTGCGGGACTTGAGATGGAGGTGGAAGATGAAGGAGAGGGAGAGGAGAGAGAGGAGGAGGATAATGGCGATGAAGGAGATGGTGGTGAGATCGAAGGTCGCAGGATCCAAGAAAGAGAGAGGAGCAATGAAGAACATCGATTTTTGTCCGTCGCCCCTGGGAAACTCGTTTCACACTTTTCTTACTTACCTTACCCGCCTATATATTCTGTTCTATTTTCCTGTGTGGTTTTCAGGAGAATGAATGGACAGAAGTTAACTCCTAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGAAGAAAACCAACAACATGAACAAAAGAAGGTTTAGTGATGAACAAATCAGGTCACTGGAGTCCATATTTTACTCATCGGATTCAAAGCTCGATTCCAGGAAGAAGGTGCAGCTTGCAACAGAGTTGGGACTGCAACCTCGCCAAATTGCTATATGGTTTCAGAATAGAAGGGCAAGATGGAAGTCCAAGGAGATGGAGAACAATTTCAGGAGCCTCAGAGCTAATTATGACAATCTAGCATCTCAGTTTAAAACATTACAGGAAGAGAAGAACTCCTTGCTCTCACAGTTGCAGAAGCTAAGCGAGCTTGTTCACGAAGGACCTCGTGAGGGCCATTATTCCAATGAGATTGCAGAAACCATTTACGAGACAAAAGAAAAGCCACAAAGCTTCCATGATGAACTAGGACAGAGTGGAGTCACGTATTTGAACAATAATTATAACACAGACAAGAGGGGTACAGAGAATGGAGAAGGTGATCGAGGACTTGAAATGACCCATTCGTCGGAAGGCAGAAGCAACGACATAAGCCATGCGGTGGAGAAAGCATGTCAACTTTTGAACCCGAATGGTTCGTTTGAATCATCAGAGAATTGGTGCGGCTTTGATTCGGATGGTGGTGGTATCATATTTGAGTATCAGCCATGTAGTAGTTTGCAGGAGCTAAGTTTCTGGGGATGA

Protein sequence

MVGGAGLEMEVEDEGEGEEREEEDNGDEGDGGEIEGRRIQERERSNEEHRFLSVAPGKLVSHFSYLPYPPIYSVLFSCVVFRRMNGQKLTPRRRRRRRRRKKKTNNMNKRRFSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRANYDNLASQFKTLQEEKNSLLSQLQKLSELVHEGPREGHYSNEIAETIYETKEKPQSFHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG
Homology
[Close]
BLAST of Carg15041-RA vs. NCBI nr
Match: XP_022923069.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 8.2e-106
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 45  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 104

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS
Sbjct: 105 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 164

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQ+GVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSND SHAVEKACQLLNPN
Sbjct: 165 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 224

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG
Sbjct: 225 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 260

[Close]
BLAST of Carg15041-RA vs. NCBI nr
Match: XP_022923068.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 393.3 bits (1009), Expect = 8.2e-106
Identity = 214/216 (99.07%), Postives = 215/216 (99.54%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 59  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 118

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS
Sbjct: 119 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 178

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQ+GVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSND SHAVEKACQLLNPN
Sbjct: 179 FHDELGQNGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDRSHAVEKACQLLNPN 238

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG
Sbjct: 239 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 274

[Close]
BLAST of Carg15041-RA vs. NCBI nr
Match: XP_023553122.1 (homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_023553124.1 homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 382.1 bits (980), Expect = 1.9e-102
Identity = 210/216 (97.22%), Postives = 212/216 (98.15%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR
Sbjct: 42  FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 101

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
           SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELV EGPREGHYSNEIA+TIYETKEKPQS
Sbjct: 102 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVQEGPREGHYSNEIAKTIYETKEKPQS 161

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPN 291
           FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPN
Sbjct: 162 FHDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPN 221

Query: 292 GSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
            SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 222 SSFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 257

[Close]
BLAST of Carg15041-RA vs. NCBI nr
Match: XP_022984932.1 (homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 5.7e-99
Identity = 204/215 (94.88%), Postives = 207/215 (96.28%), Query Frame = 0 

Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRR RWKSKEMENNFRS
Sbjct: 43  SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRS 102

