Carg11420 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11420
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	glycine-rich protein A3-like
Location	Cucurbita_argyrosperma_scaffold_025 : 934932 .. 935972 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGGGTGGAAAAGATAAACATGACGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGGTGGATATCCTCATCCTGGAGGATATCCCCCACCTGGAGGGTATCCCCCACCCGGAGGTTATCCTCCCCCTGGAGGTTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGGACATGGCTACCCCCCGGCTGGCTATCCTCCGGGTGCTTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGTATTAATCCAATTTACATACATCAGTAGGAAGAGTTATTAGATCCTTAGTTTAGTCGAGTTGTTATTTAGTTAATTTCTTCTATTAATTTGTCAATTAGTCTGCAGGGTTTAATAGTAATTTCAATTATTTTGTTAAGGCTATCTATATCCACTTTTAGATTGTAATAGAAGGATTTTTAAACGTTTCGTTACGGAAATTGTTATGCTTTCCCTCCATTGAGATTTGACTCGTGTTCTTGGGATCGATTTTCACCCCACTATGGCTTTCAATACAATCTAACGAATCCCACTGTGTCATCATGTGTCAGAATTGTTTTGAAGCATTCGGGTGTAAATTGCTAAAAATTTTAAGTGAAATTGTTCTATTCGAACCATTACAACATCACCCATTGAAAAATACATTAATCAAGCGCTTAAAATCAACCACAGCGAAGATTGAGGATCCTGACTCATACAAGTATTGATGCAAATATATTTATACAGTGCTATATTACAAGATCCAACTCTACTACAACTTCAGGGCACGGTGTAGCAGGAATGCTCGCTGGTGGTGCTGCCGCTGCAGCAGCTGCATACGGAGTTCATCATGTCGCCCATGGTGCTGGTCACTACCCCCACGGCGTTGCTCATTATGGTCATCATGGTGGAAAATTCAAGCACGGCAAGCACGGCAAGTTCAAGCATGGGAAGTTCGGGAAGCACAAACATGGGAAGCACGGCATGTTTGGTGGTGGCAAATTCAAGAAGTGGAAGTGA

mRNA sequence

ATGGGGGGTGGAAAAGATAAACATGACGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGGTGGATATCCTCATCCTGGAGGATATCCCCCACCTGGAGGGTATCCCCCACCCGGAGGTTATCCTCCCCCTGGAGGTTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGGACATGGCTACCCCCCGGCTGGCTATCCTCCGGGTGCTTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCTGGTGGTGCTGCCGCTGCAGCAGCTGCATACGGAGTTCATCATGTCGCCCATGGTGCTGGTCACTACCCCCACGGCGTTGCTCATTATGGTCATCATGGTGGAAAATTCAAGCACGGCAAGCACGGCAAGTTCAAGCATGGGAAGTTCGGGAAGCACAAACATGGGAAGCACGGCATGTTTGGTGGTGGCAAATTCAAGAAGTGGAAGTGA

Coding sequence (CDS)

ATGGGGGGTGGAAAAGATAAACATGACGAATCTGACAAAGGTTTATTCTCGCATCTGGCTCATGGTGTTGCTCATGGAGGTGGATATCCTCATCCTGGAGGATATCCCCCACCTGGAGGGTATCCCCCACCCGGAGGTTATCCTCCCCCTGGAGGTTATCCTCCATCTCATGGCTATCCACCCCAAGGATATCCCCCAGGACATGGCTACCCCCCGGCTGGCTATCCTCCGGGTGCTTATCCTCCTGGTGCATATCCTGGACCCTCTGCTCCACACCATTCAGGGCACGGTGTAGCAGGAATGCTCGCTGGTGGTGCTGCCGCTGCAGCAGCTGCATACGGAGTTCATCATGTCGCCCATGGTGCTGGTCACTACCCCCACGGCGTTGCTCATTATGGTCATCATGGTGGAAAATTCAAGCACGGCAAGCACGGCAAGTTCAAGCATGGGAAGTTCGGGAAGCACAAACATGGGAAGCACGGCATGTTTGGTGGTGGCAAATTCAAGAAGTGGAAGTGA

Protein sequence

MGGGKDKHDESDKGLFSHLAHGVAHGGGYPHPGGYPPPGGYPPPGGYPPPGGYPPSHGYPPQGYPPGHGYPPAGYPPGAYPPGAYPGPSAPHHSGHGVAGMLAGGAAAAAAAYGVHHVAHGAGHYPHGVAHYGHHGGKFKHGKHGKFKHGKFGKHKHGKHGMFGGGKFKKWK

Homology

[Close]

BLAST of Carg11420 vs. NCBI nr
Match: XP_022931474.1 (glycine-rich protein A3-like [Cucurbita moschata] >XP_022931475.1 glycine-rich protein A3-like [Cucurbita moschata] >XP_022931476.1 glycine-rich protein A3-like [Cucurbita moschata] >XP_022931477.1 glycine-rich protein A3-like [Cucurbita moschata])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 28
          MGGGKDKHDESDKGLFSHLAHGVAHGG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 27

[Close]

BLAST of Carg11420 vs. NCBI nr
Match: XP_022984947.1 (glycine-rich protein A3-like [Cucurbita maxima] >XP_022984948.1 glycine-rich protein A3-like [Cucurbita maxima] >XP_022984949.1 glycine-rich protein A3-like [Cucurbita maxima] >XP_022984950.1 glycine-rich protein A3-like [Cucurbita maxima])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 28
          MGGGKDKHDESDKGLFSHLAHGVAHGG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 27

