CsaV3_4G007150 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G007150
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	glycine-rich protein A3-like
Location	chr4 : 4866279 .. 4868557 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACCAAATCCTCCATTTCATCGGTAAATTCTCTCTCTCTTTTTCTCCTTTACGCGTTTTCTTTGTTTTGGAATTTTATTTTGATCTGCGTAGTACCCACAAATCGGAACTCCAAATATGTTACAATACCAGATTATTGCTTTGCTTTCCTTTTTTATTTCTGAATCTGGAATTTCTGATTATAGATTAATCTTTTTGTTGAAATACGCTGGAATTCATTTTTTTTTAATTAGTGTTATTTGTTGATTTCAAATTATTTTTTGTATGTGTCTTACGTTTCGGGAGATCGTGAATCTACAATTGGTGATCGATTTCGTGTTCTTTATGATTTGTGATCGGTTGTGATTGCGTTTATGGTTGTATCATTTTCTGTCGTGTGTTAATTTCTTTTAGGAAGTGGTATATTATGTAGAGAAGAACGGAGAGGGCAGGTTCAACTATTGATGTTTGAGTTTTTCTCTAATTTGTTCTATTTGAAGTTTCATAATTGAAAGATTACATCTGTAAAAGTTGGAATGCAAATTTCGCTCCTTCTTATAAGTGTTGGGACATGATCATAACATATTATCTACACTACCGAGCTTAGATCTCTTTGGTTTATCAATATAGAAGTTGCATTTTACTCGCACATTGAAGATATTTTTTGTTCATTCTATGTTAGGCATGTTCACATCGTTAACAAGTTTTGTTAAATGTGATCAATCCTTTTTGTCTCGATCTTTCTGGAAAAGAAAAAAGACACTATGGAGATCATTTTAGAGGCTGTCGAGTCATTGGCGTGAAGTCTATTTTTTAAATGTCTTATAAGTTCCAACAAATTAGCGCATCTCGTTGATTGAGAAGCAATCAATTTCTCTTTTCCCCTGGAAGCTGTTTTTGGAATTGTAATTATCTTGAATGGTTCTCCTCTGTGCTAAATGAGGAGTGTTGTGTTCCTAACTTCTCTGGTTTGAGTGAAGTTTGTTTGTCAATTTTCAGTTGTTATTAGAAGCTGATAAATCATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGTATTGATCCAATTTTTTACATACATCACTGGGAAGTGTATTATTATTATTATTATTATTATTAGATGGTTTGTTTAGTTAAGTTGTTAATTTAGTTAATTACTTCAATTACTTTGTCAATTAGAATGCAGGAATTAATAATAATTTAGATAATTTTGTTAGACCATCTATAACCCAGGCACTTTTAGGTTGTAATAAGGCTTTTGAAACATTTCATTTTAGAAATTTTGATGTTATCTCCATTGTTCTTGTGATGGATTTTTGCTCCCTACTATGGCTTTTTAAAAACAATCTCATACAAGTACAAAGTTGTCACATAAGGGATTCAATTGATGGTTTTGATAGAAGATCTTCTTACAAAGTTGCTGATTCCAAATCTTTTTAAATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAATTTTCCAGCCATCTCTTTTCACCGAGCCTTCTTCTTCGTCGGTCGATTTCAAGAATGGTGTCGGTGCAGATAGCGAGCGGCGTTACCATCTTCTTCTCTAATTTCTATAATGTCTTTTAAGACTCTGGATTTCGTATCTACTCTTATTGTCTCGACCACCTTTCTAATGGTTTGTGTACTCTTTTACTCTTTGGACGTCAATAATCTGGATCCATCTTTCCAGTTTTCACCTTATTTTTCTTCCTATTGTAAATTCTTTTGGTTTAACCTATAATTTAAAATGATGAAGATGTATTATTTGTTTTTTCATTGCTTAAATTATAGGAAGCAATGCTAATATCAATTTTGTGTTTTTTTTTGTTTT

mRNA sequence

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAA

Coding sequence (CDS)

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAA

Protein sequence

MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYPPPGGYPPPGGYPPPGGYPPPGGYPPSHGYPPQGYPPAGYPPGAHPPGAYPGPSAPHHSGHGVAGMLAGGAAAAAAAYGAHHVAHSAGHHYPHGVAHYGHGHGHGGKFKHHGKFKHGKFGKHKHGKHGMFGGGKFKKWK

Homology

[Close]

