CSPI04G05460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G05460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Late embryogenesis abundant
Location	Chr4 : 3719984 .. 3721028 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGAAAACGAGGACGTTAGTGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGAGAAATGCAGTGGGTTTGGTGAAGAAGCAGTAAAAGATGTGAAGAATAATATGAGTGAAATTGCGGAAGGTGCAAATCTTGATGAGAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGAGGCTAAGGACAAGACTGAGTCCTGGTCCAACTGGGCTTACAACAAGATTTCCAGGTAACACCTCTTTTTCTTCTTCTAATTTCTATTTTAATTCTGCTCTATTTTTGTTGATATAGAATCGTAAATCAAACAGAACTAAATGAAATGATCCATTCAAACATCGTTTTTTAGATTATATTACATTACAGAATCAGAAAAATTAAGATATTTTGCTTTTTTTTTAAAAATATGAATGGGTTAAATTTAAAACAGGGGATTAGGATTGAACGAAGAAGAAATAAAAGAGACCGCGCATAACGTAGCGGATAAAGCAGGGGATGCAGCCATTAAAACTACAGAAAAAATTAACACAGCAGCCTCAGGTAAAATTTGTATTAAAACAAAAAAATGAAAAATGAAAAACCCAAACCAATTACATATGTAGATTATTCAAATTAACGAAATCGTTAATGATGATCAGATGCATCTAATTACGCATCTGAGAAAGCGGGAGAGGCAGCGAAGGCGGCGTCGGAAGCGGCGAGCAAGCTGAAGAGCAAGTCGGAGGGTGTGGTGGGGCCGGCGGCGGAGAAGGTGAAAGAGACGCTGGTGAGCGGAGATGTATGAGGCGGCGAAGGAGAAGAAGAATGAGAACTGCGAAACGGCGAGAGAAATGGCGTCAAAGACGGCGGGGGAAATTGGGTGTAGGATTAGGGAGAAGAGTGCTGAGCTGTGAAGAAGTTGTTTTTGGTTTTGGGTTGAATTGTATTGATTTCGATTTTATTTTTCGGTCTAGAGACTGAGTTGTAATGGATGCTTTCGTTGGGATGTTTAATAAAATATTGGTTGATCGAAGTGGAGAAGTGTTTTTAGTTTCG

mRNA sequence

ATGGGGAGGAAAACGAGGACGTTAGTGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGAGAAATGCAGTGGGTTTGGTGAAGAAGCAGTAAAAGATGTGAAGAATAATATGAGTGAAATTGCGGAAGGTGCAAATCTTGATGAGAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGAGGCTAAGGACAAGACTGAGTCCTGGTCCAACTGGGCTTACAACAAGATTTCCAGGGGATTAGGATTGAACGAAGAAGAAATAAAAGAGACCGCGCATAACGTAGCGGATAAAGCAGGGGATGCAGCCATTAAAACTACAGAAAAAATTAACACAGCAGCCTCAGATGCATCTAATTACGCATCTGAGAAAGCGGGAGAGGCAGCGAAGGCGGCGTCGGAAGCGGCGAGCAAGCTGAAGAGCAAGTCGGAGGGTGTGGTGGGGCCGGCGGCGGAGAAGGTGAAAGAGACGCTGGTGAGCGGAGATGTATGA

Coding sequence (CDS)

ATGGGGAGGAAAACGAGGACGTTAGTGGTGGCGGTGGTATGGCTGGTGTTGGTGGCGGAGAAATGCAGTGGGTTTGGTGAAGAAGCAGTAAAAGATGTGAAGAATAATATGAGTGAAATTGCGGAAGGTGCAAATCTTGATGAGAAAGCCGAAGCTGTCAAATCTAAGGCTTCTGAAGTATACACCGAGGCTAAGGACAAGACTGAGTCCTGGTCCAACTGGGCTTACAACAAGATTTCCAGGGGATTAGGATTGAACGAAGAAGAAATAAAAGAGACCGCGCATAACGTAGCGGATAAAGCAGGGGATGCAGCCATTAAAACTACAGAAAAAATTAACACAGCAGCCTCAGATGCATCTAATTACGCATCTGAGAAAGCGGGAGAGGCAGCGAAGGCGGCGTCGGAAGCGGCGAGCAAGCTGAAGAGCAAGTCGGAGGGTGTGGTGGGGCCGGCGGCGGAGAAGGTGAAAGAGACGCTGGTGAGCGGAGATGTATGA

Homology

[Close]

BLAST of CSPI04G05460 vs. Swiss-Prot
Match: LEA29_GOSHI (Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.3e-06
Identity = 44/137 (32.12%), Postives = 67/137 (48.91%), Query Frame = 1