[Close]

BLAST of Carg11420 vs. NCBI nr
Match: XP_023553494.1 (glycine-rich protein A3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.8 bits (146), Expect = 5.1e-06
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 28
          MGGGKDKHDESDKGLFSHLAHGVAHGG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHGG 27

[Close]

BLAST of Carg11420 vs. NCBI nr
Match: XP_004150942.2 (PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical protein Csa_4G056610 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 27
          MGGGKDKHDESDKGLFSHLAHGVAHG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 26

[Close]

BLAST of Carg11420 vs. NCBI nr
Match: XP_008451874.1 (PREDICTED: glycine-rich protein A3-like [Cucumis melo])

HSP 1 Score: 58.9 bits (141), Expect = 1.9e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 27
          MGGGKDKHDESDKGLFSHLAHGVAHG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 26

[Close]

BLAST of Carg11420 vs. TrEMBL
Match: tr|A0A1S3BRX9|A0A1S3BRX9_CUCME (glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 27
          MGGGKDKHDESDKGLFSHLAHGVAHG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 26

[Close]

BLAST of Carg11420 vs. TrEMBL
Match: tr|A0A0A0KV55|A0A0A0KV55_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 1.3e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 27
          MGGGKDKHDESDKGLFSHLAHGVAHG
Sbjct: 1  MGGGKDKHDESDKGLFSHLAHGVAHG 26

[Close]

BLAST of Carg11420 vs. TrEMBL
Match: tr|A0A1J7G0K4|A0A1J7G0K4_LUPAN (Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03770 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 7.0e-04
Identity = 23/25 (92.00%), Postives = 25/25 (100.00%), Query Frame = 0


Query: 1  MGGGKDKHDESDKGLFSHLAHGVAH 26
          MGGGKDKHDESDKG+FSHLAHGVA+
Sbjct: 1  MGGGKDKHDESDKGVFSHLAHGVAN 25

The following BLAST results are available for this feature:

BLAST of Carg11420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022931474.1	5.1e-06	100.00	glycine-rich protein A3-like [Cucurbita moschata] >XP_022931475.1 glycine-rich p...	[more]
XP_022984947.1	5.1e-06	100.00	glycine-rich protein A3-like [Cucurbita maxima] >XP_022984948.1 glycine-rich pro...	[more]
XP_023553494.1	5.1e-06	100.00	glycine-rich protein A3-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150942.2	1.9e-05	100.00	PREDICTED: glycine-rich protein A3 [Cucumis sativus] >KGN53470.1 hypothetical pr...	[more]
XP_008451874.1	1.9e-05	100.00	PREDICTED: glycine-rich protein A3-like [Cucumis melo]	[more]

BLAST of Carg11420 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11420 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11420 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BRX9\|A0A1S3BRX9_CUCME	1.3e-05	100.00	glycine-rich protein A3-like OS=Cucumis melo OX=3656 GN=LOC103493032 PE=4 SV=1	[more]
tr\|A0A0A0KV55\|A0A0A0KV55_CUCSA	1.3e-05	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G056610 PE=4 SV=1	[more]
tr\|A0A1J7G0K4\|A0A1J7G0K4_LUPAN	7.0e-04	92.00	Uncharacterized protein OS=Lupinus angustifolius OX=3871 GN=TanjilG_03770 PE=4 S...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11420-RA	Carg11420-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..172
None	No IPR available	PANTHER	PTHR31248	FAMILY NOT NAMED	coord: 1..172

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11420	Cla005456	Watermelon (97103) v1	carwmB0652
Carg11420	Csa4G056610	Cucumber (Chinese Long) v2	carcuB0677
Carg11420	MELO3C016220	Melon (DHL92) v3.5.1	carmeB0653
Carg11420	ClCG07G011100	Watermelon (Charleston Gray)	carwcgB0637
Carg11420	CSPI04G06940	Wild cucumber (PI 183967)	carcpiB0687
Carg11420	Cucsa.180210	Cucumber (Gy14) v1	carcgyB0732
Carg11420	CmoCh16G005520	Cucurbita moschata (Rifu)	carcmoB0898
Carg11420	CmoCh04G006440	Cucurbita moschata (Rifu)	carcmoB0902
Carg11420	Lsi07G007770	Bottle gourd (USVL1VR-Ls)	carlsiB596
Carg11420	Cp4.1LG01g01110	Cucurbita pepo (Zucchini)	carcpeB0929
Carg11420	Cp4.1LG14g02840	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11420	CsGy4G006870	Cucumber (Gy14) v2	carcgybB0652
Carg11420	MELO3C016220.2	Melon (DHL92) v3.6.1	carmedB0664
Carg11420	CsaV3_4G007150	Cucumber (Chinese Long) v3	carcucB0689

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg11420	Carg13143	Silver-seed gourd	carcarB050

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11420	Silver-seed gourd	carcarB052
Carg11420	Cucurbita maxima (Rimu)	carcmaB0924
Carg11420	Cucurbita maxima (Rimu)	carcmaB0927
Carg11420	Melon (DHL92) v3.5.1	carmeB0652
Carg11420	Melon (DHL92) v3.6.1	carmedB0662
Carg11420	Melon (DHL92) v3.6.1	carmedB0663
Carg11420	Watermelon (97103) v2	carwmbB0682
Carg11420	Wax gourd	carwgoB0770