Carg14154 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg14154
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	late embryogenesis abundant protein D-29-like
Location	Cucurbita_argyrosperma_scaffold_045 : 295739 .. 296543 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGACAAGGACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGCGGAGATGGGGGTGGTGGAAAAATGCAGGGGTGAAATAGGACAAGGGGCAATGAAGGATGTGAAGGATAATATCACTGAAATTATGGAGATGACGAATATTGAGGGAAAAGCAGAAGCCGTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCAGCTGAGTCTTGGTCCAACTGGGCTTCCGCTCAGATTTCCAAGTAAATATTTATTGTGTTCTTGTTCCATGTTTTATTCTAAATCAACAATGTCGTGCCAAATTTTTAGGGTTTTTTTCTTCTTCTTTTTAACTAATTTAGGCTCAAATATTTATGTAGGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACTTAGCCGGCGACGCAGCCACAAAAACCACACACACAATCCACACAGCAGCTTCAGGTAATCAAACCGAATTTTCAAAACCCATTATTTAATGGTTATTTAATTGTGTTGTCCGTACATTTAGATGCATCTGACAAAGCCGGAGAGGCGGTGAAGGCGGTGTCGGATAAAGCCAGCGACGCCAAAACGAAGGCCAAAGACACGTTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAAGCGGCTAAAACCGAAGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGA

mRNA sequence

ATGGGGACAAGGACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGCGGAGATGGGGGTGGTGGAAAAATGCAGGGGTGAAATAGGACAAGGGGCAATGAAGGATGTGAAGGATAATATCACTGAAATTATGGAGATGACGAATATTGAGGGAAAAGCAGAAGCCGTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCAGCTGAGTCTTGGTCCAACTGGGCTTCCGCTCAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACTTAGCCGGCGACGCAGCCACAAAAACCACACACACAATCCACACAGCAGCTTCAGATGCATCTGACAAAGCCGGAGAGGCGGTGAAGGCGGTGTCGGATAAAGCCAGCGACGCCAAAACGAAGGCCAAAGACACGTTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAAGCGGCTAAAACCGAAGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGA

Coding sequence (CDS)

ATGGGGACAAGGACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGCGGAGATGGGGGTGGTGGAAAAATGCAGGGGTGAAATAGGACAAGGGGCAATGAAGGATGTGAAGGATAATATCACTGAAATTATGGAGATGACGAATATTGAGGGAAAAGCAGAAGCCGTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCAGCTGAGTCTTGGTCCAACTGGGCTTCCGCTCAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACTTAGCCGGCGACGCAGCCACAAAAACCACACACACAATCCACACAGCAGCTTCAGATGCATCTGACAAAGCCGGAGAGGCGGTGAAGGCGGTGTCGGATAAAGCCAGCGACGCCAAAACGAAGGCCAAAGACACGTTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAAGCGGCTAAAACCGAAGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGA

Protein sequence

MGTRTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKKGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATKTTHTIHTAASDASDKAGEAVKAVSDKASDAKTKAKDTFVNGKEKAAKVYEAAKTEVEREVAAVKECVNCEAAKEMASHAAVQIGAKIREKSSEL

Homology

[Close]

BLAST of Carg14154 vs. NCBI nr
Match: XP_022942848.1 (late embryogenesis abundant protein D-29-like [Cucurbita moschata])

HSP 1 Score: 234.6 bits (597), Expect = 3.1e-58
Identity = 196/206 (95.15%), Postives = 196/206 (95.15%), Query Frame = 0


Query: 1   MGTRTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK 60
           MGT TWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK
Sbjct: 1   MGTSTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK 60

Query: 61  GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATKXXXXXXXX 120
           GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMD AGDAATK   XXXXX
Sbjct: 61  GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDKAGDAATKTTHXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVN 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 CEAAKEMASHAAVQIGAKIREKSSEL 207
             AAKEMASHAAVQIGAKIREKSSEL
Sbjct: 181 XXAAKEMASHAAVQIGAKIREKSSEL 206

[Close]

BLAST of Carg14154 vs. NCBI nr
Match: XP_022983013.1 (late embryogenesis abundant protein D-29-like [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 130/206 (63.11%), Postives = 135/206 (65.53%), Query Frame = 0


Query: 1   MGTRTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK 60
           MGT TWSFVAVLWLLWA EMGVVEKCRGEIGQGA+KDVKDNITEI EM N++GKAEA+KK
Sbjct: 1   MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKK 60

Query: 61  GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATKXXXXXXXX 120
           GASEVFNDAKDAAESWSNWASA+ISKGLGLEEEGLKQTAHHMMD AGDA TK        
Sbjct: 61  GASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTK-------- 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVN 180
                                                                    CVN
Sbjct: 121 -------------------------AKETLVNGKEKAAKVYEAAKTEVEREVAAVKECVN 173

