Carg13077 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13077
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_101 : 164068 .. 164664 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

mRNA sequence

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Coding sequence (CDS)

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Protein sequence

MRKHHDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC

Homology

[Close]

BLAST of Carg13077 vs. NCBI nr
Match: XP_022941606.1 (uncharacterized protein LOC111446913 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.8e-92
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Carg13077 vs. NCBI nr
Match: XP_023525568.1 (uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 5.3e-92
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAP TAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 121 FSVQSFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Carg13077 vs. NCBI nr
Match: XP_022982486.1 (uncharacterized protein LOC111481290 [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 7.0e-84
Identity = 187/198 (94.44%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHD     GRTN      XXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 43  MRKHHDXXXXXGRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 102

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 103 ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 162

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 163 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 222

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 223 SCRVAIAVSDGSVLGFHC 240

[Close]

BLAST of Carg13077 vs. NCBI nr
Match: XP_004148992.1 (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hypothetical protein Csa_4G052640 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Carg13077 vs. NCBI nr
Match: XP_008451958.1 (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 170/190 (89.47%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV NGT+NFT
Sbjct: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVTNGTINFT 70

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI++GQTQYMAATFSVQSFPL
Sbjct: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMAATFSVQSFPL 130

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
           A+PV A+GAGPT+S GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA  SCRVAIAV
Sbjct: 131 ASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEAISSCRVAIAV 190

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 191 SDGSVLGFHC 200

[Close]

BLAST of Carg13077 vs. TAIR10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 180.6 bits (457), Expect = 9.2e-46
Identity = 92/185 (49.73%), Postives = 130/185 (70.27%), Query Frame = 0


Query: 14  TNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFTFSQYV 73
           +NLASC V                      +DP+I+V++V++PSFSVAN +V+FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 74  SVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVT 133
           +VRNPN+A+FSHY++ +QL Y G++IG+ F+PAG+I+SG+T+ M ATFSVQSFPLAA   
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAA--- 125

Query: 134 AIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSV 193
           A  +  + ++  N  R G T+EIESK++MAGRVRVL  FTH + A  +CR+AI+ SDGS+
Sbjct: 126 ASSSQISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 194 LGFHC 199
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of Carg13077 vs. TAIR10
Match: AT1G64450.1 (Glycine-rich protein family)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 137/342 (40.06%), Postives = 164/342 (47.95%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           M K HD    SGRTNLASC V XXXXXXXXXXXXXXXXXX   +DPKI+V+AVQLPSF+V
Sbjct: 1   MAKPHDRRRSSGRTNLASCAVAXXXXXXXXXXXXXXXXXXFKPKDPKISVNAVQLPSFAV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           +N T NF+FSQYV+VRNPN+A FSHYDSS+QLLYSG+Q+GFMFIPAGKIDSG+ QYMAAT
Sbjct: 61  SNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAAT 120

Query: 121 FSVQSFPLAAP----VTAIGA----------GPTYSEGMNGY------------------ 180
           F+V SFP++ P    ++ + A          GP                           
Sbjct: 121 FTVHSFPISPPSSSAISTVSAAVIPDSPIIPGPXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

[Close]

BLAST of Carg13077 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 39/134 (29.10%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +N T +  +S++NPN+  FS+  SS  L Y G  IG   +PA +I + +T  +  T ++ 
Sbjct: 107 LNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLM 166

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           +  L +    +      S+ M G      + + + + + G+V VL  F   V+++ SC +
Sbjct: 167 ADRLLSETQLL------SDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDL 226

Query: 185 AIAVSDGSVLGFHC 199
           +I+VSD +V   HC
Sbjct: 227 SISVSDRNVTSQHC 229

[Close]

BLAST of Carg13077 vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-05
Identity = 36/162 (22.22%), Postives = 68/162 (41.98%), Query Frame = 0


Query: 44  QDPKIAVSAVQLPSFSVANGT-------VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSG 103
           +DP I ++ V +       GT        N +    VSV+NPN ASF + +++  + Y G
Sbjct: 64  KDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKG 123

