CmaCh04G007560 (gene) Cucurbita maxima (Rimu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATACTTTTCAGATCAAAAGGCAGCGATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGTAAATATTTGTTGTTTCTTGTTCCATGTTTTATTCTAAGTCAACAATGTCGTGACTTGGAACCACCCGAGTTTAGCCAAATTTTTAGGGGTTTTTATTTTATTTTTTTCTTTTGAATAATTTAGCCCTCAAAAATATTTATGTAGGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGAGCTTGACGCGCGGCTGTCTTTTTTGTATTGATTTTCATTTTATTTTATTTTTGGGTCTAGGCTGAGTTGTAAAATATTCATTATTGTTGATACTGTCTTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTAGTATAAGGTAAATATCTAATATTTGCCTTATTATCATAG ATACTTTTCAGATCAAAAGGCAGCGATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGAGCTTGACGCGCGGCTGTCTTTTTTGTATTGATTTTCATTTTATTTTATTTTTGGGTCTAGGCTGAGTTGTAAAATATTCATTATTGTTGATACTGTCTTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTAGTATAAGGTAAATATCTAATATTTGCCTTATTATCATAG ATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGA MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKKGASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKEKAAKVYEAAKTEVEREVAAVKECVNCEAAKEMASHAAVQIGAKIREKSSEL
BLAST of CmaCh04G007560 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1) HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26 Identity = 94/213 (44.13%), Postives = 120/213 (56.34%), Query Frame = 1
BLAST of CmaCh04G007560 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14 Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
BLAST of CmaCh04G007560 vs. TrEMBL
Match: U5GF96_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12410g PE=4 SV=1) HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06 Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1
BLAST of CmaCh04G007560 vs. TrEMBL
Match: B9S6F3_RICCO (Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06 Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1
BLAST of CmaCh04G007560 vs. TrEMBL
Match: D7SPC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1) HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06 Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 1
BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]) HSP 1 Score: 125.6 bits (314), Expect = 8.7e-26 Identity = 94/213 (44.13%), Postives = 120/213 (56.34%), Query Frame = 1
BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]) HSP 1 Score: 122.5 bits (306), Expect = 7.3e-25 Identity = 94/213 (44.13%), Postives = 121/213 (56.81%), Query Frame = 1
BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]) HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17 Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1
BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]) HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14 Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1
BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|566171006|ref|XP_006383189.1| (hypothetical protein POPTR_0005s12410g [Populus trichocarpa]) HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06 Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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