Query: 173 LRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQSF 232
           LRANYDN  XXXXXXXXXXXXXXXXXX  SELV EGPREGHYSNEIA+TIYETKEKPQSF
Sbjct: 103 LRANYDNXXXXXXXXXXXXXXXXXXXXXXSELVQEGPREGHYSNEIAKTIYETKEKPQSF 162

Query: 233 HDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNG 292
           HDELGQSGVTYL+NNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPNG
Sbjct: 163 HDELGQSGVTYLSNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNG 222

Query: 293 SFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 223 SFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 257

[Close]
BLAST of Carg15041-RA vs. NCBI nr
Match: XP_022984931.1 (homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 370.5 bits (950), Expect = 5.7e-99
Identity = 204/215 (94.88%), Postives = 207/215 (96.28%), Query Frame = 0 

Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRR RWKSKEMENNFRS
Sbjct: 57  SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRVRWKSKEMENNFRS 116

Query: 173 LRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQSF 232
           LRANYDN  XXXXXXXXXXXXXXXXXX  SELV EGPREGHYSNEIA+TIYETKEKPQSF
Sbjct: 117 LRANYDNXXXXXXXXXXXXXXXXXXXXXXSELVQEGPREGHYSNEIAKTIYETKEKPQSF 176

Query: 233 HDELGQSGVTYLNNNYNTDKRGTENGEGDRGLEMTHSSEGRSNDISHAVEKACQLLNPNG 292
           HDELGQSGVTYL+NNYNTDKRGTENGEGDRGLEMTHSSEG SNDISHAVE+ACQLLNPNG
Sbjct: 177 HDELGQSGVTYLSNNYNTDKRGTENGEGDRGLEMTHSSEGISNDISHAVEQACQLLNPNG 236

Query: 293 SFESSENWCGFDSDGGGIIFEYQPCSSLQELSFWG 328
           SFESSENWCGFDSDGGGIIFE QPCSSLQELSFWG
Sbjct: 237 SFESSENWCGFDSDGGGIIFECQPCSSLQELSFWG 271

[Close]
BLAST of Carg15041-RA vs. TAIR10
Match: AT2G46680.1 (homeobox 7)

HSP 1 Score: 86.3 bits (212), Expect = 3.9e-17
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNF 171
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN+RARWKSK++E  +
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

[Close]
BLAST of Carg15041-RA vs. TAIR10
Match: AT3G61890.1 (homeobox 12)

HSP 1 Score: 79.7 bits (195), Expect = 3.6e-15
Identity = 38/54 (70.37%), Postives = 49/54 (90.74%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKE 166
           FS+EQI+SLE IF  S+++L+ RKKVQ+A ELGLQPRQ+AIWFQN+RARWK+K+
Sbjct: 34  FSEEQIKSLELIF-ESETRLEPRKKVQVARELGLQPRQVAIWFQNKRARWKTKQ 86

[Close]
BLAST of Carg15041-RA vs. TAIR10
Match: AT2G18550.1 (homeobox protein 21)

HSP 1 Score: 79.0 bits (193), Expect = 6.2e-15
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0 

Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           SDEQ+R LE I +  D KL+S +K +LA+ELGL PRQ+A+WFQNRRARWK+K +E+ +  
Sbjct: 66  SDEQVRMLE-ISFEDDHKLESERKDRLASELGLDPRQVAVWFQNRRARWKNKRVEDEYTK 125

Query: 173 LRANYD 179
           L+  Y+
Sbjct: 126 LKNAYE 130

[Close]
BLAST of Carg15041-RA vs. TAIR10
Match: AT5G03790.1 (homeobox 51)

HSP 1 Score: 78.6 bits (192), Expect = 8.1e-15
Identity = 39/63 (61.90%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+ SLE  F   + KLDS +KV+L+ ELGLQPRQIA+WFQNRRARWK+K++E  + SLR 
Sbjct: 85  QLASLERSF-QEEIKLDSDRKVKLSRELGLQPRQIAVWFQNRRARWKAKQLEQLYDSLRQ 144

Query: 176 NYD 179
            YD
Sbjct: 145 EYD 146

[Close]
BLAST of Carg15041-RA vs. TAIR10
Match: AT4G36740.1 (homeobox protein 40)

HSP 1 Score: 77.0 bits (188), Expect = 2.4e-14
Identity = 35/68 (51.47%), Postives = 50/68 (73.53%), Query Frame = 0 

