CSPI04G06460 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI04G06460
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein
Location	Chr4 : 4492220 .. 4493123 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAAACCTCACTTTTCAAATTTAGAACCCAAAAAATATCTATTAAAATTATTCATTATTTATTTAATATTCATTTTTTCTAAAAAAACTTAATTTTATTTGCACAATTTCCACACTTACTTACTTTCTCTATTCATTTTCTCTTCCATCATTTTATTTTGTATCCAAACACACCGCTATTCTCTTTCCTCTCTTCCAAATTCAGATCCCGTTCCACCTCCGCCGTAAGCACCGCCATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAATTCTTCTTCTGGAAAATTTGGTCAGTTGGGTGTTGAGATTCTCATACTCTTTTAAGTGTAAAAA

mRNA sequence

ATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAA

Coding sequence (CDS)

ATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAA

Homology

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BLAST of CSPI04G06460 vs. TrEMBL
Match: A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 394.4 bits (1012), Expect = 8.1e-107
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
           TSSCRVAIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CSPI04G06460 vs. TrEMBL
Match: A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 2.0e-81
Identity = 157/200 (78.50%), Postives = 179/200 (89.50%), Query Frame = 1


Query: 11  PPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTINFT 70
           PPSGRTNLASC+VAT+FLIF+II+ILIVFFTVFKP+DPKI+V+AVQLPSFSV+N T+NFT
Sbjct: 7   PPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVNFT 66

Query: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPL 130
           FSQYVSVKNPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKIDAG+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 131 -AAPVASVGAGPTFSEGM---------NGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 190
            ++P A+V  GPTF+ G+          GYRVGP +EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 191 TSSCRVAIAVSDGSVLGFHC 201
            + CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of CSPI04G06460 vs. TrEMBL
Match: B9GXJ6_POPTR (Proline-rich family protein OS=Populus trichocarpa GN=POPTR_0003s14110g PE=4 SV=2)

HSP 1 Score: 305.4 bits (781), Expect = 5.0e-80
Identity = 156/211 (73.93%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           M  PH     PPSGRTNLASC+VAT+FLIFL+I+ILIVFFTVFKP+DPKI+V++VQLPSF
Sbjct: 1   MSKPH----RPPSGRTNLASCIVATIFLIFLVIIILIVFFTVFKPKDPKISVNSVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV+N T+NFTFSQYVSVKNPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKIDAG+TQYMA
Sbjct: 61  SVSNNTVNFTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMA 120

Query: 121 ATFSVQSFPL-AAPVASVGAGPTFSEG----------MNGYRVGPILEIESKMDMAGRVR 180
           ATFSV+SFPL A+P A+V  GP F++G           NGYRVGP +EIES++ MAGRVR
Sbjct: 121 ATFSVESFPLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVR 180

Query: 181 VLHFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           VLHFFTHH+E    CRV IAVSDGSVLGFHC
Sbjct: 181 VLHFFTHHLETKVGCRVVIAVSDGSVLGFHC 207

[Close]

BLAST of CSPI04G06460 vs. TrEMBL
Match: B9RCU1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692280 PE=4 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 7.2e-79
Identity = 153/209 (73.21%), Postives = 179/209 (85.65%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           M  PH     PPSGRTNLASC+VAT+FLIF+II+ILIVFFTVFKP+DPKI+V+AVQLPSF
Sbjct: 1   MSKPH----RPPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV+N T+NFTFSQYVSVKNPN+A+FSHYDS+LQLLYSGSQ+GFMFIPAGKI++G+TQYMA
Sbjct: 61  SVSNNTVNFTFSQYVSVKNPNRATFSHYDSTLQLLYSGSQVGFMFIPAGKIESGRTQYMA 120

