CsGy4G006380 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy4G006380
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Location	Chr4 : 4617947 .. 4618549 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAA

mRNA sequence

ATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAA

Coding sequence (CDS)

ATGGGCAATCCCCACGGCCACGGCGATCACCCGCCATCTGGCCGCACCAACTTGGCGTCCTGTGTAGTTGCCACAGTCTTCTTGATCTTCCTCATCATCGTCATCCTTATCGTCTTCTTCACTGTCTTCAAGCCTCAGGATCCAAAGATCGCCGTTTCCGCCGTCCAGTTGCCGTCCTTCTCCGTCGCCAACGGCACTATCAATTTCACTTTCTCACAGTACGTCTCCGTCAAAAACCCTAACAAAGCCTCTTTCTCTCACTACGACAGTTCCCTCCAACTCCTCTACTCCGGTTCTCAAATTGGATTTATGTTCATTCCGGCCGGTAAAATCGACGCCGGTCAGACGCAGTACATGGCAGCTACCTTCTCTGTCCAGTCATTCCCGTTGGCTGCTCCAGTCGCCTCCGTTGGAGCTGGACCTACCTTCTCGGAGGGAATGAACGGGTACAGAGTCGGACCGATACTGGAGATTGAATCTAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCACGTGGAAGCCACGTCGAGCTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCATTGCTAA

Protein sequence

MGNPHGHGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAVSDGSVLGFHC

Homology

[Close]

BLAST of CsGy4G006380 vs. NCBI nr
Match: XP_004148992.1 (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hypothetical protein Csa_4G052640 [Cucumis sativus])

HSP 1 Score: 344.7 bits (883), Expect = 2.0e-91
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
           TSSCRVAIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CsGy4G006380 vs. NCBI nr
Match: XP_008451958.1 (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           MGNPH  G+ PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHIPGEDPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV NGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI+AGQTQYMA
Sbjct: 61  SVTNGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLA+PVA+VGAGPTFS GMNGYRVGPILEIESKMDMAGRVRVL+FFTHHVEA
Sbjct: 121 ATFSVQSFPLASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
            SSCRVAIAVSDGSVLGFHC
Sbjct: 181 ISSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CsGy4G006380 vs. NCBI nr
Match: XP_022941606.1 (uncharacterized protein LOC111446913 [Cucurbita moschata])

HSP 1 Score: 311.6 bits (797), Expect = 1.9e-81
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64

Query: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124

Query: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186
           SFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184

Query: 187 AIAVSDGSVLGFHC 201
           AIAVSDGSVLGFHC
Sbjct: 185 AIAVSDGSVLGFHC 198

[Close]

BLAST of CsGy4G006380 vs. NCBI nr
Match: XP_023525568.1 (uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 310.1 bits (793), Expect = 5.6e-81
Identity = 176/194 (90.72%), Postives = 184/194 (94.85%), Query Frame = 0


Query: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64

Query: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124

Query: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186
           SFPLAAP  ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 125 SFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184

Query: 187 AIAVSDGSVLGFHC 201
           AIAVSDGSVLGFHC
Sbjct: 185 AIAVSDGSVLGFHC 198

[Close]

BLAST of CsGy4G006380 vs. NCBI nr
Match: XP_022982486.1 (uncharacterized protein LOC111481290 [Cucurbita maxima])

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 49  KIAVSAVQLPSFSVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPA 108
           KIAVSAVQLPSFSVANGT+NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPA
Sbjct: 89  KIAVSAVQLPSFSVANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPA 148

Query: 109 GKIDAGQTQYMAATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRV 168
           GKID+GQTQYMAATFSVQSFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRV
Sbjct: 149 GKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRV 208

Query: 169 RVLHFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           RVLHFFTHHVEAT SCRVAIAVSDGSVLGFHC
Sbjct: 209 RVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC 240

[Close]

BLAST of CsGy4G006380 vs. TAIR10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 172.2 bits (435), Expect = 3.3e-43
Identity = 88/185 (47.57%), Postives = 126/185 (68.11%), Query Frame = 0


Query: 16  TNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGTINFTFSQYV 75
           +NLASC VA                        +I+V++V++PSFSVAN +++FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 76  SVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPLAAPVA 135
           +V+NPN+A+FSHY++ +QL Y G++IG+ F+PAG+I++G+T+ M ATFSVQSFPLAA  +
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASS 125

Query: 136 SVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAVSDGSV 195
           S  +   F    N  R G  +EIESK++MAGRVRVL  FTH + A  +CR+AI+ SDGS+
Sbjct: 126 SQISAAQF---QNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 196 LGFHC 201
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of CsGy4G006380 vs. TAIR10
Match: AT1G64450.1 (Glycine-rich protein family)

HSP 1 Score: 166.8 bits (421), Expect = 1.4e-41
Identity = 135/344 (39.24%), Postives = 162/344 (47.09%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PH       SGRTNLASC VAXXXXXXXXXXXXXXXXXX      KI+V+AVQLPSF
Sbjct: 1   MAKPHDR--RRSSGRTNLASCAVAXXXXXXXXXXXXXXXXXXFKPKDPKISVNAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           +V+N T NF+FSQYV+V+NPN+A FSHYDSS+QLLYSG+Q+GFMFIPAGKID+G+ QYMA
Sbjct: 61  AVSNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMA 120

Query: 121 ATFSVQSFPLAAP----VASVGA----------GPTFSEGMNGY---------------- 180
           ATF+V SFP++ P    +++V A          GP                         
Sbjct: 121 ATFTVHSFPISPPSSSAISTVSAAVIPDSPIIPGPXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 ------------------------------------------------------------ 201
                                                                       