BLAST of CsaV3_4G007150 vs. NCBI nr
Match: XP_004150942.2 (PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_4G056610 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsaV3_4G007150 vs. NCBI nr
Match: XP_008451874.1 (PREDICTED: glycine-rich protein A3-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsaV3_4G007150 vs. NCBI nr
Match: XP_022942872.1 (glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsaV3_4G007150 vs. NCBI nr
Match: XP_022983060.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsaV3_4G007150 vs. NCBI nr
Match: XP_023515197.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsaV3_4G007150 vs. TrEMBL
Match: tr|A0A1S3BRX9|A0A1S3BRX9_CUCME (glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsaV3_4G007150 vs. TrEMBL
Match: tr|A0A0A0KV55|A0A0A0KV55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsaV3_4G007150 vs. TrEMBL
Match: tr|A0A0L9URY1|A0A0L9URY1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGA-GYPSHGYP 36
          MGGGKDKHDE DKGLFS+LA+GVAH A GYPS GYP
Sbjct: 1  MGGGKDKHDEEDKGLFSNLAYGVAHSAHGYPSGGYP 36

[Close]

BLAST of CsaV3_4G007150 vs. TrEMBL
Match: tr|A0A0S3T3K4|A0A0S3T3K4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G133800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGA-GYPSHGYP 36
          MGGGKDKHDE DKGLFS+LA+GVAH A GYPS GYP
Sbjct: 1  MGGGKDKHDEEDKGLFSNLAYGVAHSAHGYPSGGYP 36

[Close]

BLAST of CsaV3_4G007150 vs. TrEMBL
Match: tr|A0A0A9TEE8|A0A0A9TEE8_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSH------GYP 36
          MGGGKDKHDESDKGLFS+L HGVA G GYP H      GYP
Sbjct: 1  MGGGKDKHDESDKGLFSNLMHGVAGGHGYPPHQGYXXXGYP 41

The following BLAST results are available for this feature:

BLAST of CsaV3_4G007150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150942.2	1.4e-11	100.00	PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical pr...	[more]
XP_008451874.1	1.4e-11	100.00	PREDICTED: glycine-rich protein A3-like [Cucumis melo]	[more]
XP_022942872.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita moschata]	[more]
XP_022983060.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich pro...	[more]
XP_023515197.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_4G007150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G007150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsaV3_4G007150 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRX9\|A0A1S3BRX9_CUCME	9.2e-12	100.00	glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1	[more]
tr\|A0A0A0KV55\|A0A0A0KV55_CUCSA	9.2e-12	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1	[more]
tr\|A0A0L9URY1\|A0A0L9URY1_PHAAN	1.5e-06	83.33	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066300 PE...	[more]
tr\|A0A0S3T3K4\|A0A0S3T3K4_PHAAN	1.5e-06	83.33	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]
tr\|A0A0A9TEE8\|A0A0A9TEE8_ARUDO	5.8e-06	73.17	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G007150.1	CsaV3_4G007150.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 1..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G007150	CSPI04G06940	Wild cucumber (PI 183967)	cpicucB213
CsaV3_4G007150	Cucsa.180210	Cucumber (Gy14) v1	cgycucB289
CsaV3_4G007150	CmoCh16G005520	Cucurbita moschata (Rifu)	cmocucB0388
CsaV3_4G007150	CmoCh04G006440	Cucurbita moschata (Rifu)	cmocucB0827
CsaV3_4G007150	Cp4.1LG01g01110	Cucurbita pepo (Zucchini)	cpecucB0496
CsaV3_4G007150	Cp4.1LG14g02840	Cucurbita pepo (Zucchini)	cpecucB0266
CsaV3_4G007150	CsGy4G006870	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G007150	Carg13143	Silver-seed gourd	carcucB0052
CsaV3_4G007150	Carg11420	Silver-seed gourd	carcucB0689
CsaV3_4G007150	Cla005456	Watermelon (97103) v1	cucwmB323
CsaV3_4G007150	MELO3C016220	Melon (DHL92) v3.5.1	cucmeB300
CsaV3_4G007150	ClCG07G011100	Watermelon (Charleston Gray)	cucwcgB343
CsaV3_4G007150	Lsi07G007770	Bottle gourd (USVL1VR-Ls)	cuclsiB323
CsaV3_4G007150	MELO3C016220.2	Melon (DHL92) v3.6.1	cucmedB292

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G007150	Cucurbita maxima (Rimu)	cmacucB0393
CsaV3_4G007150	Cucurbita maxima (Rimu)	cmacucB0841
CsaV3_4G007150	Cucurbita moschata (Rifu)	cmocucB0560
CsaV3_4G007150	Watermelon (97103) v2	cucwmbB329
CsaV3_4G007150	Wax gourd	cucwgoB370