Query: 121 ATFSVQSFPL-AAPVASVGAGPTFS--------EGMNGYRVGPILEIESKMDMAGRVRVL 180
           ATF+VQSFPL ++P A+V  GP F+           NG+RVGP +EIES++ M GRVRVL
Sbjct: 121 ATFAVQSFPLSSSPDAAVNVGPAFTGSGFPGVPGSSNGFRVGPTMEIESRIQMVGRVRVL 180

Query: 181 HFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           H FTHHVEA + CRVAIAVSDGSVLGFHC
Sbjct: 181 HIFTHHVEAKAECRVAIAVSDGSVLGFHC 205

[Close]

BLAST of CSPI04G06460 vs. TrEMBL
Match: F6HU27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01600 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 1.6e-78
Identity = 146/190 (76.84%), Postives = 175/190 (92.11%), Query Frame = 1


Query: 11  PPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTINFT 70
           PPSGRTNLASCVVAT+FLIF+IIV+LIVFF+VFKP++P I+V+AVQLPSF+++NGT+NFT
Sbjct: 7   PPSGRTNLASCVVATIFLIFIIIVVLIVFFSVFKPKEPIISVNAVQLPSFAISNGTVNFT 66

Query: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPL 130
           FSQYVSVKNPNKA FSHYDS+LQLLY G+Q+GFMFIPAGKI +G+TQYMAATF+V+SFPL
Sbjct: 67  FSQYVSVKNPNKAEFSHYDSTLQLLYGGNQVGFMFIPAGKIGSGRTQYMAATFAVESFPL 126

Query: 131 AAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAV 190
            A   SV  GPT ++G+ G+R+GP LEIES+M+MAGRVRVLHFFTHHV+A + CRV+IAV
Sbjct: 127 GAVPESV--GPTITDGLGGFRIGPNLEIESRMEMAGRVRVLHFFTHHVDARAVCRVSIAV 186

Query: 191 SDGSVLGFHC 201
           SDGSVLGFHC
Sbjct: 187 SDGSVLGFHC 194

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BLAST of CSPI04G06460 vs. TAIR10
Match: AT4G23930.1 (AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 206.8 bits (525), Expect = 1.2e-53
Identity = 102/185 (55.14%), Postives = 146/185 (78.92%), Query Frame = 1


Query: 16  TNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTINFTFSQYV 75
           +NLASC VAT+F++FLII  L V+ TVF+P+DP+I+V++V++PSFSVAN +++FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 76  SVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPLAAPVA 135
           +V+NPN+A+FSHY++ +QL Y G++IG+ F+PAG+I++G+T+ M ATFSVQSFPLAA  +
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASS 125

Query: 136 SVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAVSDGSV 195
           S  +   F    N  R G  +EIESK++MAGRVRVL  FTH + A  +CR+AI+ SDGS+
Sbjct: 126 SQISAAQF---QNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 196 LGFHC 201
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of CSPI04G06460 vs. TAIR10
Match: AT1G64450.1 (AT1G64450.1 Glycine-rich protein family)

HSP 1 Score: 190.7 bits (483), Expect = 9.0e-49
Identity = 94/136 (69.12%), Postives = 118/136 (86.76%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           M  PH       SGRTNLASC VATVFL+ L++V+L+V+FTVFKP+DPKI+V+AVQLPSF
Sbjct: 1   MAKPHDR--RRSSGRTNLASCAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           +V+N T NF+FSQYV+V+NPN+A FSHYDSS+QLLYSG+Q+GFMFIPAGKID+G+ QYMA
Sbjct: 61  AVSNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMA 120

Query: 121 ATFSVQSFPLAAPVAS 137
           ATF+V SFP++ P +S
Sbjct: 121 ATFTVHSFPISPPSSS 134

[Close]

BLAST of CSPI04G06460 vs. TAIR10
Match: AT3G54200.1 (AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 80.1 bits (196), Expect = 1.7e-15
Identity = 60/193 (31.09%), Postives = 101/193 (52.33%), Query Frame = 1