Query: 104 SQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEI 163
           + +G      GK    +T  M  T  +    L   ++  G G   S           + +
Sbjct: 124 TLVGEAHGLPGKARPHRTSRMNVTVDIM---LDRILSDPGLGREISR-------SGLVNV 183

Query: 164 ESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC 199
            S   + G+V+++     HV   ++C +A+ ++  ++    C
Sbjct: 184 WSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDC 215

[Close]

BLAST of Carg13077 vs. TrEMBL
Match: tr|A0A0A0KX26|A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 9.6e-82
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Carg13077 vs. TrEMBL
Match: tr|A0A1S3BSP1|A0A1S3BSP1_CUCME (uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.2e-77
Identity = 170/190 (89.47%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV NGT+NFT
Sbjct: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVTNGTINFT 70

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI++GQTQYMAATFSVQSFPL
Sbjct: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMAATFSVQSFPL 130

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
           A+PV A+GAGPT+S GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA  SCRVAIAV
Sbjct: 131 ASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEAISSCRVAIAV 190

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 191 SDGSVLGFHC 200

[Close]

BLAST of Carg13077 vs. TrEMBL
Match: tr|F6HU27|F6HU27_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.3e-66
Identity = 148/190 (77.89%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX++P I+V+AVQLPSF+++NGTVNFT
Sbjct: 7   PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXKEPIISVNAVQLPSFAISNGTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKA FSHYDS+LQLLY G+Q+GFMFIPAGKI SG+TQYMAATF+V+SFPL
Sbjct: 67  FSQYVSVKNPNKAEFSHYDSTLQLLYGGNQVGFMFIPAGKIGSGRTQYMAATFAVESFPL 126

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
            A   ++  GPT ++G+ G+RIGP LEIES+M+MAGRVRVLHFFTHHV+A   CRV+IAV
Sbjct: 127 GAVPESV--GPTITDGLGGFRIGPNLEIESRMEMAGRVRVLHFFTHHVDARAVCRVSIAV 186

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 187 SDGSVLGFHC 194

[Close]

BLAST of Carg13077 vs. TrEMBL
Match: tr|A0A067JZ66|A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.7e-66
Identity = 153/200 (76.50%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIV  XXXXXXXXXXXXXXXXXXXX    I+V+AVQLPSFSV+N TVNFT
Sbjct: 7   PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXISVNAVQLPSFSVSNNTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 129 -AAPVTAIGAGPTYSEGM---------NGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 188
            ++P  A+  GPT++ G+          GYR+GPT+EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 189 TLSCRVAIAVSDGSVLGFHC 199
              CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of Carg13077 vs. TrEMBL
Match: tr|A0A2I4EY48|A0A2I4EY48_9ROSI (uncharacterized protein LOC108993768 OS=Juglans regia OX=51240 GN=LOC108993768 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.3e-65
Identity = 146/192 (76.04%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIV  XXXXXXXXXXXXXXXXXX   DPKI+V AVQLPSF+++N TV+FT
Sbjct: 7   PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXKAHDPKISVIAVQLPSFTLSNSTVSFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYV+VRNPN+A FSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+T+YM ATF+VQSFPL
Sbjct: 67  FSQYVAVRNPNRADFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTEYMTATFAVQSFPL 126

Query: 129 AAPVTAIGAGPTY--SEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAI 188
            AP T    GP++  S G  G RIGPT+EIES+M+MAGRVRVLHFFTHHV+    C+V I
Sbjct: 127 TAPQTVGVLGPSFPGSGGGGGIRIGPTMEIESRMEMAGRVRVLHFFTHHVDTKTDCKVVI 186

Query: 189 AVSDGSVLGFHC 199
           AVSDGSVLGFHC
Sbjct: 187 AVSDGSVLGFHC 198

The following BLAST results are available for this feature:

BLAST of Carg13077 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941606.1	1.8e-92	100.00	uncharacterized protein LOC111446913 [Cucurbita moschata]	[more]
XP_023525568.1	5.3e-92	99.49	uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo]	[more]
XP_022982486.1	7.0e-84	94.44	uncharacterized protein LOC111481290 [Cucurbita maxima]	[more]
XP_004148992.1	1.5e-81	91.24	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hy...	[more]
XP_008451958.1	4.8e-77	89.47	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]

