CmaCh16G006200 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh16G006200
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Late embryogenesis abundant
Location	Cma_Chr16 : 3202210 .. 3203177 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGTAATTTTACGTATTATTAAAATCTCCGAAGCAACAAGGTTTTTTGTTTTGTTAATAATGGTGGCGTTATATTTGTTTGGTCAGGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGCCCTTTATTTTAAATAAATCGAGATTTTGATTTTGATTTTTTTTTTTCCTTTTTAGATTGTGTTGAATAAAATATTCCCTTTGTGATTTTGATTTTAATTTGTGGGCTTGTGAGTGTTATCCATCTTGATTTAAAGTGATACTAAAATGGAAATGGAAAGCATTGGTTACTTAACGTCGAGATGCTTTCGATGATTAGTGC

mRNA sequence

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGAGCATAACACATGGATTTTTGCCCTTTATTTTAAATAAATCGAGATTTTGATTTTGATTTTTTTTTTTCCTTTTTAGATTGTGTTGAATAAAATATTCCCTTTGTGATTTTGATTTTAATTTGTGGGCTTGTGAGTGTTATCCATCTTGATTTAAAGTGATACTAAAATGGAAATGGAAAGCATTGGTTACTTAACGTCGAGATGCTTTCGATGATTAGTGC

Coding sequence (CDS)

ATGGCTAGGAGAATGAAGTCGTTGGCGGCGGTTTTGTGGGTGGTGGTGATTCTGTTGGTGGCGGAGAAAAGCAGGGGATGGGCTGAAGAAACAAAGGACAATGTAGCCGAAGCTGCTTCCAACGCAAAGGACAATGTAGCCGAAGCTGCTTCCAGCGCAAAGGAAAGTGTAGCCGAAGCTGCTGAAAAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTAAAGGAAGGGGCTTCAGAAGCGTATTCAAATACGAAGGAAAGCGTAGCTGAAGCGGCTGAAAAAGCGAAGCTTGGTGAAAAAGCCGAAGCCGTAAAGAAAGGGGCTTCCGAAGCTTATTCAAGTGCAAAGGAAAACGTAGCTGAAGCGGCTGAAGAAGCGAAGCTTGGTGAGAAAGCCGAAGCCGTGAAGAAAGGGGCTTCCGAAGCTTATAACGACGCTAAGGACAAGGCTGGGTCTTGGTCCAATTGGGCATACAACAAGCTTTCCAAGGGATTCGGGTTTAAAGATGAAGAAGTGAAGGAGACAGCCCCCGCTAAGGCGGAGAAAGCAGACGAAACCACACCCAAAGGCGGAGAAGCGGCGAAGGAAGTGGCCGGCGAGACGCCCAAACACGAGCACGAGCATGTAAATCCGGCGGAGAAGGAGAAGACCACCGAGCTCTGA

Protein sequence

MARRMKSLAAVLWVVVILLVAEKSRGWAEETKDNVAEAASNAKDNVAEAASSAKESVAEAAEKAKLGEKAEAVKEGASEAYSNTKESVAEAAEKAKLGEKAEAVKKGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKETAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPAEKEKTTEL

Homology

[Close]

BLAST of CmaCh16G006200 vs. TrEMBL
Match: A0A0A0KY19_CUCSA (Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.8e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV + AE+AKL EKAEAVK  ASE Y DAKDKA SWSNWAY+K+S G G
Sbjct: 26  GFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASEVYTDAKDKASSWSNWAYDKISAGLG 85

Query: 167 FKDE-EVKETAPAKAEK 183
             +E + KETAP  A+K
Sbjct: 86  LSEESKEKETAPNAADK 102

[Close]

BLAST of CmaCh16G006200 vs. TrEMBL
Match: A0A0A0KUJ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.3e-12
Identity = 53/114 (46.49%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 101 AEAVKKGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE       EA    K N++E AE A L EKAEAVK  ASE Y +AKDK  SWSNWAYNK
Sbjct: 19  AEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKDKTESWSNWAYNK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPAEK 215
           +S+G G  +EE+KETA   A+KA +   K  E     A +   +  E    A K
Sbjct: 79  ISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASEKAGEAAK 132

[Close]

BLAST of CmaCh16G006200 vs. TrEMBL
Match: D7SPC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-06
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 117 ENVAEAAEEA--KLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKE 176
           ENV E A+ A  K+  K E  K+ A EA  DAKDK GSW++WAY K ++GFG K E VKE
Sbjct: 25  ENVKEKADLAAGKVKLKVEEAKQTAEEAVQDAKDKGGSWADWAYEKFTEGFGAKQENVKE 84