Query: 15  RTNLASCVVATVFLIFLI-IVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTI------ 74
           + N   C+  T+ LI LI IVI+I+ FT+FKP+ P   + +V +     +   +      
Sbjct: 48  KRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLL 107

Query: 75  NFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQS 134
           N T +  +S+KNPN+  FS+  SS  L Y G  IG   +PA +I A +T  +  T ++ +
Sbjct: 108 NLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMA 167

Query: 135 FPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVA 194
             L +    +      S+ M G     ++ + + + + G+V VL  F   V+++SSC ++
Sbjct: 168 DRLLSETQLL------SDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLS 227

Query: 195 IAVSDGSVLGFHC 201
           I+VSD +V   HC
Sbjct: 228 ISVSDRNVTSQHC 229

[Close]

BLAST of CSPI04G06460 vs. TAIR10
Match: AT2G46150.1 (AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 61.6 bits (148), Expect = 6.3e-10
Identity = 49/198 (24.75%), Postives = 87/198 (43.94%), Query Frame = 1


Query: 10  HPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGT--- 69
           H    R   + CV AT  ++  I++ L+  FTVF+ +DP I ++ V +       GT   
Sbjct: 30  HRSRNRIKCSICVTATSLILTTIVLTLV--FTVFRVKDPIIKMNGVMVNGLDSVTGTNQV 89

Query: 70  ----INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAAT 129
                N +    VSVKNPN ASF + +++  + Y G+ +G      GK    +T  M  T
Sbjct: 90  QLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVT 149

Query: 130 FSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATS 189
             +    L   ++  G G   S          ++ + S   + G+V+++     HV    
Sbjct: 150 VDIM---LDRILSDPGLGREISR-------SGLVNVWSYTRVGGKVKIMGIVKKHVTVKM 209

Query: 190 SCRVAIAVSDGSVLGFHC 201
           +C +A+ ++  ++    C
Sbjct: 210 NCTMAVNITGQAIQDVDC 215

[Close]

BLAST of CSPI04G06460 vs. NCBI nr
Match: gi|449462527|ref|XP_004148992.1| (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus])

HSP 1 Score: 394.4 bits (1012), Expect = 1.2e-106
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
           TSSCRVAIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CSPI04G06460 vs. NCBI nr
Match: gi|659102111|ref|XP_008451958.1| (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 368.6 bits (945), Expect = 6.8e-99
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           MGNPH  G+ PPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF
Sbjct: 1   MGNPHIPGEDPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV NGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI+AGQTQYMA
Sbjct: 61  SVTNGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLA+PVA+VGAGPTFS GMNGYRVGPILEIESKMDMAGRVRVL+FFTHHVEA
Sbjct: 121 ATFSVQSFPLASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
            SSCRVAIAVSDGSVLGFHC
Sbjct: 181 ISSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CSPI04G06460 vs. NCBI nr
Match: gi|802733826|ref|XP_012086703.1| (PREDICTED: uncharacterized protein LOC105645659 [Jatropha curcas])

HSP 1 Score: 310.1 bits (793), Expect = 2.9e-81
Identity = 157/200 (78.50%), Postives = 179/200 (89.50%), Query Frame = 1


Query: 11  PPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTINFT 70
           PPSGRTNLASC+VAT+FLIF+II+ILIVFFTVFKP+DPKI+V+AVQLPSFSV+N T+NFT
Sbjct: 7   PPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVNFT 66

Query: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPL 130
           FSQYVSVKNPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKIDAG+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 131 -AAPVASVGAGPTFSEGM---------NGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 190
            ++P A+V  GPTF+ G+          GYRVGP +EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 191 TSSCRVAIAVSDGSVLGFHC 201
            + CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of CSPI04G06460 vs. NCBI nr
Match: gi|566162577|ref|XP_002304562.2| (proline-rich family protein [Populus trichocarpa])

