CmaCh04G007560 (gene) Cucurbita maxima (Rimu)

NameCmaCh04G007560
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionLate embryogenesis abundant
LocationCma_Chr04 : 3854313 .. 3855201 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATACTTTTCAGATCAAAAGGCAGCGATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGTAAATATTTGTTGTTTCTTGTTCCATGTTTTATTCTAAGTCAACAATGTCGTGACTTGGAACCACCCGAGTTTAGCCAAATTTTTAGGGGTTTTTATTTTATTTTTTTCTTTTGAATAATTTAGCCCTCAAAAATATTTATGTAGGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGAGCTTGACGCGCGGCTGTCTTTTTTGTATTGATTTTCATTTTATTTTATTTTTGGGTCTAGGCTGAGTTGTAAAATATTCATTATTGTTGATACTGTCTTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTAGTATAAGGTAAATATCTAATATTTGCCTTATTATCATAG

mRNA sequence

ATACTTTTCAGATCAAAAGGCAGCGATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGAGCTTGACGCGCGGCTGTCTTTTTTGTATTGATTTTCATTTTATTTTATTTTTGGGTCTAGGCTGAGTTGTAAAATATTCATTATTGTTGATACTGTCTTGTTAAGGATATTTAGTAATAAATTATAGTTTACCATATATATTATATTTGATATTTTAGTATAAGGTAAATATCTAATATTTGCCTTATTATCATAG

Coding sequence (CDS)

ATGGGGACAAGCACGTGGTCGTTTGTGGCGGTTTTGTGGCTGTTATGGGCGGTGGAGATGGGGGTGGTTGAAAAATGCAGGGGTGAAATAGGACAAGGAGCAGTGAAGGATGTGAAGGATAATATCACTGAAATTACGGAGATGGCGAATCTTGATGGAAAAGCAGAAGCCCTTAAGAAAGGTGCTTCTGAAGTGTTTAATGACGCCAAGGACGCGGCCGAGTCTTGGTCCAACTGGGCTTCTGCCGAGATTTCCAAGGGATTAGGATTGGAAGAAGAAGGATTGAAACAGACAGCCCACCACATGATGGACAAAGCCGGCGACGCGAAAACGAAGGCCAAAGAGACGCTTGTGAACGGGAAAGAGAAGGCGGCGAAGGTGTATGAGGCGGCTAAAACCGAGGTGGAGCGGGAAGTTGCGGCGGTTAAGGAGTGTGTGAACTGTGAAGCTGCTAAAGAGATGGCGTCGCATGCCGCCGTACAAATCGGGGCGAAGATAAGGGAGAAGTCCTCGGAGCTGTGA

Protein sequence

MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKKGASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKEKAAKVYEAAKTEVEREVAAVKECVNCEAAKEMASHAAVQIGAKIREKSSEL
BLAST of CmaCh04G007560 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 6.0e-26
Identity = 94/213 (44.13%), Postives = 120/213 (56.34%), Query Frame = 1

Query: 1   MGTSTWSFV-AVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALK 60
           MG  T + V AV+WL+      V EKC G  G+ AVKDVK+N++EI E ANLD KAEA+K
Sbjct: 1   MGRKTRTLVVAVVWLVL-----VAEKCSG-FGEEAVKDVKNNMSEIAEGANLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVN 120
             ASEV+ +AKD  ESWSNWA  +IS+GLGL EE +K+TAH++ DKAGDA  K  E +  
Sbjct: 61  SKASEVYTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINT 120

Query: 121 GKEKAA-----KVYEAAK--TEVEREVAAVKECV-------------------------- 174
               A+     K  EAAK  +E   ++ +  E V                          
Sbjct: 121 AASDASNYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSGKDKAAEMYEAA 180

BLAST of CmaCh04G007560 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 1   MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKK 60
           MG  T + +  + ++W V   V +KC G   + AV+D+KDN+ ++ E A LD KAEA+K 
Sbjct: 1   MGRKTMTLLVAVAVVWLVL--VADKCSGF--EEAVQDMKDNVKQMAEDAKLDEKAEAVKS 60

Query: 61  GASEVFNDAKDAAESWSNWASAEISKGLGLEEEGL-KQTAHHMMDK 106
            ASEV+ DAKD A SWSNWA  +IS GLGL EE   K+TA +  DK
Sbjct: 61  KASEVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 102

BLAST of CmaCh04G007560 vs. TrEMBL
Match: U5GF96_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12410g PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.4e-06
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1

