Carg13143 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13143
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	glycine-rich protein A3-like
Location	Cucurbita_argyrosperma_scaffold_101 : 582047 .. 583346 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGTATTTATCCTATTTTTACATATAATCGTCTGGAAAACTTGTTAGATCATTAGTTCGTTATTTTTATTAAGTAAGGTTTATAATTTCGATTACCTCGACCGAAAGCTGCTGTAAGCAACAGAATTGTTTTGAAGCAAAACTTCAGTAAAATTTCCCAGGAACATTGGAGTATCCTAATCCTGTTTATGGTTAGATTGCATAACTTTTATACAGTTACTGATTCCAAATATTCTTAAATGCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGATTTTTCTGCCATCACATTTCACCACCGACCCTTCTTCTTCAGTGGCTTCCAAGAATGGCCTCGGTACAGATGGTAGGGTACCATCTTCTTCTCTAATCCCTGTTATGTCCAGAGAACTTTGGATGTTGTTATTTTACTCTTGTTATCTTAACTGCTGTTTAATGCCTTCTGTACTCTGCTTCTGGACATCAATAATCTGGATCTTTTTTCGTTTTCTTGTCGACCTCTTTCTTTCAATTTCCCATTTTTTTTTGGATATGAGAACTGGGTCGAAACGAAAGATAGAGAATGGGAATTTTGGGCCCAACACTTGCGTGATTGGGGTATTGGGTCATGTATTTTGAATATGTTTTAATTGAATTAGAAATTATGTGTGGACATCATCATCGTAATGGAGTTTCTTATTCAAGATCGTTTCAACTGAGGAGGGGGACCAGGAAGTTTTCGTATAAAACTATGGTGGTAGGTCTCCTGATGAGAGTGCGAACTTCCTTGTCAGGTAAGTTCCAACCCGCACGAAACATCATAAATCCAGACAAAGA

mRNA sequence

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGATTTTTCTGCCATCACATTTCACCACCGACCCTTCTTCTTCAGTGGCTTCCAAGAATGGCCTCGGTACAGATGGTAGGGTACCATCTTCTTCTCTAATCCCTGTTATGTCCAGAGAACTTTGGATGTTGTTATTTTACTCTTGTTATCTTAACTGCTGTTTAATGCCTTCTGTACTCTGCTTCTGGACATCAATAATCTGGATCTTTTTTCGTTTTCTTGTCGACCTCTTTCTTTCAATTTCCCATTTTTTTTTGGATATGAGAACTGGGTCGAAACGAAAGATAGAGAATGGGAATTTTGGGCCCAACACTTGCGTGATTGGGGTATTGGGTCATGTATTTTGAATATGTTTTAATTGAATTAGAAATTATGTGTGGACATCATCATCGTAATGGAGTTTCTTATTCAAGATCGTTTCAACTGAGGAGGGGGACCAGGAAGTTTTCGTATAAAACTATGGTGGTAGGTCTCCTGATGAGAGTGCGAACTTCCTTGTCAGGTAAGTTCCAACCCGCACGAAACATCATAAATCCAGACAAAGA

Coding sequence (CDS)

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGCCGGATATCCTCCTCCTGGGGGATATCCTCCGCCTGGAGGGTATCCACCACCTGGAGGGTATCCACCACCTGGAGGGTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCCGCCCAAGGTTACCCCCCAGCTGGCTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGCCACGGTGTAGCAGGAATGCTGGCAGGTGGTGCTGCCGCTGCAGCAGCTGCATATGGAGCTCACCATGTCGCCCATGGTGCTGGTCATTACCCCCACGGCGTTGCTCAATATGGTCATGGTCATGGTTATGGTCATGGTCATGGTCATGGTGGAAAATTCAAGCACCATGGAAAGTTCAAGCAGGGGAAGTTTGGGAAGCACAAACATGGGAAGCATGGTGGTGGCAAATTCAAGAAGTGGAAGTGA

Protein sequence

MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPPGGYPPPGGYPPPGGYPPPGGYPPSHGYPPQGYPPAQGYPPAGYPPGAYPGPSAPHHSGHGVAGMLAGGAAAAAAAYGAHHVAHGAGHYPHGVAQYGHGHGYGHGHGHGGKFKHHGKFKQGKFGKHKHGKHGGGKFKKWK

Homology

[Close]

BLAST of Carg13143 vs. NCBI nr
Match: XP_022942872.1 (glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 99
          XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA
Sbjct: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 98

[Close]

BLAST of Carg13143 vs. NCBI nr
Match: XP_022983060.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 99
          XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA
Sbjct: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 98

[Close]

BLAST of Carg13143 vs. NCBI nr
Match: XP_023515197.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 82.0 bits (201), Expect = 2.1e-12
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPPXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60