Query: 177 TAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPA 213
            A    +KA +   K  E     A E  ++  E    A
Sbjct: 85  GAQNMVDKAGDAASKATETMNSAASEASRYATEKAGEA 122

[Close]

BLAST of CmaCh16G006200 vs. NCBI nr
Match: gi|659102352|ref|XP_008452083.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 85.5 bits (210), Expect = 1.3e-13
Identity = 55/108 (50.93%), Postives = 67/108 (62.04%), Query Frame = 1


Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV+E AE+AKL EKAEAVK  ASE Y+DAKDKA SWSNWAY+K+SKG G
Sbjct: 24  GYGEAVRDVKDNVSEIAEDAKLDEKAEAVKSTASEVYSDAKDKAESWSNWAYDKISKGLG 83

Query: 167 FKDEEVKETAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPAEK 215
             ++E+KETA   A+KA +   K  E     A     +  E    A K
Sbjct: 84  LSEKELKETAHNVADKAGDAAIKTTEKINTAASGASNYASEKAGEAAK 131

[Close]

BLAST of CmaCh16G006200 vs. NCBI nr
Match: gi|449457538|ref|XP_004146505.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 6.9e-12
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 107 GASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFG 166
           G  EA    K+NV + AE+AKL EKAEAVK  ASE Y DAKDKA SWSNWAY+K+S G G
Sbjct: 26  GFEEAVQDMKDNVKQMAEDAKLDEKAEAVKSKASEVYTDAKDKASSWSNWAYDKISAGLG 85

Query: 167 FKDE-EVKETAPAKAEK 183
             +E + KETAP  A+K
Sbjct: 86  LSEESKEKETAPNAADK 102

[Close]

BLAST of CmaCh16G006200 vs. NCBI nr
Match: gi|449457638|ref|XP_004146555.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 9.1e-12
Identity = 53/114 (46.49%), Postives = 64/114 (56.14%), Query Frame = 1


Query: 101 AEAVKKGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE       EA    K N++E AE A L EKAEAVK  ASE Y +AKDK  SWSNWAYNK
Sbjct: 19  AEKCSGFGEEAVKDVKNNMSEIAEGANLDEKAEAVKSKASEVYTEAKDKTESWSNWAYNK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPAEK 215
           +S+G G  +EE+KETA   A+KA +   K  E     A +   +  E    A K
Sbjct: 79  ISRGLGLNEEEIKETAHNVADKAGDAAIKTTEKINTAASDASNYASEKAGEAAK 132

[Close]

BLAST of CmaCh16G006200 vs. NCBI nr
Match: gi|659102350|ref|XP_008452082.1| (PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 2.0e-11
Identity = 46/83 (55.42%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 101 AEAVKKGASEAYSSAKENVAEAAEEAKLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNK 160
           AE  +    +A    K++++E A++AKL EKAEAVK  ASE Y+DAKDKA SWSNWAY+K
Sbjct: 19  AEKCRGDGEDAVQDVKDSMSEFAKDAKLDEKAEAVKSTASEVYSDAKDKAESWSNWAYDK 78

Query: 161 LSKGFGFKDEEVKETAPAKAEKA 184
           +SKG G  +EE KE A   A+KA
Sbjct: 79  ISKGLGLSEEESKEKAHDGADKA 101

[Close]

BLAST of CmaCh16G006200 vs. NCBI nr
Match: gi|225430738|ref|XP_002266501.1| (PREDICTED: late embryogenesis abundant protein D-29 [Vitis vinifera])

HSP 1 Score: 61.2 bits (147), Expect = 2.6e-06
Identity = 42/98 (42.86%), Postives = 53/98 (54.08%), Query Frame = 1


Query: 117 ENVAEAAEEA--KLGEKAEAVKKGASEAYNDAKDKAGSWSNWAYNKLSKGFGFKDEEVKE 176
           ENV E A+ A  K+  K E  K+ A EA  DAKDK GSW++WAY K ++GFG K E VKE
Sbjct: 25  ENVKEKADLAAGKVKLKVEEAKQTAEEAVQDAKDKGGSWADWAYEKFTEGFGAKQENVKE 84

Query: 177 TAPAKAEKADETTPKGGEAAKEVAGETPKHEHEHVNPA 213
            A    +KA +   K  E     A E  ++  E    A
Sbjct: 85  GAQNMVDKAGDAASKATETMNSAASEASRYATEKAGEA 122

