Carg05741 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg05741
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Unknown protein
Location	Cucurbita_argyrosperma_scaffold_033 : 741149 .. 741903 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGTTGGTGGTGGTTCTGTTGGTGGCGGAGAGAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACAAAGGAAAGCGTAGCTGAAGCTGCTGAGAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGGAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGATGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGTAAGTTTACGTATTATTAAAATCTCCGAACACACACAAAAAAAAAAAAAAAAAAGTGAATATATGGCGGCGTGAGCTTATTGTAGTTGTCAGTGGGAATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGAAGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

mRNA sequence

ATGGCAAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGTTGGTGGTGGTTCTGTTGGTGGCGGAGAGAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACAAAGGAAAGCGTAGCTGAAGCTGCTGAGAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGGAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGATGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAATTGTCAGTGGGAATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGAAGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

Coding sequence (CDS)

ATGGCAAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGTTGGTGGTGGTTCTGTTGGTGGCGGAGAGAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACAAAGGAAAGCGTAGCTGAAGCTGCTGAGAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGGAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGATGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAATTGTCAGTGGGAATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGAAGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

Protein sequence

MARRMKSLAAVLWLVVVLLVAERSRGWAEETKDNVAEAASNAKDNVAEAASSAKESVSEAAEKAKLGEKAEAVKEGASEAYSNTKESVAEAAEKAKLGEKAEAVKEGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSNCQWEFGFKDEEVKETAPAKAEKAEEATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL

Homology

[Close]

BLAST of Carg05741 vs. NCBI nr
Match: XP_022929468.1 (methyl-CpG-binding domain-containing protein 10-like [Cucurbita moschata])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 214/222 (96.40%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MARRMKSLAAVLWLVVVLLVAERSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60
           MARRMKSLAAVLW+VVVLLVAERSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MARRMKSLAAVLWVVVVLLVAERSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSNCQWEFGFKDEEVKETAP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLS     FGFKDEEVKETAP
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSK---GFGFKDEEVKETAP 180

Query: 181 AKAEKAEEATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL 223
           AKAEKA+EATPKGGEAAKEVAGE PKHEHEHNPAEKEKTTEL
Sbjct: 181 AKAEKADEATPKGGEAAKEVAGETPKHEHEHNPAEKEKTTEL 219

[Close]

BLAST of Carg05741 vs. NCBI nr
Match: XP_023553199.1 (methyl-CpG-binding domain-containing protein 10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32
Identity = 213/222 (95.95%), Postives = 216/222 (97.30%), Query Frame = 0


Query: 1   MARRMKSLAAVLWLVVVLLVAERSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60
           MARRMKSL AVLW+VVVLLVAE+SRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MARRMKSLTAVLWVVVVLLVAEKSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSNCQWEFGFKDEEVKETAP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLS     FGFKDEEVKETAP
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSK---GFGFKDEEVKETAP 180

Query: 181 AKAEKAEEATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL 223
           AKAEKA+EATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL
Sbjct: 181 AKAEKADEATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL 219

[Close]

BLAST of Carg05741 vs. NCBI nr
Match: XP_022984817.1 (uncharacterized protein CG45076-like [Cucurbita maxima])

HSP 1 Score: 112.1 bits (279), Expect = 2.5e-21
Identity = 199/223 (89.24%), Postives = 202/223 (90.58%), Query Frame = 0


Query: 1   MARRMKSLAAVLWLVVVLLVAERSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60
           MARRMKSLAAVLW+VV+LLVAE+SRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MARRMKSLAAVLWVVVILLVAEKSRGWAEETKDNVAEAXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  XXXXXLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSNCQWEFGFKDEEVKETAP 180
           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLS     FGFKDEEVKETAP
Sbjct: 121 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSWSNWAYNKLSK---GFGFKDEEVKETAP 180