Query: 27  EEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKDKTESWSNWAYNKISRGLGL- 86
           ++A  ++K+     A    +    +  K +ASEV  EAK+ TESW+ WA  KIS GLG  
Sbjct: 55  QQAKDELKSKADHAAN--EVKSNTQQAKDRASEVGKEAKEYTESWTEWAKEKISEGLGFK 114

Query: 87  NEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASEKAGE----AAKAASEAASKL 146
            +++ K +     D   D A KT +K+   AS A  Y++ KA +    A K   +  +  
Sbjct: 115 QDDDPKGSVEKAFDSVADTATKTKDKLQDMASGAGEYSAGKAKDMKDTAYKKTDDVKNAA 174

Query: 147 KSKSEGVVGPAAEKVKE 159
           K KS  +     EK +E
Sbjct: 175 KGKSSEMRQATTEKARE 189

[Close]

BLAST of CSPI04G05460 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 4.2e-77
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60
           MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV
Sbjct: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60

Query: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 120
           YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS
Sbjct: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 120

Query: 121 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG 164
           NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG
Sbjct: 121 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG 163

[Close]

BLAST of CSPI04G05460 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.5e-29
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MGRKTRTLVVAV--VWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60
           MGRKT TL+VAV  VWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60

Query: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 101
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 102

[Close]

BLAST of CSPI04G05460 vs. TrEMBL
Match: D7SPC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.9e-16
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = 1


Query: 6   RTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAK 65
           R L++ V+WL +  E         +++VK   +++A G  +  K E  K  A E   +AK
Sbjct: 5   RALLMVVLWLAVSVEV-----RWCLENVKEK-ADLAAG-KVKLKVEEAKQTAEEAVQDAK 64

Query: 66  DKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASE 125
           DK  SW++WAY K + G G  +E +KE A N+ DKAGDAA K TE +N+AAS+AS YA+E
Sbjct: 65  DKGGSWADWAYEKFTEGFGAKQENVKEGAQNMVDKAGDAASKATETMNSAASEASRYATE 124

Query: 126 KAGEAAKAASEAASKLKS----KSEGVVGPAAEKVKE 159
           KAGEAA  ASE A   K+    K+E V+   ++K  +
Sbjct: 125 KAGEAANLASEKAGDAKNFASEKAEQVIRMTSDKAAD 154

[Close]

BLAST of CSPI04G05460 vs. TrEMBL
Match: U5GF96_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12410g PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.6e-15
Identity = 61/154 (39.61%), Postives = 93/154 (60.39%), Query Frame = 1


Query: 6   RTLVVAVVWLVLVAEKC-----SGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 65
           R +V  V+ +VL  E C     S   E+ ++  K  +S  AE A    KAE +K  A+E 
Sbjct: 77  RVVVTMVMVMVLWVEGCWCWSASSATEDLMESTKERVSLAAEDARA--KAEEMKHGAAET 136

Query: 66  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 125
             +A++K +SW+ WAY K + G+GL++E  ++ A N+ D+AGDAA KTT+ +N+ AS+ +
Sbjct: 137 MQDAEEKGKSWTGWAYEKFTDGIGLDQENARDGAQNLMDRAGDAASKTTDTMNSVASETA 196

Query: 126 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAE 155
            YAS+KAGEAA+ A E A  +K  +    G A +
Sbjct: 197 RYASQKAGEAAEMAHEKAGDIKDFASEKAGRAKQ 228

[Close]

BLAST of CSPI04G05460 vs. TrEMBL
Match: B9S6F3_RICCO (Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.0e-14
Identity = 60/161 (37.27%), Postives = 92/161 (57.14%), Query Frame = 1


Query: 8   LVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANL-----DEKAEAVKSKASEVYT 67
           + V V+W  + A+ C  F   +  + ++ M    E  NL      EKAE +K  A+E   
Sbjct: 9   MAVVVLWAAVYADVCWCFSSSS-SNTEDTMENAKETVNLMAGSAKEKAEDMKQGATEAMQ 68

Query: 68  EAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNY 127
           + K+  ESW++WAY K S G+GL +   +E A ++ D+AGDAA KTT+ +N+AA +AS Y
Sbjct: 69  DGKEAAESWTDWAYGKFSEGIGL-KGNAREAAEDLMDRAGDAASKTTDTMNSAAFEASRY 128

Query: 128 ASEKAGEAAKAASEAASKLK----SKSEGVVGPAAEKVKET 160
           ASEK G+AA +  E    +K     K++ V+  A ++  ET
Sbjct: 129 ASEKTGDAANSVYEKGGDMKDFASEKADQVIRMATDRASET 167

[Close]

BLAST of CSPI04G05460 vs. TAIR10
Match: AT4G36600.1 (AT4G36600.1 Late embryogenesis abundant (LEA) protein)

HSP 1 Score: 58.2 bits (139), Expect = 5.8e-09
Identity = 58/163 (35.58%), Postives = 80/163 (49.08%), Query Frame = 1