Query: 113 SDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRS 172
           +DEQ+  LE  F   + KL+S +K +LA ELGL PRQ+A+WFQNRRARWK+K +E  +  
Sbjct: 60  TDEQVNMLEMSF-GDEHKLESERKDRLAAELGLDPRQVAVWFQNRRARWKNKRLEEEYNK 119

Query: 173 LRANYDNL 181
           L+ ++DN+
Sbjct: 120 LKNSHDNV 126

[Close]
BLAST of Carg15041-RA vs. Swiss-Prot
Match: sp|Q01IK0|HOX22_ORYSI (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18
Identity = 42/69 (60.87%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 172 SLRANYDNL 181
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]
BLAST of Carg15041-RA vs. Swiss-Prot
Match: sp|Q7XUJ5|HOX22_ORYSJ (Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX22 PE=2 SV=2)

HSP 1 Score: 95.5 bits (236), Expect = 1.2e-18
Identity = 42/69 (60.87%), Postives = 61/69 (88.41%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           F++EQIRSLES+F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ 
Sbjct: 77  FTEEQIRSLESMFHAHHAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDYA 136

Query: 172 SLRANYDNL 181
           +LR+ YD L
Sbjct: 137 ALRSKYDAL 145

[Close]
BLAST of Carg15041-RA vs. Swiss-Prot
Match: sp|A2X7U1|HOX24_ORYSI (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=HOX24 PE=2 SV=2)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ +LRA
Sbjct: 73  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 132

Query: 176 NYDNL 181
            YD L
Sbjct: 133 QYDAL 137

[Close]
BLAST of Carg15041-RA vs. Swiss-Prot
Match: sp|Q6H6S3|HOX24_ORYSJ (Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 GN=HOX24 PE=2 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.4e-16
Identity = 39/65 (60.00%), Postives = 56/65 (86.15%), Query Frame = 0 

Query: 116 QIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSLRA 175
           Q+RSLE+ F++  +KL+ R+K +LA ELGLQPRQ+AIWFQN+RARW+SK++E+++ +LRA
Sbjct: 72  QVRSLETTFHARRAKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQIEHDYAALRA 131

Query: 176 NYDNL 181
            YD L
Sbjct: 132 QYDAL 136

[Close]
BLAST of Carg15041-RA vs. Swiss-Prot
Match: sp|P46897|ATHB7_ARATH (Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7 PE=1 SV=2)

HSP 1 Score: 86.3 bits (212), Expect = 7.0e-16
Identity = 41/59 (69.49%), Postives = 52/59 (88.14%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNF 171
           FSDEQI+SLE +F  S+++L+ RKKVQLA ELGLQPRQ+AIWFQN+RARWKSK++E  +
Sbjct: 36  FSDEQIKSLEMMF-ESETRLEPRKKVQLARELGLQPRQVAIWFQNKRARWKSKQLETEY 93

[Close]
BLAST of Carg15041-RA vs. TrEMBL
Match: tr|A0A067JWT5|A0A067JWT5_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 81/218 (37.16%), Postives = 115/218 (52.75%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 93  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 152

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL+EL+ +   EG    E  ET   + E    
Sbjct: 153 VLRANYNNLASRFETLKKEKQALAIQLQKLNELIEKPREEGECCGE-QETGVNSSE---- 212

Query: 232 FHDELGQSGVTYLNNNYNTDKRG---TENGEGDRGLEMTHSSEGRSNDISHAVEKACQLL 291
                G+S    + +++   + G     + +    +E     E   N++   VE A    
Sbjct: 213 -----GESEAKGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEAA---- 272

Query: 292 NPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
             +GS  S E+W   +SDG   +F+     S Q   FW
Sbjct: 273 --DGSLTSQEDWRSLESDG---LFDQSNSGSDQWWDFW 290

[Close]
BLAST of Carg15041-RA vs. TrEMBL
Match: tr|A0A0A7CB71|A0A0A7CB71_JATCU (Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.9e-22
Identity = 81/218 (37.16%), Postives = 115/218 (52.75%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQI+SLE++F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 40  FSDEQIKSLETMF-ESESRLEPRKKLQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 99