The following BLAST results are available for this feature:

BLAST of CmaCh16G006200 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh16G006200 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY19_CUCSA	4.8e-12	61.04	Late embryogenesis abundant OS=Cucumis sativus GN=Csa_4G046700 PE=4 SV=1	[more]
A0A0A0KUJ5_CUCSA	6.3e-12	46.49	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G046680 PE=4 SV=1	[more]
D7SPC8_VITVI	1.8e-06	42.86	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g01890 PE=4 SV=...	[more]

BLAST of CmaCh16G006200 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh16G006200 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659102352\|ref\|XP_008452083.1\|	1.3e-13	50.93	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]	[more]
gi\|449457538\|ref\|XP_004146505.1\|	6.9e-12	61.04	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]	[more]
gi\|449457638\|ref\|XP_004146555.1\|	9.1e-12	46.49	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis sativus]	[more]
gi\|659102350\|ref\|XP_008452082.1\|	2.0e-11	55.42	PREDICTED: late embryogenesis abundant protein D-29-like [Cucumis melo]	[more]
gi\|225430738\|ref\|XP_002266501.1\|	2.6e-06	42.86	PREDICTED: late embryogenesis abundant protein D-29 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh16G006200.1	CmaCh16G006200.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 105..125 scor

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh16G006200	Cucsa.106520	Cucumber (Gy14) v1	cgycmaB0245
CmaCh16G006200	Cla014584	Watermelon (97103) v1	cmawmB307
CmaCh16G006200	Csa4G046680	Cucumber (Chinese Long) v2	cmacuB337
CmaCh16G006200	MELO3C016385	Melon (DHL92) v3.5.1	cmameB301
CmaCh16G006200	ClCG07G008530	Watermelon (Charleston Gray)	cmawcgB301
CmaCh16G006200	CSPI04G05460	Wild cucumber (PI 183967)	cmacpiB342
CmaCh16G006200	CmoCh16G006750	Cucurbita moschata (Rifu)	cmacmoB322
CmaCh16G006200	Cp4.1LG14g01940	Cucurbita pepo (Zucchini)	cmacpeB344
CmaCh16G006200	MELO3C016387.2	Melon (DHL92) v3.6.1	cmamedB350
CmaCh16G006200	CsaV3_4G005610	Cucumber (Chinese Long) v3	cmacucB0393
CmaCh16G006200	Cla97C07G135560	Watermelon (97103) v2	cmawmbB351
CmaCh16G006200	CsGy4G005350	Cucumber (Gy14) v2	cgybcmaB498
CmaCh16G006200	Carg05741	Silver-seed gourd	carcmaB1409
CmaCh16G006200	Carg14154	Silver-seed gourd	carcmaB1286

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh16G006200	Cucurbita moschata (Rifu)	cmacmoB336
CmaCh16G006200	Cucurbita moschata (Rifu)	cmacmoB337
CmaCh16G006200	Wild cucumber (PI 183967)	cmacpiB349
CmaCh16G006200	Cucumber (Chinese Long) v2	cmacuB345
CmaCh16G006200	Melon (DHL92) v3.5.1	cmameB310
CmaCh16G006200	Watermelon (Charleston Gray)	cmawcgB291
CmaCh16G006200	Watermelon (97103) v1	cmawmB321
CmaCh16G006200	Cucurbita pepo (Zucchini)	cmacpeB350
CmaCh16G006200	Cucurbita pepo (Zucchini)	cmacpeB354
CmaCh16G006200	Bottle gourd (USVL1VR-Ls)	cmalsiB305
CmaCh16G006200	Bottle gourd (USVL1VR-Ls)	cmalsiB326
CmaCh16G006200	Cucumber (Gy14) v2	cgybcmaB748
CmaCh16G006200	Melon (DHL92) v3.6.1	cmamedB361
CmaCh16G006200	Silver-seed gourd	carcmaB0561
CmaCh16G006200	Cucumber (Chinese Long) v3	cmacucB0410
CmaCh16G006200	Watermelon (97103) v2	cmawmbB327
CmaCh16G006200	Wax gourd	cmawgoB0432
CmaCh16G006200	Wax gourd	cmawgoB0441
CmaCh16G006200	Cucurbita maxima (Rimu)	cmacmaB349
CmaCh16G006200	Cucurbita maxima (Rimu)	cmacmaB350