Query: 7   TLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKD 66
           T VV + W     ++C G+G E  +D+  N +E A+ A     AE  K  AS+   + KD
Sbjct: 7   TTVVTLTW----QKQCYGWGTETAEDMVRNEAEHAKNA-----AETAKKMASDAAHDTKD 66

Query: 67  KTESWSNWAYNKISRGLG---LNEEEIKETAHNVA-DKAGDAAIKTT-------EKINTA 126
           KT SW+ W  +KIS GLG      EE  E+A N A DKAG A            +K  +A
Sbjct: 67  KTASWAGWVSDKISTGLGGKKAEAEEAAESAKNYAYDKAGSAYDNAGYAKDFASDKAGSA 126

Query: 127 ---ASDASNYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEK 156
              A +A +YA +KAG+A   A +   + K  +    G A EK
Sbjct: 127 YDSAHNAKHYAYDKAGDAKDMAYDKTGQAKYMAYDKAGSAYEK 160

[Close]

BLAST of CSPI04G05460 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 295.4 bits (755), Expect = 6.1e-77
Identity = 163/163 (100.00%), Postives = 163/163 (100.00%), Query Frame = 1


Query: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60
           MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV
Sbjct: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60

Query: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 120
           YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS
Sbjct: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 120

Query: 121 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG 164
           NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG
Sbjct: 121 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG 163

[Close]

BLAST of CSPI04G05460 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 246.9 bits (629), Expect = 2.5e-62
Identity = 140/163 (85.89%), Postives = 151/163 (92.64%), Query Frame = 1


Query: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60
           MGRKT TLVVAVVWLVLVAEKCSG+GE AV+DVK+N+SEIAE A LDEKAEAVKS ASEV
Sbjct: 1   MGRKTATLVVAVVWLVLVAEKCSGYGE-AVRDVKDNVSEIAEDAKLDEKAEAVKSTASEV 60

Query: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDAS 120
           Y++AKDK ESWSNWAY+KIS+GLGL+E+E+KETAHNVADKAGDAAIKTTEKINTAAS AS
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKAGDAAIKTTEKINTAASGAS 120

Query: 121 NYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSG 164
           NYASEKAGEAAKAASEAAS LKSKS  VVG A EKVKETLVSG
Sbjct: 121 NYASEKAGEAAKAASEAASNLKSKSGDVVGTATEKVKETLVSG 162

[Close]

BLAST of CSPI04G05460 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.7e-31
Identity = 77/101 (76.24%), Postives = 88/101 (87.13%), Query Frame = 1


Query: 1   MGRKTRTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEV 60
           MGRK  TLVVAVV LVLVAEKC G GE+AV+DVK++MSE A+ A LDEKAEAVKS ASEV
Sbjct: 1   MGRKMMTLVVAVVLLVLVAEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEV 60

Query: 61  YTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKA 102
           Y++AKDK ESWSNWAY+KIS+GLGL+EEE KE AH+ ADKA
Sbjct: 61  YSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

[Close]

BLAST of CSPI04G05460 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 136.7 bits (343), Expect = 3.6e-29
Identity = 77/103 (74.76%), Postives = 89/103 (86.41%), Query Frame = 1


Query: 1   MGRKTRTLVVAV--VWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKAS 60
           MGRKT TL+VAV  VWLVLVA+KCSGF EEAV+D+K+N+ ++AE A LDEKAEAVKSKAS
Sbjct: 1   MGRKTMTLLVAVAVVWLVLVADKCSGF-EEAVQDMKDNVKQMAEDAKLDEKAEAVKSKAS 60

Query: 61  EVYTEAKDKTESWSNWAYNKISRGLGLNEE-EIKETAHNVADK 101
           EVYT+AKDK  SWSNWAY+KIS GLGL+EE + KETA N ADK
Sbjct: 61  EVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 102

[Close]

BLAST of CSPI04G05460 vs. NCBI nr
Match: gi|297735145|emb|CBI17507.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 2.7e-16
Identity = 66/157 (42.04%), Postives = 94/157 (59.87%), Query Frame = 1


Query: 6   RTLVVAVVWLVLVAEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAK 65
           R L++ V+WL +  E         +++VK   +++A G  +  K E  K  A E   +AK
Sbjct: 5   RALLMVVLWLAVSVEV-----RWCLENVKEK-ADLAAG-KVKLKVEEAKQTAEEAVQDAK 64

Query: 66  DKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASE 125
           DK  SW++WAY K + G G  +E +KE A N+ DKAGDAA K TE +N+AAS+AS YA+E
Sbjct: 65  DKGGSWADWAYEKFTEGFGAKQENVKEGAQNMVDKAGDAASKATETMNSAASEASRYATE 124

