Cp4.1LG14g01940 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG14g01940
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG14 : 3337629 .. 3338631 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AGTACAAAGCAATTGCATTCGATTAAGTTTATTTCAGTGGCCGGAATCGGAATCGGAGTTACACGTATTTGAGAACAATGGCAAGGAGAATGAAGTCGTTGACGGCGGTTTTGTGGGTGGTGGTGGTTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACGAAGGAAAGCGTGGCTGAAGCGGCTGAGAAAGCGAAGCTTGGTGAAAAAGCTGAAGCCGTCAAGGAAGGGGCTTCAGAAGCTTATTCAAGTGCGAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCTGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGTAATTTTACGTATTATTAAAATCTCCGAACACAAAGGTTTTTTGTTTTGTTAACAATGGCGGCGTTATGTTTGTTTGGTCAGGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGACGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGACCTTTATTTTAAATAAATTGAGATTTTGATTTTGATATTTGTTTCTTTTTAGACTTTTGAATAAAATATTCCCTTTATGATTTTGATTTTGATTTGTGGGTACGTGAGTGTTATTGATCTTGATTTCAAGTGATACAAGATTGATTATTATTTATGCGACAC

mRNA sequence

AGTACAAAGCAATTGCATTCGATTAAGTTTATTTCAGTGGCCGGAATCGGAATCGGAGTTACACGTATTTGAGAACAATGGCAAGGAGAATGAAGTCGTTGACGGCGGTTTTGTGGGTGGTGGTGGTTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACGAAGGAAAGCGTGGCTGAAGCGGCTGAGAAAGCGAAGCTTGGTGAAAAAGCTGAAGCCGTCAAGGAAGGGGCTTCAGAAGCTTATTCAAGTGCGAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCTGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGACGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGACCTTTATTTTAAATAAATTGAGATTTTGATTTTGATATTTGTTTCTTTTTAGACTTTTGAATAAAATATTCCCTTTATGATTTTGATTTTGATTTGTGGGTACGTGAGTGTTATTGATCTTGATTTCAAGTGATACAAGATTGATTATTATTTATGCGACAC

Coding sequence (CDS)

ATGGCAAGGAGAATGAAGTCGTTGACGGCGGTTTTGTGGGTGGTGGTGGTTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAATGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGCGTATCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCTTATTCAAATACGAAGGAAAGCGTGGCTGAAGCGGCTGAGAAAGCGAAGCTTGGTGAAAAAGCTGAAGCCGTCAAGGAAGGGGCTTCAGAAGCTTATTCAAGTGCGAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCTGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCCAAGGCGGAGAAAGCAGACGAAGCCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGGCGCCCAAACACGAGCACGAGCATAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

Protein sequence

MARRMKSLTAVLWVVVVLLVAEKSRGWAEETKDNVAEAASNAKDNVAEAASSAKESVSEAAEKAKLGEKAEAVKEGASEAYSNTKESVAEAAEKAKLGEKAEAVKEGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKETAPAKAEKADEATPKGGEAAKEVAGEAPKHEHEHNPAEKEKTTEL
Homology
[Close]
BLAST of Cp4.1LG14g01940 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 101 AEAVKEGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE       EA    K N++E AE A L EKAEAVK  ASE Y +AKDK  SWSNWAYNK
Sbjct: 19  AEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKDKTESWSNWAYNK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKADEATPKGGEAAKEVAGEAPKHEHE 208
           +S+G G  +EE+KETA   A+KA +A  K  E     A +A  +  E
Sbjct: 79  ISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASE 125

[Close]
BLAST of Cp4.1LG14g01940 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 

Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV + AE+AKL EKAEAVK  ASE Y DAKDKA SWSNWAY+K+S G G
Sbjct: 26  GFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASEVYTDAKDKASSWSNWAYDKISAGLG 85

Query: 167 FKDE-EVKETAPAKAEK 183
             +E + KETAP  A+K
Sbjct: 86  LSEESKEKETAPNAADK 102

[Close]
BLAST of Cp4.1LG14g01940 vs. TrEMBL
Match: D7SPC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 8.0e-07
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1 

Query: 117 ENVAEAAEEA--KLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKE 176
           ENV E A+ A  K+  K E  K+ A EA  DAKDK GSW++WAY K ++GFG K E VKE
Sbjct: 25  ENVKEKADLAAGKVKLKVEEAKQTAEEAVQDAKDKGGSWADWAYEKFTEGFGAKQENVKE 84

Query: 177 TAPAKAEKADEATPKGGEAAKEVAGEAPKHEHE 208
            A    +KA +A  K  E     A EA ++  E
Sbjct: 85  GAQNMVDKAGDAASKATETMNSAASEASRYATE 117

[Close]
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 62/124 (50.00%), Postives = 76/124 (61.29%), Query Frame = 1 

Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV+E AE+AKL EKAEAVK  ASE Y+DAKDKA SWSNWAY+K+SKG G
Sbjct: 24  GYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASEVYSDAKDKAESWSNWAYDKISKGLG 83

Query: 167 FKDEEVKETAPAKAEKADEATPKGGEA-----------AKEVAGEAPKHEHEHNPAEKEK 220
             ++E+KETA   A+KA +A  K  E            A E AGEA K   E     K K
Sbjct: 84  LSEKELKETAHNVADKAGDAAIKTTEKINTAASGASNYASEKAGEAAKAASEAASNLKSK 143

[Close]
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-12
Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 1 