Query: 5   TWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDG--KAEALKKGA 64
           T   V VLW         VE C       A +D+ ++  E   +A  D   KAE +K GA
Sbjct: 81  TMVMVMVLW---------VEGCWCWSASSATEDLMESTKERVSLAAEDARAKAEEMKHGA 140

Query: 65  SEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKE 124
           +E   DA++  +SW+ WA  + + G+GL++E  +  A ++MD+AGDA +K  +T+ +   
Sbjct: 141 AETMQDAEEKGKSWTGWAYEKFTDGIGLDQENARDGAQNLMDRAGDAASKTTDTMNSVAS 200

Query: 125 KAAKVYEAAKTEVEREVAAVKECVNCEAAKEMASHA 159
           + A+ Y + K     E+A  K     + A E A  A
Sbjct: 201 ETAR-YASQKAGEAAEMAHEKAGDIKDFASEKAGRA 226

BLAST of CmaCh04G007560 vs. TrEMBL
Match: B9S6F3_RICCO (Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.8e-06
Identity = 42/127 (33.07%), Postives = 70/127 (55.12%), Query Frame = 1

Query: 9   VAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEM--ANLDGKAEALKKGASEVF 68
           V  + +LWA     V  C         +D  +N  E   +   +   KAE +K+GA+E  
Sbjct: 8   VMAVVVLWAAVYADVCWCFSSSSSNT-EDTMENAKETVNLMAGSAKEKAEDMKQGATEAM 67

Query: 69  NDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKEKAAK 128
            D K+AAESW++WA  + S+G+GL+    ++ A  +MD+AGDA +K  +T+ +   +A++
Sbjct: 68  QDGKEAAESWTDWAYGKFSEGIGLKGNA-REAAEDLMDRAGDAASKTTDTMNSAAFEASR 127

Query: 129 VYEAAKT 134
            Y + KT
Sbjct: 128 -YASEKT 131

BLAST of CmaCh04G007560 vs. TrEMBL
Match: D7SPC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 9.1e-06
Identity = 51/166 (30.72%), Postives = 84/166 (50.60%), Query Frame = 1

Query: 9   VAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMA--NLDGKAEALKKGASEVF 68
           + VLWL  +VE               V+   +N+ E  ++A   +  K E  K+ A E  
Sbjct: 9   MVVLWLAVSVE---------------VRWCLENVKEKADLAAGKVKLKVEEAKQTAEEAV 68

Query: 69  NDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKEKAAK 128
            DAKD   SW++WA  + ++G G ++E +K+ A +M+DKAGDA +KA ET+ +   +A++
Sbjct: 69  QDAKDKGGSWADWAYEKFTEGFGAKQENVKEGAQNMVDKAGDAASKATETMNSAASEASR 128

Query: 129 VYEAAKTEVEREVAAVKECVNCEAAKEMASHAAVQIGAKIREKSSE 173
            Y   K      +A+ K       AK  AS  A Q+     +K+++
Sbjct: 129 -YATEKAGEAANLASEK----AGDAKNFASEKAEQVIRMTSDKAAD 154

BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 8.7e-26
Identity = 94/213 (44.13%), Postives = 120/213 (56.34%), Query Frame = 1

Query: 1   MGTSTWSFV-AVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALK 60
           MG  T + V AV+WL+      V EKC G  G+ AVKDVK+N++EI E ANLD KAEA+K
Sbjct: 1   MGRKTRTLVVAVVWLVL-----VAEKCSG-FGEEAVKDVKNNMSEIAEGANLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVN 120
             ASEV+ +AKD  ESWSNWA  +IS+GLGL EE +K+TAH++ DKAGDA  K  E +  
Sbjct: 61  SKASEVYTEAKDKTESWSNWAYNKISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINT 120

Query: 121 GKEKAA-----KVYEAAK--TEVEREVAAVKECV-------------------------- 174
               A+     K  EAAK  +E   ++ +  E V                          
Sbjct: 121 AASDASNYASEKAGEAAKAASEAASKLKSKSEGVVGPAAEKVKETLVSGKDKAAEMYEAA 180

BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 122.5 bits (306), Expect = 7.3e-25
Identity = 94/213 (44.13%), Postives = 121/213 (56.81%), Query Frame = 1

Query: 1   MGTSTWSFV-AVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALK 60
           MG  T + V AV+WL+      V EKC G  G+ AV+DVKDN++EI E A LD KAEA+K
Sbjct: 1   MGRKTATLVVAVVWLVL-----VAEKCSG-YGE-AVRDVKDNVSEIAEDAKLDEKAEAVK 60