BLAST of Carg13077 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	9.2e-46	49.73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	2.0e-45	40.06	Glycine-rich protein family	[more]
AT3G54200.1	1.2e-08	29.10	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	6.0e-05	22.22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg13077 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13077 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KX26\|A0A0A0KX26_CUCSA	9.6e-82	91.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1	[more]
tr\|A0A1S3BSP1\|A0A1S3BSP1_CUCME	3.2e-77	89.47	uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=...	[more]
tr\|F6HU27\|F6HU27_VITVI	4.3e-66	77.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=...	[more]
tr\|A0A067JZ66\|A0A067JZ66_JATCU	9.7e-66	76.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1	[more]
tr\|A0A2I4EY48\|A0A2I4EY48_9ROSI	6.3e-65	76.04	uncharacterized protein LOC108993768 OS=Juglans regia OX=51240 GN=LOC108993768 P...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg13077-RA	Carg13077-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 73..182 e-value: 3.6E-10 score: 40.2
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 5..198
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 5..198
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 28..147

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg13077	Cla012811	Watermelon (97103) v1	carwmB0043
Carg13077	Csa4G052640	Cucumber (Chinese Long) v2	carcuB0044
Carg13077	MELO3C016302	Melon (DHL92) v3.5.1	carmeB0043
Carg13077	ClCG07G011530	Watermelon (Charleston Gray)	carwcgB0049
Carg13077	CSPI04G06460	Wild cucumber (PI 183967)	carcpiB0048
Carg13077	Cucsa.114930	Cucumber (Gy14) v1	carcgyB0051
Carg13077	CmaCh04G006810	Cucurbita maxima (Rimu)	carcmaB0055
Carg13077	CmoCh04G007260	Cucurbita moschata (Rifu)	carcmoB0058
Carg13077	Lsi07G007260	Bottle gourd (USVL1VR-Ls)	carlsiB040
Carg13077	Cp4.1LG01g00540	Cucurbita pepo (Zucchini)	carcpeB0061
Carg13077	CsGy4G006380	Cucumber (Gy14) v2	carcgybB0044
Carg13077	MELO3C016302.2	Melon (DHL92) v3.6.1	carmedB0044
Carg13077	CsaV3_4G006680	Cucumber (Chinese Long) v3	carcucB0049
Carg13077	Cla97C07G138290	Watermelon (97103) v2	carwmbB0045
Carg13077	Bhi01G002307	Wax gourd	carwgoB0049

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg13077	Silver-seed gourd	carcarB048
Carg13077	Silver-seed gourd	carcarB052
Carg13077	Cucumber (Gy14) v2	carcgybB0048
Carg13077	Cucumber (Gy14) v1	carcgyB0056
Carg13077	Cucurbita maxima (Rimu)	carcmaB0051
Carg13077	Cucurbita maxima (Rimu)	carcmaB0054
Carg13077	Cucurbita moschata (Rifu)	carcmoB0053
Carg13077	Cucurbita moschata (Rifu)	carcmoB0056
Carg13077	Cucurbita pepo (Zucchini)	carcpeB0056
Carg13077	Cucurbita pepo (Zucchini)	carcpeB0058
Carg13077	Wild cucumber (PI 183967)	carcpiB0052
Carg13077	Cucumber (Chinese Long) v2	carcuB0048
Carg13077	Cucumber (Chinese Long) v3	carcucB0053
Carg13077	Bottle gourd (USVL1VR-Ls)	carlsiB038
Carg13077	Melon (DHL92) v3.5.1	carmeB0040
Carg13077	Melon (DHL92) v3.5.1	carmeB0045
Carg13077	Melon (DHL92) v3.6.1	carmedB0041
Carg13077	Melon (DHL92) v3.6.1	carmedB0046
Carg13077	Watermelon (Charleston Gray)	carwcgB0044
Carg13077	Watermelon (97103) v1	carwmB0049
Carg13077	Watermelon (97103) v2	carwmbB0041
Carg13077	Wax gourd	carwgoB0048