CsGy4G006870 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G006870
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	glycine-rich protein A3-like
Location	Chr4 : 4988804 .. 4991274 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGACTGTAAACTTGAATATTCGAACGCGTCCATTCCGCGTTTGCTTTTATTTTTATTTCTTTCGCACGAGAAAAGGAAAATAATTCAATAAATAAATAATCTTCTATTTATCTATATCTATATATATATATATATAACGATTTCTTCAAGAATTCAAGTCTCCTCCTCTCTATCTTCATATTCCAACAACCAAATCCTCCATTTCATCGGTAAATTCTCTCTCTCTTTTTCTCCTTTACGCGTTTTCTTTGTTTTGGAATTTTATTTTGATCTGCGTAGTACCCACAAATCGGAACTCCAAATATGTTACAATACCAGATTATTGCTTTGCTTTCCTTTTTTATTTCTGAATCTGGAATTTCTGATTATAGATTAATCTTTTTGTTGAAATACGCTGGAATTCATTTTTTTTTAATTAGTGTTATTTGTTGATTTCAAATTATTTTTTGTATGTGTCTTACGTTTCGGGAGATCGTGAATCTACAATTGGTGATCGATTTCGTGTTCTTTATGATTTGTGATCGGTTGTGATTGCGTTTATGGTTGTATCATTTTCTGTCGTGTGTTAATTTCTTTTAGGAAGTGGTATATTATGTAGAGAAGAACGGAGAGGGCAGGTTCAACTATTGATGTTTGAGTTTTTCTCTAATTTGTTCTATTTGAAGTTTCATAATTGAAAGATTACATCTGTAAAAGTTGGAATGCAAATTTCGCTCCTTCTTATAAGTGTTGGGACATGATCATAACATATTATCTACACTACCGAGCTTAGATCTCTTTGGTTTATCAATATAGAAGTTGCATTTTACTCGCACATTGAAGATATTTTTTGTTCATTCTATGTTAGGCATGTTCACATCGTTAACAAGTTTTGTTAAATGTGATCAATCCTTTTTGTCTCGATCTTTCTGGAAAAGAAAAAAGACACTATGGAGATCATTTTAGAGGCTGTCGAGTCATTGGCGTGAAGTCTATTTTTTAAATGTCTTATAAGTTCCAACAAATTAGCGCATCTCGTTGATTGAGAAGCAATCAATTTCTCTTTTCCCCTGGAAGCTGTTTTTGGAATTGTAATTATCTTGAATGGTTCTCCTCTGTGCTAAATGAGGAGTGTTGTGTTCCTAACTTCTCTGGTTTGAGTGAAGTTTGTTTGTCAATTTTCAGTTGTTATTAGAAGCTGATAAATCATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGTATTGATCCAATTTTTTACATACATCACTGGGAAGTGTATTATTATTATTATTATTATTATTAGATGGTTTGTTTAGTTAAGTTGTTAATTTAGTTAATTACTTCAATTACTTTGTCAATTAGAATGCAGGAATTAATAATAATTTAGATAATTTTGTTAGACCATCTATAACCCAGGCACTTTTAGGTTGTAATAAGGCTTTTGAAACATTTCATTTTAGAAATTTTGATGTTATCTCCATTGTTCTTGTGATGGATTTTTGCTCCCTACTATGGCTTTTTAAAAACAATCTCATACAAGTACAAAGTTGTCACATAAGGGATTCAATTGATGGTTTTGATAGAAGATCTTCTTACAAAGTTGCTGATTCCAAATCTTTTTAAATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAATTTTCCAGCCATCTCTTTTCACCGAGCCTTCTTCTTCGTCGGTCGATTTCAAGAATGGTGTCGGTGCAGATAGCGAGCGGCGTTACCATCTTCTTCTCTAATTTCTATAATGTCTTTTAAGACTCTGGATTTCGTATCTACTCTTATTGTCTCGACCACCTTTCTAATGGTTTGTGTACTCTTTTACTCTTTGGACGTCAATAATCTGGATCCATCTTTCCAGTTTTCACCTTATTTTTCTTCCTATTGTAAATTCTTTTGGTTTAACCTATAATTTAAAATGATGAAGATGTATTATTTGTTTTTTCATTGCTTAAATTATAGGAAGCAATGCTAATATCAATTTTGTGTTTTTTTTTGTTTTGAGTTT