Query: 61  KGASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKE---T 120
             ASEV++DAKD AESWSNWA  +ISKGLGL E+ LK+TAH++ DKAGDA  K  E   T
Sbjct: 61  STASEVYSDAKDKAESWSNWAYDKISKGLGLSEKELKETAHNVADKAGDAAIKTTEKINT 120

Query: 121 LVNGKE--------KAAKVYEAAKTEVEREVAAV-------------------------- 174
             +G          +AAK    A + ++ +   V                          
Sbjct: 121 AASGASNYASEKAGEAAKAASEAASNLKSKSGDVVGTATEKVKETLVSGKDKAAEVYEAA 180

BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 98.6 bits (244), Expect = 1.1e-17
Identity = 58/106 (54.72%), Postives = 73/106 (68.87%), Query Frame = 1

Query: 1   MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKK 60
           MG    + V  + LL    + V EKCRG+ G+ AV+DVKD+++E  + A LD KAEA+K 
Sbjct: 1   MGRKMMTLVVAVVLL----VLVAEKCRGD-GEDAVQDVKDSMSEFAKDAKLDEKAEAVKS 60

Query: 61  GASEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKA 107
            ASEV++DAKD AESWSNWA  +ISKGLGL EE  K+ AH   DKA
Sbjct: 61  TASEVYSDAKDKAESWSNWAYDKISKGLGLSEEESKEKAHDGADKA 101

BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 4.5e-14
Identity = 52/106 (49.06%), Postives = 69/106 (65.09%), Query Frame = 1

Query: 1   MGTSTWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDGKAEALKK 60
           MG  T + +  + ++W V   V +KC G   + AV+D+KDN+ ++ E A LD KAEA+K 
Sbjct: 1   MGRKTMTLLVAVAVVWLVL--VADKCSGF--EEAVQDMKDNVKQMAEDAKLDEKAEAVKS 60

Query: 61  GASEVFNDAKDAAESWSNWASAEISKGLGLEEEGL-KQTAHHMMDK 106
            ASEV+ DAKD A SWSNWA  +IS GLGL EE   K+TA +  DK
Sbjct: 61  KASEVYTDAKDKASSWSNWAYDKISAGLGLSEESKEKETAPNAADK 102

BLAST of CmaCh04G007560 vs. NCBI nr
Match: gi|566171006|ref|XP_006383189.1| (hypothetical protein POPTR_0005s12410g [Populus trichocarpa])

HSP 1 Score: 61.2 bits (147), Expect = 2.0e-06
Identity = 49/156 (31.41%), Postives = 78/156 (50.00%), Query Frame = 1

Query: 5   TWSFVAVLWLLWAVEMGVVEKCRGEIGQGAVKDVKDNITEITEMANLDG--KAEALKKGA 64
           T   V VLW         VE C       A +D+ ++  E   +A  D   KAE +K GA
Sbjct: 81  TMVMVMVLW---------VEGCWCWSASSATEDLMESTKERVSLAAEDARAKAEEMKHGA 140

Query: 65  SEVFNDAKDAAESWSNWASAEISKGLGLEEEGLKQTAHHMMDKAGDAKTKAKETLVNGKE 124
           +E   DA++  +SW+ WA  + + G+GL++E  +  A ++MD+AGDA +K  +T+ +   
Sbjct: 141 AETMQDAEEKGKSWTGWAYEKFTDGIGLDQENARDGAQNLMDRAGDAASKTTDTMNSVAS 200

Query: 125 KAAKVYEAAKTEVEREVAAVKECVNCEAAKEMASHA 159
           + A+ Y + K     E+A  K     + A E A  A
Sbjct: 201 ETAR-YASQKAGEAAEMAHEKAGDIKDFASEKAGRA 226

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KUJ5_CUCSA6.0e-2644.13Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1[more]
A0A0A0KY19_CUCSA3.1e-1449.06Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1[more]
U5GF96_POPTR1.4e-0631.41Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s12410g PE=4 SV=1[more]
B9S6F3_RICCO1.8e-0633.07Late embryogenesis abundant, putative OS=Ricinus communis GN=RCOM_0536090 PE=4 S... [more]
D7SPC8_VITVI9.1e-0630.72Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|449457638|ref|XP_004146555.1|8.7e-2644.13PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|659102352|ref|XP_008452083.1|7.3e-2544.13PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
gi|659102350|ref|XP_008452082.1|1.1e-1754.72PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo][more]
gi|449457538|ref|XP_004146505.1|4.5e-1449.06PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus][more]
gi|566171006|ref|XP_006383189.1|2.0e-0631.41hypothetical protein POPTR_0005s12410g [Populus trichocarpa][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh04G007560.1CmaCh04G007560.1mRNA


Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 118..138
scor

The following gene(s) are paralogous to this gene:

None