HSP 1 Score: 305.4 bits (781), Expect = 7.1e-80
Identity = 156/211 (73.93%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           M  PH     PPSGRTNLASC+VAT+FLIFL+I+ILIVFFTVFKP+DPKI+V++VQLPSF
Sbjct: 1   MSKPH----RPPSGRTNLASCIVATIFLIFLVIIILIVFFTVFKPKDPKISVNSVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV+N T+NFTFSQYVSVKNPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKIDAG+TQYMA
Sbjct: 61  SVSNNTVNFTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMA 120

Query: 121 ATFSVQSFPL-AAPVASVGAGPTFSEG----------MNGYRVGPILEIESKMDMAGRVR 180
           ATFSV+SFPL A+P A+V  GP F++G           NGYRVGP +EIES++ MAGRVR
Sbjct: 121 ATFSVESFPLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVR 180

Query: 181 VLHFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           VLHFFTHH+E    CRV IAVSDGSVLGFHC
Sbjct: 181 VLHFFTHHLETKVGCRVVIAVSDGSVLGFHC 207

[Close]

BLAST of CSPI04G06460 vs. NCBI nr
Match: gi|743825315|ref|XP_011022490.1| (PREDICTED: uncharacterized protein LOC105124255 [Populus euphratica])

HSP 1 Score: 303.9 bits (777), Expect = 2.1e-79
Identity = 155/211 (73.46%), Postives = 179/211 (84.83%), Query Frame = 1


Query: 1   MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSF 60
           M  PH     PPSGRTNLASC+VAT+FLIFL+I+ILIVFFTVFKP+DPKI+V++VQLPSF
Sbjct: 1   MSKPH----RPPSGRTNLASCIVATIFLIFLVIIILIVFFTVFKPKDPKISVNSVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV+N T+NFTFSQYV+VKNPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKIDAG+TQYMA
Sbjct: 61  SVSNNTVNFTFSQYVAVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMA 120

Query: 121 ATFSVQSFPL-AAPVASVGAGPTFSEG----------MNGYRVGPILEIESKMDMAGRVR 180
           ATFSV+SFPL A+P A+V  GP F++G           NGYRVGP +EIES++ MAGRVR
Sbjct: 121 ATFSVESFPLSASPDAAVNVGPAFNDGGFGGGGQPGFNNGYRVGPTMEIESRIHMAGRVR 180

Query: 181 VLHFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           VLHFFTHH+E    CRV IAVSDGSVLGFHC
Sbjct: 181 VLHFFTHHLETKVGCRVVIAVSDGSVLGFHC 207

The following BLAST results are available for this feature:

BLAST of CSPI04G06460 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI04G06460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX26_CUCSA	8.1e-107	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052640 PE=4 SV=1	[more]
A0A067JZ66_JATCU	2.0e-81	78.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20441 PE=4 SV=1	[more]
B9GXJ6_POPTR	5.0e-80	73.93	Proline-rich family protein OS=Populus trichocarpa GN=POPTR_0003s14110g PE=4 SV=...	[more]
B9RCU1_RICCO	7.2e-79	73.21	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692280 PE=4 SV=1	[more]
F6HU27_VITVI	1.6e-78	76.84	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01600 PE=4 SV=...	[more]