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL+EL+ +   EG    E  ET   + E    
Sbjct: 100 VLRANYNNLASRFETLKKEKQALAIRLQKLNELIEKPREEGECCGE-QETGVNSSE---- 159

Query: 232 FHDELGQSGVTYLNNNYNTDKRG---TENGEGDRGLEMTHSSEGRSNDISHAVEKACQLL 291
                G+S    + +++   + G     + +    +E     E   N++   VE A    
Sbjct: 160 -----GESEAKGVISSFERSRNGLGVASDEDSSIKVEYFGLEEEPDNNLISMVEAA---- 219

Query: 292 NPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
             +GS  S E+W   +SDG   +F+     S Q   FW
Sbjct: 220 --DGSLTSQEDWRSLESDG---LFDQSNSGSDQWWDFW 237

[Close]
BLAST of Carg15041-RA vs. TrEMBL
Match: tr|M5X028|M5X028_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.4e-21
Identity = 79/220 (35.91%), Postives = 116/220 (52.73%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIRSLES+F  S+S+L+ RKK+QLA ELGLQPRQ+AIWFQN+RARWKSK++E ++ 
Sbjct: 43  FSDEQIRSLESLF-ESESRLEPRKKMQLAKELGLQPRQVAIWFQNKRARWKSKQLERDYS 102

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHEGPREGHYSNEIAETIYETKEKPQS 231
            LRANY+NLA                  KL++L+ E P E            E +   +S
Sbjct: 103 ILRANYNNLASKFEALKKEKQALVIQVQKLNDLMRERPEE------------ERQSCGES 162

Query: 232 FHDELGQSGVTYLNNNYNTDKRGTENGEG-----DRGLEMTHSSEGRSNDISHAVEKACQ 291
            + +  +S    +  N+ + ++  + G G     D  ++  +       ++   VE A  
Sbjct: 163 DNGDAARSESDQVKLNHLSLEKSEQGGRGVLSDDDSSIKAEYFGLEDEPNLVSLVESA-- 222

Query: 292 LLNPNGSFESSENWCGFDSDGGGIIFEYQPCSSLQELSFW 327
               +GS  S+E+W   +S+G    F+    S  Q   FW
Sbjct: 223 ----DGSLTSTEDWGRLNSEG---FFDESISSDYQWWDFW 240

[Close]
BLAST of Carg15041-RA vs. TrEMBL
Match: tr|A0A1R3JJN8|A0A1R3JJN8_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05603 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 2.7e-20
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 0 

Query: 112 FSDEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFR 171
           FSDEQIR LESIF  S++KL+ RKK+QLA ELGLQPRQ+AIWFQNRRARWKSK++E ++R
Sbjct: 39  FSDEQIRLLESIF-ESETKLEPRKKLQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYR 98

Query: 172 SLRANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHE 208
           +LR NYDNLA                   LSEL+ E
Sbjct: 99  TLRDNYDNLASKFESLKNEKQALMLQLQNLSELLAE 133

[Close]
BLAST of Carg15041-RA vs. TrEMBL
Match: tr|A0A1R3JSI7|A0A1R3JSI7_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14344 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 7.8e-20
Identity = 57/94 (60.64%), Postives = 68/94 (72.34%), Query Frame = 0 

Query: 114 DEQIRSLESIFYSSDSKLDSRKKVQLATELGLQPRQIAIWFQNRRARWKSKEMENNFRSL 173
           DEQIR LESIF  S++KL+ RKK+QLA ELGLQPRQ+AIWFQNRRARWKSK++E ++R+L
Sbjct: 40  DEQIRLLESIF-ESETKLEPRKKLQLARELGLQPRQVAIWFQNRRARWKSKQIEQDYRAL 99

Query: 174 RANYDNLAXXXXXXXXXXXXXXXXXXKLSELVHE 208
           RANYDNLA                   LSEL+ E
Sbjct: 100 RANYDNLASRFESLKNEKQALMLQLQNLSELLAE 132