mRNA sequence

AAGACTGTAAACTTGAATATTCGAACGCGTCCATTCCGCGTTTGCTTTTATTTTTATTTCTTTCGCACGAGAAAAGGAAAATAATTCAATAAATAAATAATCTTCTATTTATCTATATCTATATATATATATATATAACGATTTCTTCAAGAATTCAAGTCTCCTCCTCTCTATCTTCATATTCCAACAACCAAATCCTCCATTTCATCGTTGTTATTAGAAGCTGATAAATCATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAATTTTCCAGCCATCTCTTTTCACCGAGCCTTCTTCTTCGTCGGTCGATTTCAAGAATGGTGTCGGTGCAGATAGCGAGCGGCGTTACCATCTTCTTCTCTAATTTCTATAATGTCTTTTAAGACTCTGGATTTCGTATCTACTCTTATTGTCTCGACCACCTTTCTAATGGTTTGTGTACTCTTTTACTCTTTGGACGTCAATAATCTGGATCCATCTTTCCAGTTTTCACCTTATTTTTCTTCCTATTGTAAATTCTTTTGGTTTAACCTATAATTTAAAATGATGAAGATGTATTATTTGTTTTTTCATTGCTTAAATTATAGGAAGCAATGCTAATATCAATTTTGTGTTTTTTTTTGTTTTGAGTTT

Coding sequence (CDS)

ATGGGGGGTGGAAAAGATAAACATGATGAATCTGACAAAGGTTTATTCTCCCATCTGGCTCATGGTGTTGCCCATGGAGCTGGATATCCTTCCCATGGATACCCACCTCCTGGCGGGTATCCACCTCCTGGAGGGTATCCACCTCCTGGAGGGTATCCCCCACCCGGAGGATATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGCTGGCTACCCTCCAGGCGCTCATCCTCCTGGTGCTTATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCCGGAGGTGCTGCAGCTGCAGCAGCGGCATATGGAGCTCATCACGTGGCCCATAGCGCTGGTCATCATTACCCCCATGGTGTTGCTCATTATGGTCATGGTCACGGTCACGGTGGAAAATTCAAGCACCATGGGAAGTTCAAGCACGGAAAGTTTGGGAAACACAAACATGGGAAACACGGGATGTTTGGCGGAGGAAAATTCAAGAAGTGGAAGTAA

Protein sequence

MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYPPPGGYPPPGGYPPPGGYPPPGGYPPSHGYPPQGYPPAGYPPGAHPPGAYPGPSAPHHSGHGVAGMLAGGAAAAAAAYGAHHVAHSAGHHYPHGVAHYGHGHGHGGKFKHHGKFKHGKFGKHKHGKHGMFGGGKFKKWK

Homology

[Close]

BLAST of CsGy4G006870 vs. NCBI nr
Match: XP_004150942.2 (PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_4G056610 [Cucumis sativus])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsGy4G006870 vs. NCBI nr
Match: XP_008451874.1 (PREDICTED: glycine-rich protein A3-like [Cucumis melo])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsGy4G006870 vs. NCBI nr
Match: XP_022942872.1 (glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsGy4G006870 vs. NCBI nr
Match: XP_022983060.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsGy4G006870 vs. NCBI nr
Match: XP_023515197.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 67.8 bits (164), Expect = 4.2e-08
Identity = 30/30 (100.00%), Postives = 30/30 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 31
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYP 30

[Close]