Query: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 99
          XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA
Sbjct: 61 XXXXXXXXXXXXXXXXXXXXXXXSAPHHSGHGVAGMLA 98

[Close]

BLAST of Carg13143 vs. NCBI nr
Match: XP_004150942.2 (PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_4G056610 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of Carg13143 vs. NCBI nr
Match: XP_008451874.1 (PREDICTED: glycine-rich protein A3-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 3.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of Carg13143 vs. TrEMBL
Match: tr|A0A1S3BRX9|A0A1S3BRX9_CUCME (glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of Carg13143 vs. TrEMBL
Match: tr|A0A0A0KV55|A0A0A0KV55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 2.1e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of Carg13143 vs. TrEMBL
Match: tr|B4FV89|B4FV89_MAIZE (GPRP OS=Zea mays OX=4577 GN=100273398 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPP 32
          MGGGKDKHDESDKGLFS+L HGVA G GYPP
Sbjct: 1  MGGGKDKHDESDKGLFSNLMHGVAGGHGYPP 31

[Close]

BLAST of Carg13143 vs. TrEMBL
Match: tr|B6UG93|B6UG93_MAIZE (Glycine-rich protein A3 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPP 32
          MGGGKDKHDESDKGLFS+L HGVA G GYPP
Sbjct: 1  MGGGKDKHDESDKGLFSNLMHGVAGGHGYPP 31

[Close]

BLAST of Carg13143 vs. TrEMBL
Match: tr|A0A0A9TEE8|A0A0A9TEE8_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.7e-06
Identity = 27/31 (87.10%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPP 32
          MGGGKDKHDESDKGLFS+L HGVA G GYPP
Sbjct: 1  MGGGKDKHDESDKGLFSNLMHGVAGGHGYPP 31

The following BLAST results are available for this feature:

BLAST of Carg13143 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022942872.1	2.1e-12	100.00	glycine-rich protein A3-like [Cucurbita moschata]	[more]
XP_022983060.1	2.1e-12	100.00	glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich pro...	[more]
XP_023515197.1	2.1e-12	100.00	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150942.2	3.2e-08	100.00	PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical pr...	[more]
XP_008451874.1	3.2e-08	100.00	PREDICTED: glycine-rich protein A3-like [Cucumis melo]	[more]

BLAST of Carg13143 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg13143 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13143 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRX9\|A0A1S3BRX9_CUCME	2.1e-08	100.00	glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1	[more]
tr\|A0A0A0KV55\|A0A0A0KV55_CUCSA	2.1e-08	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1	[more]
tr\|B4FV89\|B4FV89_MAIZE	5.7e-06	87.10	GPRP OS=Zea mays OX=4577 GN=100273398 PE=2 SV=1	[more]
tr\|B6UG93\|B6UG93_MAIZE	5.7e-06	87.10	Glycine-rich protein A3 OS=Zea mays OX=4577 PE=2 SV=1	[more]
tr\|A0A0A9TEE8\|A0A0A9TEE8_ARUDO	5.7e-06	87.10	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13143-RA	Carg13143-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..171
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 1..171

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13143	Cla005456	Watermelon (97103) v1	carwmB0043
Carg13143	Csa4G056610	Cucumber (Chinese Long) v2	carcuB0047
Carg13143	MELO3C016220	Melon (DHL92) v3.5.1	carmeB0044
Carg13143	ClCG07G011100	Watermelon (Charleston Gray)	carwcgB0046
Carg13143	CSPI04G06940	Wild cucumber (PI 183967)	carcpiB0051
Carg13143	Cucsa.180210	Cucumber (Gy14) v1	carcgyB0052
Carg13143	CmoCh16G005520	Cucurbita moschata (Rifu)	carcmoB0054
Carg13143	CmoCh04G006440	Cucurbita moschata (Rifu)	carcmoB0058
Carg13143	Lsi07G007770	Bottle gourd (USVL1VR-Ls)	carlsiB043
Carg13143	Cp4.1LG01g01110	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13143	Cp4.1LG14g02840	Cucurbita pepo (Zucchini)	carcpeB0057
Carg13143	CsGy4G006870	Cucumber (Gy14) v2	carcgybB0047
Carg13143	MELO3C016220.2	Melon (DHL92) v3.6.1	carmedB0047
Carg13143	CsaV3_4G007150	Cucumber (Chinese Long) v3	carcucB0052

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg13143	Carg11420	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13143	Cucurbita maxima (Rimu)	carcmaB0052
Carg13143	Cucurbita maxima (Rimu)	carcmaB0055
Carg13143	Melon (DHL92) v3.5.1	carmeB0042
Carg13143	Melon (DHL92) v3.6.1	carmedB0043
Carg13143	Melon (DHL92) v3.6.1	carmedB0045
Carg13143	Watermelon (97103) v2	carwmbB0043
Carg13143	Wax gourd	carwgoB0053