Query: 181 CEAAKEMASHAAVQIGAKIREKSSEL 207
           CEAAKEMASHAAVQIGAKIREKSSEL
Sbjct: 181 CEAAKEMASHAAVQIGAKIREKSSEL 173

[Close]

BLAST of Carg14154 vs. NCBI nr
Match: XP_023533965.1 (uncharacterized protein LOC111795650 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 212.2 bits (539), Expect = 1.6e-51
Identity = 189/206 (91.75%), Postives = 195/206 (94.66%), Query Frame = 0


Query: 1   MGTRTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK 60
           MGT TWSFVAVLWLL AAEMGVVEKCRG +G+GAM+DVKDNITEIMEMTN+EGKAEAVKK
Sbjct: 1   MGTSTWSFVAVLWLLLAAEMGVVEKCRGGMGRGAMEDVKDNITEIMEMTNLEGKAEAVKK 60

Query: 61  GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATKXXXXXXXX 120
           GASEVFNDAKDAAES SNWASA+I+KGLGLEEEGLKQTAHHMMD AGDAATKXXXXXXXX
Sbjct: 61  GASEVFNDAKDAAESLSNWASAEIAKGLGLEEEGLKQTAHHMMDKAGDAATKXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCVN 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 CEAAKEMASHAAVQIGAKIREKSSEL 207
             AAKE ASHAAVQIGAKIREKSSEL
Sbjct: 181 XXAAKERASHAAVQIGAKIREKSSEL 206

[Close]

BLAST of Carg14154 vs. NCBI nr
Match: XP_008452083.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 110.9 bits (276), Expect = 5.1e-21
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MGTRTWSF-VAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVK 60
           MG +T +  VAV+WL+      V EKC G  G+ A++DVKDN++EI E   ++ KAEAVK
Sbjct: 1   MGRKTATLVVAVVWLVL-----VAEKCSG-YGE-AVRDVKDNVSEIAEDAKLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATK 113
             ASEV++DAKD AESWSNWA  +ISKGLGL E+ LK+TAH++ D AGDAA K
Sbjct: 61  STASEVYSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKAGDAAIK 106

[Close]

BLAST of Carg14154 vs. NCBI nr
Match: XP_004146555.1 (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus] >KGN53305.1 hypothetical protein Csa_4G046680 [Cucumis sativus])

HSP 1 Score: 110.2 bits (274), Expect = 8.7e-21
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MGTRTWSF-VAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVK 60
           MG +T +  VAV+WL+      V EKC G  G+ A+KDVK+N++EI E  N++ KAEAVK
Sbjct: 1   MGRKTRTLVVAVVWLVL-----VAEKCSG-FGEEAVKDVKNNMSEIAEGANLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAA 111
             ASEV+ +AKD  ESWSNWA  +IS+GLGL EE +K+TAH++ D AGDAA
Sbjct: 61  SKASEVYTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAA 105

[Close]

BLAST of Carg14154 vs. TrEMBL
Match: tr|A0A1S3BT31|A0A1S3BT31_CUCME (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493195 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 65/113 (57.52%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 1   MGTRTWSF-VAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVK 60
           MG +T +  VAV+WL+      V EKC G  G+ A++DVKDN++EI E   ++ KAEAVK
Sbjct: 1   MGRKTATLVVAVVWLVL-----VAEKCSG-YGE-AVRDVKDNVSEIAEDAKLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAATK 113
             ASEV++DAKD AESWSNWA  +ISKGLGL E+ LK+TAH++ D AGDAA K
Sbjct: 61  STASEVYSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKAGDAAIK 106

[Close]

BLAST of Carg14154 vs. TrEMBL
Match: tr|A0A0A0KUJ5|A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.8e-21
Identity = 62/111 (55.86%), Postives = 81/111 (72.97%), Query Frame = 0


Query: 1   MGTRTWSF-VAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVK 60
           MG +T +  VAV+WL+      V EKC G  G+ A+KDVK+N++EI E  N++ KAEAVK
Sbjct: 1   MGRKTRTLVVAVVWLVL-----VAEKCSG-FGEEAVKDVKNNMSEIAEGANLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLAGDAA 111
             ASEV+ +AKD  ESWSNWA  +IS+GLGL EE +K+TAH++ D AGDAA
Sbjct: 61  SKASEVYTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAA 105

[Close]

BLAST of Carg14154 vs. TrEMBL
Match: tr|A0A1S3BSF4|A0A1S3BSF4_CUCME (late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC103493194 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 5.6e-16
Identity = 54/106 (50.94%), Postives = 72/106 (67.92%), Query Frame = 0


Query: 1   MGTRTWSFVAVLWLLWAAEMGVVEKCRGEIGQGAMKDVKDNITEIMEMTNIEGKAEAVKK 60
           MG +  + V  + LL    + V EKCRG+ G+ A++DVKD+++E  +   ++ KAEAVK 
Sbjct: 1   MGRKMMTLVVAVVLL----VLVAEKCRGD-GEDAVQDVKDSMSEFAKDAKLDEKAEAVKS 60