Query: 181 AKAEKAEEATPKGGEAAKEVAGEAPKHEHEH-NPAEKEKTTEL 223
           AKAE              EVAGE PKHEHEH NPAEKEKTTEL
Sbjct: 181 AKAEXXXXXXXXXXXXXXEVAGETPKHEHEHVNPAEKEKTTEL 220

The following BLAST results are available for this feature:

BLAST of Carg05741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022929468.1	1.4e-32	96.40	methyl-CpG-binding domain-containing protein 10-like [Cucurbita moschata]	[more]
XP_023553199.1	3.1e-32	95.95	methyl-CpG-binding domain-containing protein 10-like [Cucurbita pepo subsp. pepo...	[more]
XP_022984817.1	2.5e-21	89.24	uncharacterized protein CG45076-like [Cucurbita maxima]	[more]

BLAST of Carg05741 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg05741 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg05741 vs. TrEMBL


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg05741-RA	Carg05741-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 105..125
None	No IPR available	GENE3D	G3DSA:1.10.287.700		coord: 22..96 e-value: 1.2E-5 score: 27.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..222

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg05741	Cla014584	Watermelon (97103) v1	carwmB1018
Carg05741	Csa4G046680	Cucumber (Chinese Long) v2	carcuB1033
Carg05741	MELO3C016385	Melon (DHL92) v3.5.1	carmeB0992
Carg05741	ClCG07G008530	Watermelon (Charleston Gray)	carwcgB0999
Carg05741	CSPI04G05460	Wild cucumber (PI 183967)	carcpiB1057
Carg05741	Cucsa.106520	Cucumber (Gy14) v1	carcgyB1133
Carg05741	CmaCh16G006200	Cucurbita maxima (Rimu)	carcmaB1409
Carg05741	CmoCh16G006750	Cucurbita moschata (Rifu)	carcmoB1366
Carg05741	Lsi07G002560	Bottle gourd (USVL1VR-Ls)	carlsiB935
Carg05741	Cp4.1LG14g01940	Cucurbita pepo (Zucchini)	carcpeB1414
Carg05741	CsGy4G005350	Cucumber (Gy14) v2	carcgybB1005
Carg05741	MELO3C016385.2	Melon (DHL92) v3.6.1	carmedB1004
Carg05741	CsaV3_4G005610	Cucumber (Chinese Long) v3	carcucB1063

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg05741	Carg14154	Silver-seed gourd	carcarB646

The following block(s) are covering this gene:


Gene	Organism	Block
Carg05741	Cucurbita maxima (Rimu)	carcmaB1413
Carg05741	Cucurbita maxima (Rimu)	carcmaB1414
Carg05741	Cucurbita moschata (Rifu)	carcmoB1370
Carg05741	Cucurbita moschata (Rifu)	carcmoB1371
Carg05741	Cucurbita pepo (Zucchini)	carcpeB1412
Carg05741	Cucurbita pepo (Zucchini)	carcpeB1413
Carg05741	Cucurbita pepo (Zucchini)	carcpeB1418
Carg05741	Cucurbita pepo (Zucchini)	carcpeB1419
Carg05741	Wild cucumber (PI 183967)	carcpiB1058
Carg05741	Cucumber (Chinese Long) v2	carcuB1034
Carg05741	Cucumber (Chinese Long) v3	carcucB1068
Carg05741	Bottle gourd (USVL1VR-Ls)	carlsiB930
Carg05741	Melon (DHL92) v3.5.1	carmeB0994
Carg05741	Melon (DHL92) v3.6.1	carmedB1006
Carg05741	Watermelon (Charleston Gray)	carwcgB0993
Carg05741	Watermelon (97103) v1	carwmB1021
Carg05741	Watermelon (97103) v2	carwmbB1072
Carg05741	Watermelon (97103) v2	carwmbB1084
Carg05741	Wax gourd	carwgoB1193
Carg05741	Wax gourd	carwgoB1194
Carg05741	Silver-seed gourd	carcarB432
Carg05741	Cucumber (Gy14) v2	carcgybB1006