Query: 101 AEAVKEGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE       EA    K N++E AE A L EKAEAVK  ASE Y +AKDK  SWSNWAYNK
Sbjct: 19  AEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKDKTESWSNWAYNK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKADEATPKGGEAAKEVAGEAPKHEHE 208
           +S+G G  +EE+KETA   A+KA +A  K  E     A +A  +  E
Sbjct: 79  ISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASE 125

[Close]
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 9.0e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1 

Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV + AE+AKL EKAEAVK  ASE Y DAKDKA SWSNWAY+K+S G G
Sbjct: 26  GFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASEVYTDAKDKASSWSNWAYDKISAGLG 85

Query: 167 FKDE-EVKETAPAKAEK 183
             +E + KETAP  A+K
Sbjct: 86  LSEESKEKETAPNAADK 102

[Close]
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 77.4 bits (189), Expect = 3.4e-11
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 101 AEAVKEGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE  +    +A    K++++E A++AKL EKAEAVK  ASE Y+DAKDKA SWSNWAY+K
Sbjct: 19  AEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEVYSDAKDKAESWSNWAYDK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKA 184
           +SKG G  +EE KE A   A+KA
Sbjct: 79  ISKGLGLSEEESKEKAHDGADKA 101

[Close]
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match: gi|225430738|ref|XP_002266501.1| (PREDICTED: late embryogenesis abundant protein D-29 [Vitis vinifera])

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 1 

Query: 117 ENVAEAAEEA--KLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKE 176
           ENV E A+ A  K+  K E  K+ A EA  DAKDK GSW++WAY K ++GFG K E VKE
Sbjct: 25  ENVKEKADLAAGKVKLKVEEAKQTAEEAVQDAKDKGGSWADWAYEKFTEGFGAKQENVKE 84

Query: 177 TAPAKAEKADEATPKGGEAAKEVAGEAPKHEHE 208
            A    +KA +A  K  E     A EA ++  E
Sbjct: 85  GAQNMVDKAGDAASKATETMNSAASEASRYATE 117

The following BLAST results are available for this feature:
BLAST of Cp4.1LG14g01940 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01940 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUJ5_CUCSA4.8e-1249.53Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1[more]
A0A0A0KY19_CUCSA6.3e-1261.04Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1[more]
D7SPC8_VITVI8.0e-0746.24Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=... [more]
BLAST of Cp4.1LG14g01940 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG14g01940 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659102352|ref|XP_008452083.1|1.3e-1350.00PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
gi|449457638|ref|XP_004146555.1|6.9e-1249.53PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|449457538|ref|XP_004146505.1|9.0e-1261.04PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|659102350|ref|XP_008452082.1|3.4e-1155.42PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
gi|225430738|ref|XP_002266501.1|1.1e-0646.24PREDICTED: late embryogenesis abundant protein D-29 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG14g01940.1Cp4.1LG14g01940.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 105..125
scor

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG14g01940Cucsa.106520Cucumber (Gy14) v1cgycpeB0237
Cp4.1LG14g01940CmaCh16G006200Cucurbita maxima (Rimu)cmacpeB344
Cp4.1LG14g01940CmoCh04G008060Cucurbita moschata (Rifu)cmocpeB667
Cp4.1LG14g01940CmoCh16G006750Cucurbita moschata (Rifu)cmocpeB307
Cp4.1LG14g01940Cla014584Watermelon (97103) v1cpewmB218
Cp4.1LG14g01940Csa4G046680Cucumber (Chinese Long) v2cpecuB221
Cp4.1LG14g01940MELO3C016385Melon (DHL92) v3.5.1cpemeB196
Cp4.1LG14g01940ClCG07G008530Watermelon (Charleston Gray)cpewcgB210
Cp4.1LG14g01940CSPI04G05460Wild cucumber (PI 183967)cpecpiB223
Cp4.1LG14g01940Lsi07G002560Bottle gourd (USVL1VR-Ls)cpelsiB185
Cp4.1LG14g01940MELO3C016387.2Melon (DHL92) v3.6.1cpemedB238
Cp4.1LG14g01940CsaV3_4G005610Cucumber (Chinese Long) v3cpecucB0266
Cp4.1LG14g01940CsGy4G005350Cucumber (Gy14) v2cgybcpeB487
Cp4.1LG14g01940Carg14154Silver-seed gourdcarcpeB1301
Cp4.1LG14g01940Carg05741Silver-seed gourdcarcpeB1414
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG14g01940Cp4.1LG01g06850Cucurbita pepo (Zucchini)cpecpeB237
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG14g01940Wax gourdcpewgoB0289
Cp4.1LG14g01940Wax gourdcpewgoB0297
Cp4.1LG14g01940Cucurbita pepo (Zucchini)cpecpeB065
Cp4.1LG14g01940Cucurbita pepo (Zucchini)cpecpeB064
Cp4.1LG14g01940Cucurbita pepo (Zucchini)cpecpeB233
Cp4.1LG14g01940Cucurbita pepo (Zucchini)cpecpeB239
Cp4.1LG14g01940Cucurbita maxima (Rimu)cmacpeB714
Cp4.1LG14g01940Wild cucumber (PI 183967)cpecpiB231
Cp4.1LG14g01940Bottle gourd (USVL1VR-Ls)cpelsiB166
Cp4.1LG14g01940Melon (DHL92) v3.5.1cpemeB207
Cp4.1LG14g01940Cucumber (Gy14) v2cgybcpeB745
Cp4.1LG14g01940Melon (DHL92) v3.6.1cpemedB248
Cp4.1LG14g01940Silver-seed gourdcarcpeB0558
Cp4.1LG14g01940Cucumber (Chinese Long) v3cpecucB0280