BLAST of CSPI04G06460 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	1.2e-53	55.14	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G64450.1	9.0e-49	69.12	Glycine-rich protein family	[more]
AT3G54200.1	1.7e-15	31.09	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G46150.1	6.3e-10	24.75	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of CSPI04G06460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462527\|ref\|XP_004148992.1\|	1.2e-106	100.00	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus]	[more]
gi\|659102111\|ref\|XP_008451958.1\|	6.8e-99	94.50	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]
gi\|802733826\|ref\|XP_012086703.1\|	2.9e-81	78.50	PREDICTED: uncharacterized protein LOC105645659 [Jatropha curcas]	[more]
gi\|566162577\|ref\|XP_002304562.2\|	7.1e-80	73.93	proline-rich family protein [Populus trichocarpa]	[more]
gi\|743825315\|ref\|XP_011022490.1\|	2.1e-79	73.46	PREDICTED: uncharacterized protein LOC105124255 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI04G06460.1	CSPI04G06460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 75..184 score: 7.0
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 11..200 score: 9.3E
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 11..200 score: 9.3E
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 30..143 score: 3.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI04G06460	Cla012811	Watermelon (97103) v1	cpiwmB308
CSPI04G06460	Csa4G052640	Cucumber (Chinese Long) v2	cpicuB182
CSPI04G06460	MELO3C016302	Melon (DHL92) v3.5.1	cpimeB295
CSPI04G06460	ClCG07G011530	Watermelon (Charleston Gray)	cpiwcgB341
CSPI04G06460	Lsi07G007260	Bottle gourd (USVL1VR-Ls)	cpilsiB304
CSPI04G06460	MELO3C016302.2	Melon (DHL92) v3.6.1	cpimedB288
CSPI04G06460	CsaV3_4G006680	Cucumber (Chinese Long) v3	cpicucB213
CSPI04G06460	Cla97C07G138290	Watermelon (97103) v2	cpiwmbB331
CSPI04G06460	Bhi01G002307	Wax gourd	cpiwgoB367
CSPI04G06460	Cucsa.114930	Cucumber (Gy14) v1	cgycpiB147
CSPI04G06460	CmaCh04G006810	Cucurbita maxima (Rimu)	cmacpiB721
CSPI04G06460	CmoCh04G007260	Cucurbita moschata (Rifu)	cmocpiB715
CSPI04G06460	CsGy4G006380	Cucumber (Gy14) v2	cgybcpiB168
CSPI04G06460	Carg13077	Silver-seed gourd	carcpiB0048

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI04G06460	Bottle gourd (USVL1VR-Ls)	cpilsiB244
CSPI04G06460	Bottle gourd (USVL1VR-Ls)	cpilsiB298
CSPI04G06460	Melon (DHL92) v3.6.1	cpimedB256
CSPI04G06460	Melon (DHL92) v3.6.1	cpimedB285
CSPI04G06460	Cucumber (Gy14) v2	cgybcpiB125
CSPI04G06460	Cucumber (Gy14) v2	cgybcpiB224
CSPI04G06460	Silver-seed gourd	carcpiB0687
CSPI04G06460	Cucumber (Chinese Long) v3	cpicucB210
CSPI04G06460	Cucumber (Chinese Long) v3	cpicucB236
CSPI04G06460	Watermelon (97103) v2	cpiwmbB276
CSPI04G06460	Watermelon (97103) v2	cpiwmbB321
CSPI04G06460	Wax gourd	cpiwgoB365
CSPI04G06460	Wild cucumber (PI 183967)	cpicpiB108
CSPI04G06460	Wild cucumber (PI 183967)	cpicpiB157
CSPI04G06460	Cucumber (Gy14) v1	cgycpiB456
CSPI04G06460	Cucurbita maxima (Rimu)	cmacpiB342
CSPI04G06460	Cucurbita moschata (Rifu)	cmocpiB285
CSPI04G06460	Cucurbita moschata (Rifu)	cmocpiB332
CSPI04G06460	Cucumber (Chinese Long) v2	cpicuB179
CSPI04G06460	Cucumber (Chinese Long) v2	cpicuB195
CSPI04G06460	Melon (DHL92) v3.5.1	cpimeB260
CSPI04G06460	Melon (DHL92) v3.5.1	cpimeB310
CSPI04G06460	Watermelon (Charleston Gray)	cpiwcgB299
CSPI04G06460	Watermelon (97103) v1	cpiwmB329
CSPI04G06460	Watermelon (97103) v1	cpiwmB334
CSPI04G06460	Cucurbita pepo (Zucchini)	cpecpiB175
CSPI04G06460	Cucurbita pepo (Zucchini)	cpecpiB223
CSPI04G06460	Cucurbita pepo (Zucchini)	cpecpiB405