Query: 61  GASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMDLA 107
            ASEV++DAKD AESWSNWA  +ISKGLGL EE  K+ AH   D A
Sbjct: 61  TASEVYSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

[Close]

BLAST of Carg14154 vs. TrEMBL
Match: tr|A0A2R6S2H9|A0A2R6S2H9_ACTCH (Late embryogenesis abundant protein like OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc00999 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-06
Identity = 27/54 (50.00%), Postives = 38/54 (70.37%), Query Frame = 0


Query: 51  IEGKAEAVKKGASEVFNDAKDAAESWSNWASAQISKGLGLEEEGLKQTAHHMMD 105
           +   AE VK+GA+E   DAKD A+SWS+WA  + S+G G ++E  K+TAH +MD
Sbjct: 37  VNAAAENVKQGAAETVQDAKDTADSWSDWAIGKFSQGFGFDQEDAKETAHRIMD 90

The following BLAST results are available for this feature:

BLAST of Carg14154 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942848.1	3.1e-58	95.15	late embryogenesis abundant protein D-29-like [Cucurbita moschata]	[more]
XP_022983013.1	2.6e-57	63.11	late embryogenesis abundant protein D-29-like [Cucurbita maxima]	[more]
XP_023533965.1	1.6e-51	91.75	uncharacterized protein LOC111795650 [Cucurbita pepo subsp. pepo]	[more]
XP_008452083.1	5.1e-21	57.52	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]	[more]
XP_004146555.1	8.7e-21	55.86	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus] >KGN5...	[more]

BLAST of Carg14154 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg14154 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg14154 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BT31\|A0A1S3BT31_CUCME	3.4e-21	57.52	late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A0A0KUJ5\|A0A0A0KUJ5_CUCSA	5.8e-21	55.86	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G046680 PE=4 SV=1	[more]
tr\|A0A1S3BSF4\|A0A1S3BSF4_CUCME	5.6e-16	50.94	late embryogenesis abundant protein D-29-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
tr\|A0A2R6S2H9\|A0A2R6S2H9_ACTCH	3.1e-06	50.00	Late embryogenesis abundant protein like OS=Actinidia chinensis var. chinensis O...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg14154-RA	Carg14154-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 151..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg14154	Cla014584	Watermelon (97103) v1	carwmB0940
Carg14154	Csa4G046680	Cucumber (Chinese Long) v2	carcuB0958
Carg14154	MELO3C016385	Melon (DHL92) v3.5.1	carmeB0924
Carg14154	ClCG07G008530	Watermelon (Charleston Gray)	carwcgB0916
Carg14154	CSPI04G05460	Wild cucumber (PI 183967)	carcpiB0981
Carg14154	Cucsa.106520	Cucumber (Gy14) v1	carcgyB1059
Carg14154	CmaCh04G007560	Cucurbita maxima (Rimu)	carcmaB1288
Carg14154	CmaCh16G006200	Cucurbita maxima (Rimu)	carcmaB1286
Carg14154	CmoCh04G008060	Cucurbita moschata (Rifu)	carcmoB1259
Carg14154	CmoCh16G006750	Cucurbita moschata (Rifu)	carcmoB1258
Carg14154	Lsi07G002560	Bottle gourd (USVL1VR-Ls)	carlsiB859
Carg14154	Cp4.1LG14g01940	Cucurbita pepo (Zucchini)	carcpeB1301
Carg14154	Cp4.1LG01g06850	Cucurbita pepo (Zucchini)	carcpeB1303
Carg14154	CsGy4G005350	Cucumber (Gy14) v2	carcgybB0931
Carg14154	MELO3C016385.2	Melon (DHL92) v3.6.1	carmedB0930
Carg14154	CsaV3_4G005610	Cucumber (Chinese Long) v3	carcucB0982
Carg14154	Cla97C07G135560	Watermelon (97103) v2	carwmbB0989
Carg14154	Bhi01G001830	Wax gourd	carwgoB1087

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg14154	Carg05741	Silver-seed gourd	carcarB646

The following block(s) are covering this gene:


Gene	Organism	Block
Carg14154	Silver-seed gourd	carcarB602
Carg14154	Cucurbita maxima (Rimu)	carcmaB1289
Carg14154	Cucurbita pepo (Zucchini)	carcpeB1302
Carg14154	Cucurbita pepo (Zucchini)	carcpeB1304
Carg14154	Wild cucumber (PI 183967)	carcpiB0982
Carg14154	Watermelon (Charleston Gray)	carwcgB0915
Carg14154	Watermelon (97103) v1	carwmB0942
Carg14154	Watermelon (97103) v2	carwmbB0987
Carg14154	Wax gourd	carwgoB1086