BLAST of CsGy4G006870 vs. TrEMBL
Match: tr|A0A1S3BRX9|A0A1S3BRX9_CUCME (glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsGy4G006870 vs. TrEMBL
Match: tr|A0A0A0KV55|A0A0A0KV55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 9.2e-12
Identity = 35/35 (100.00%), Postives = 35/35 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 36
          MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSHGYP 35

[Close]

BLAST of CsGy4G006870 vs. TrEMBL
Match: tr|A0A0L9URY1|A0A0L9URY1_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066300 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGA-GYPSHGYP 36
          MGGGKDKHDE DKGLFS+LA+GVAH A GYPS GYP
Sbjct: 1  MGGGKDKHDEEDKGLFSNLAYGVAHSAHGYPSGGYP 36

[Close]

BLAST of CsGy4G006870 vs. TrEMBL
Match: tr|A0A0S3T3K4|A0A0S3T3K4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G133800 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.5e-06
Identity = 30/36 (83.33%), Postives = 32/36 (88.89%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGA-GYPSHGYP 36
          MGGGKDKHDE DKGLFS+LA+GVAH A GYPS GYP
Sbjct: 1  MGGGKDKHDEEDKGLFSNLAYGVAHSAHGYPSGGYP 36

[Close]

BLAST of CsGy4G006870 vs. TrEMBL
Match: tr|A0A0A9TEE8|A0A0A9TEE8_ARUDO (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.8e-06
Identity = 30/41 (73.17%), Postives = 31/41 (75.61%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGAGYPSH------GYP 36
          MGGGKDKHDESDKGLFS+L HGVA G GYP H      GYP
Sbjct: 1  MGGGKDKHDESDKGLFSNLMHGVAGGHGYPPHQGYXXXGYP 41

The following BLAST results are available for this feature:

BLAST of CsGy4G006870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150942.2	1.4e-11	100.00	PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical pr...	[more]
XP_008451874.1	1.4e-11	100.00	PREDICTED: glycine-rich protein A3-like [Cucumis melo]	[more]
XP_022942872.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita moschata]	[more]
XP_022983060.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita maxima] >XP_022983068.1 glycine-rich pro...	[more]
XP_023515197.1	4.2e-08	100.00	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsGy4G006870 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CsGy4G006870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G006870 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRX9\|A0A1S3BRX9_CUCME	9.2e-12	100.00	glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1	[more]
tr\|A0A0A0KV55\|A0A0A0KV55_CUCSA	9.2e-12	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1	[more]
tr\|A0A0L9URY1\|A0A0L9URY1_PHAAN	1.5e-06	83.33	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066300 PE...	[more]
tr\|A0A0S3T3K4\|A0A0S3T3K4_PHAAN	1.5e-06	83.33	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]
tr\|A0A0A9TEE8\|A0A0A9TEE8_ARUDO	5.8e-06	73.17	Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G006870.1	CsGy4G006870.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 149..173
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 1..173

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G006870	CsaV3_4G007150	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G006870	Carg13143	Silver-seed gourd	carcgybB0047
CsGy4G006870	Carg11420	Silver-seed gourd	carcgybB0652

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G006870	Watermelon (97103) v2	cgybwmbB304
CsGy4G006870	Wax gourd	cgybwgoB352
CsGy4G006870	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G006870	Cucurbita maxima (Rimu)	cgybcmaB541
CsGy4G006870	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G006870	Cucurbita moschata (Rifu)	cgybcmoB515
CsGy4G006870	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G006870	Cucurbita pepo (Zucchini)	cgybcpeB501
CsGy4G006870	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G006870	Bottle gourd (USVL1VR-Ls)	cgyblsiB278
CsGy4G006870	Melon (DHL92) v3.5.1	cgybmeB255
CsGy4G006870	Melon (DHL92) v3.6.1	cgybmedB254
CsGy4G006870	Watermelon (Charleston Gray)	cgybwcgB302
CsGy4G006870	Watermelon (97103) v1	cgybwmB289
CsGy4G006870	Wild cucumber (PI 183967)	cgybcpiB168