Query: 126 KAGEAAKAASEAASKLKS----KSEGVVGPAAEKVKE 159
           KAGEAA  ASE A   K+    K+E V+   ++K  +
Sbjct: 125 KAGEAANLASEKAGDAKNFASEKAEQVIRMTSDKAAD 154

The following BLAST results are available for this feature:

BLAST of CSPI04G05460 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LEA29_GOSHI	4.3e-06	32.12	Late embryogenesis abundant protein D-29 OS=Gossypium hirsutum PE=3 SV=1	[more]

BLAST of CSPI04G05460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUJ5_CUCSA	4.2e-77	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1	[more]
A0A0A0KY19_CUCSA	2.5e-29	74.76	Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1	[more]
D7SPC8_VITVI	1.9e-16	42.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=...	[more]
U5GF96_POPTR	1.6e-15	39.61	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12410g PE=4 SV=1	[more]
B9S6F3_RICCO	3.0e-14	37.27	Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 S...	[more]

BLAST of CSPI04G05460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36600.1	5.8e-09	35.58	Late embryogenesis abundant (LEA) protein	[more]

BLAST of CSPI04G05460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457638\|ref\|XP_004146555.1\|	6.1e-77	100.00	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]	[more]
gi\|659102352\|ref\|XP_008452083.1\|	2.5e-62	85.89	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]	[more]
gi\|659102350\|ref\|XP_008452082.1\|	1.7e-31	76.24	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]	[more]
gi\|449457538\|ref\|XP_004146505.1\|	3.6e-29	74.76	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]	[more]
gi\|297735145\|emb\|CBI17507.3\|	2.7e-16	42.04	unnamed protein product [Vitis vinifera]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G05460.1	CSPI04G05460.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G05460	Cla014584	Watermelon (97103) v1	cpiwmB313
CSPI04G05460	Csa4G046680	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G05460	MELO3C016385	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G05460	ClCG07G008530	Watermelon (Charleston Gray)	cpiwcgB342
CSPI04G05460	Lsi07G002560	Bottle gourd (USVL1VR-Ls)	cpilsiB303
CSPI04G05460	MELO3C016385.2	Melon (DHL92) v3.6.1	cpimedB301
CSPI04G05460	CsaV3_4G005610	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G05460	Cla97C07G135560	Watermelon (97103) v2	cpiwmbB332
CSPI04G05460	Bhi01G001830	Wax gourd	cpiwgoB369
CSPI04G05460	Cucsa.106520	Cucumber (Gy14) v1	cgycpiB130
CSPI04G05460	CmaCh04G007560	Cucurbita maxima (Rimu)	cmacpiB721
CSPI04G05460	CmaCh16G006200	Cucurbita maxima (Rimu)	cmacpiB342
CSPI04G05460	CmoCh16G006750	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G05460	CmoCh04G008060	Cucurbita moschata (Rifu)	cmocpiB715
CSPI04G05460	Cp4.1LG01g06850	Cucurbita pepo (Zucchini)	cpecpiB397
CSPI04G05460	Cp4.1LG14g01940	Cucurbita pepo (Zucchini)	cpecpiB223
CSPI04G05460	CsGy4G005350	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G05460	Carg05741	Silver-seed gourd	carcpiB1057
CSPI04G05460	Carg14154	Silver-seed gourd	carcpiB0981

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G05460	Watermelon (97103) v2	cpiwmbB275
CSPI04G05460	Watermelon (97103) v2	cpiwmbB318
CSPI04G05460	Wax gourd	cpiwgoB378
CSPI04G05460	Wax gourd	cpiwgoB428
CSPI04G05460	Wild cucumber (PI 183967)	cpicpiB109
CSPI04G05460	Wild cucumber (PI 183967)	cpicpiB163
CSPI04G05460	Cucumber (Gy14) v1	cgycpiB505
CSPI04G05460	Cucurbita maxima (Rimu)	cmacpiB675
CSPI04G05460	Cucurbita moschata (Rifu)	cmocpiB666
CSPI04G05460	Cucumber (Chinese Long) v2	cpicuB201
CSPI04G05460	Melon (DHL92) v3.5.1	cpimeB338
CSPI04G05460	Watermelon (Charleston Gray)	cpiwcgB300
CSPI04G05460	Watermelon (97103) v1	cpiwmB335
CSPI04G05460	Cucurbita pepo (Zucchini)	cpecpiB114
CSPI04G05460	Bottle gourd (USVL1VR-Ls)	cpilsiB252
CSPI04G05460	Melon (DHL92) v3.6.1	cpimedB328
CSPI04G05460	Cucumber (Gy14) v2	cgybcpiB279
CSPI04G05460	Silver-seed gourd	carcpiB0444
CSPI04G05460	Cucumber (Chinese Long) v3	cpicucB211
CSPI04G05460	Cucumber (Chinese Long) v3	cpicucB242