The following BLAST results are available for this feature:
BLAST of Carg15041-RA vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022923069.18.2e-10699.07homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita moschata][more]
XP_022923068.18.2e-10699.07homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita moschata][more]
XP_023553122.11.9e-10297.22homeobox-leucine zipper protein ATHB-12-like [Cucurbita pepo subsp. pepo] >XP_02... [more]
XP_022984932.15.7e-9994.88homeobox-leucine zipper protein ATHB-12-like isoform X2 [Cucurbita maxima][more]
XP_022984931.15.7e-9994.88homeobox-leucine zipper protein ATHB-12-like isoform X1 [Cucurbita maxima][more]
BLAST of Carg15041-RA vs. TAIR10
Match NameE-valueIdentityDescription
AT2G46680.13.9e-1769.49homeobox 7[more]
AT3G61890.13.6e-1570.37homeobox 12[more]
AT2G18550.16.2e-1556.06homeobox protein 21[more]
AT5G03790.18.1e-1561.90homeobox 51[more]
AT4G36740.12.4e-1451.47homeobox protein 40[more]
BLAST of Carg15041-RA vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q01IK0|HOX22_ORYSI1.2e-1860.87Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
sp|Q7XUJ5|HOX22_ORYSJ1.2e-1860.87Homeobox-leucine zipper protein HOX22 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|A2X7U1|HOX24_ORYSI1.4e-1660.00Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. indica OX=39946 GN=... [more]
sp|Q6H6S3|HOX24_ORYSJ1.4e-1660.00Homeobox-leucine zipper protein HOX24 OS=Oryza sativa subsp. japonica OX=39947 G... [more]
sp|P46897|ATHB7_ARATH7.0e-1669.49Homeobox-leucine zipper protein ATHB-7 OS=Arabidopsis thaliana OX=3702 GN=ATHB-7... [more]
BLAST of Carg15041-RA vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A067JWT5|A0A067JWT5_JATCU4.9e-2237.16Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_14207 PE=4 SV=1[more]
tr|A0A0A7CB71|A0A0A7CB71_JATCU4.9e-2237.16Homeobox 12 OS=Jatropha curcas OX=180498 GN=HB12 PE=2 SV=1[more]
tr|M5X028|M5X028_PRUPE1.4e-2135.91Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_2G194400 PE=4 SV=1[more]
tr|A0A1R3JJN8|A0A1R3JJN8_COCAP2.7e-2060.42Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05603 PE=4 ... [more]
tr|A0A1R3JSI7|A0A1R3JSI7_9ROSI7.8e-2060.64Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_14344 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0043565sequence-specific DNA binding
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR009057Homeobox-like_sf
IPR017970Homeobox_CS
IPR003106Leu_zip_homeo
IPR001356Homeobox_dom
IPR000047HTH_motif
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003677 DNA binding
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Carg15041Carg15041gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Carg15041-RACarg15041-RA-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15041-RA.exon.1Carg15041-RA.exon.1exon
Carg15041-RA.exon.2Carg15041-RA.exon.2exon
Carg15041-RA.exon.3Carg15041-RA.exon.3exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15041-RA.CDS.1Carg15041-RA.CDS.1CDS
Carg15041-RA.CDS.2Carg15041-RA.CDS.2CDS
Carg15041-RA.CDS.3Carg15041-RA.CDS.3CDS


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameType
Carg15041-RA.three_prime_UTR.1Carg15041-RA.three_prime_UTR.1three_prime_UTR


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 163..204
NoneNo IPR availableGENE3DG3DSA:1.10.10.60coord: 107..170
e-value: 3.4E-17
score: 63.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 243..275
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 254..269
NoneNo IPR availablePANTHERPTHR24326:SF346SUBFAMILY NOT NAMEDcoord: 99..307
NoneNo IPR availablePANTHERPTHR24326FAMILY NOT NAMEDcoord: 99..307
IPR000047Helix-turn-helix motifPRINTSPR00031HTHREPRESSRcoord: 144..160
score: 58.02
coord: 135..144
score: 44.56
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 99..168
e-value: 7.6E-16
score: 68.6
IPR001356Homeobox domainPFAMPF00046Homeoboxcoord: 109..162
e-value: 8.5E-17
score: 60.6
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 103..164
score: 17.167
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 109..165
e-value: 9.94518E-15
score: 66.8832
IPR003106Leucine zipper, homeobox-associatedPFAMPF02183HALZcoord: 164..205
e-value: 7.1E-10
score: 38.8
IPR017970Homeobox, conserved sitePROSITEPS00027HOMEOBOX_1coord: 139..162
IPR009057Homeobox-like domain superfamilySUPERFAMILYSSF46689Homeodomain-likecoord: 109..167