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

[Close]

BLAST of CsGy4G006380 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 62.0 bits (149), Expect = 4.8e-10
Identity = 42/134 (31.34%), Postives = 71/134 (52.99%), Query Frame = 0


Query: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126
           +N T +  +S+KNPN+  FS+  SS  L Y G  IG   +PA +I A +T  +  T ++ 
Sbjct: 107 LNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLM 166

Query: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186
           +  L +           S+ M G     ++ + + + + G+V VL  F   V+++SSC +
Sbjct: 167 ADRLLSET------QLLSDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDL 226

Query: 187 AIAVSDGSVLGFHC 201
           +I+VSD +V   HC
Sbjct: 227 SISVSDRNVTSQHC 229

[Close]

BLAST of CsGy4G006380 vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 43.9 bits (102), Expect = 1.4e-04
Identity = 30/126 (23.81%), Postives = 56/126 (44.44%), Query Frame = 0


Query: 75  VSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPLAAPV 134
           VSVKNPN ASF + +++  + Y G+ +G      GK    +T  M  T  +    L   +
Sbjct: 100 VSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVTVDIM---LDRIL 159

Query: 135 ASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAVSDGS 194
           +  G G   S          ++ + S   + G+V+++     HV    +C +A+ ++  +
Sbjct: 160 SDPGLGREISR-------SGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQA 215

Query: 195 VLGFHC 201
           +    C
Sbjct: 220 IQDVDC 215

[Close]

BLAST of CsGy4G006380 vs. TrEMBL
Match: tr|A0A0A0KX26|A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-91
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
           TSSCRVAIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CsGy4G006380 vs. TrEMBL
Match: tr|A0A1S3BSP1|A0A1S3BSP1_CUCME (uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 8.0e-84
Identity = 189/200 (94.50%), Postives = 194/200 (97.00%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           MGNPH  G+ PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHIPGEDPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV NGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI+AGQTQYMA
Sbjct: 61  SVTNGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLA+PVA+VGAGPTFS GMNGYRVGPILEIESKMDMAGRVRVL+FFTHHVEA
Sbjct: 121 ATFSVQSFPLASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEA 180

Query: 181 TSSCRVAIAVSDGSVLGFHC 201
            SSCRVAIAVSDGSVLGFHC
Sbjct: 181 ISSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of CsGy4G006380 vs. TrEMBL
Match: tr|A0A067JZ66|A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 1.2e-66
Identity = 159/200 (79.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGTINFT 70
           PPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXX I+V+AVQLPSFSV+N T+NFT
Sbjct: 7   PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXISVNAVQLPSFSVSNNTVNFT 66

Query: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPL 130
           FSQYVSVKNPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKIDAG+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 131 -AAPVASVGAGPTFSEGM---------NGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 190
            ++P A+V  GPTF+ G+          GYRVGP +EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 191 TSSCRVAIAVSDGSVLGFHC 201
            + CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of CsGy4G006380 vs. TrEMBL
Match: tr|F6HU27|F6HU27_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=1)

HSP 1 Score: 257.3 bits (656), Expect = 2.8e-65
Identity = 149/190 (78.42%), Postives = 172/190 (90.53%), Query Frame = 0


Query: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGTINFT 70
           PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXX    I+V+AVQLPSF+++NGT+NFT
Sbjct: 7   PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXKEPIISVNAVQLPSFAISNGTVNFT 66

Query: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQSFPL 130
           FSQYVSVKNPNKA FSHYDS+LQLLY G+Q+GFMFIPAGKI +G+TQYMAATF+V+SFPL
Sbjct: 67  FSQYVSVKNPNKAEFSHYDSTLQLLYGGNQVGFMFIPAGKIGSGRTQYMAATFAVESFPL 126

Query: 131 AAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRVAIAV 190
            A   SV  GPT ++G+ G+R+GP LEIES+M+MAGRVRVLHFFTHHV+A + CRV+IAV
Sbjct: 127 GAVPESV--GPTITDGLGGFRIGPNLEIESRMEMAGRVRVLHFFTHHVDARAVCRVSIAV 186

Query: 191 SDGSVLGFHC 201
           SDGSVLGFHC
Sbjct: 187 SDGSVLGFHC 194

[Close]

BLAST of CsGy4G006380 vs. TrEMBL
Match: tr|B9GXJ6|B9GXJ6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G141200v3 PE=4 SV=2)

HSP 1 Score: 254.6 bits (649), Expect = 1.8e-64
Identity = 157/211 (74.41%), Postives = 176/211 (83.41%), Query Frame = 0


Query: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PH     PPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXX  +V++VQLPSF
Sbjct: 1   MSKPH----RPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXXSVNSVQLPSF 60

Query: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120
           SV+N T+NFTFSQYVSVKNPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKIDAG+TQYMA
Sbjct: 61  SVSNNTVNFTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMA 120

Query: 121 ATFSVQSFPL-AAPVASVGAGPTFSEG----------MNGYRVGPILEIESKMDMAGRVR 180
           ATFSV+SFPL A+P A+V  GP F++G           NGYRVGP +EIES++ MAGRVR
Sbjct: 121 ATFSVESFPLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVR 180

Query: 181 VLHFFTHHVEATSSCRVAIAVSDGSVLGFHC 201
           VLHFFTHH+E    CRV IAVSDGSVLGFHC
Sbjct: 181 VLHFFTHHLETKVGCRVVIAVSDGSVLGFHC 207

The following BLAST results are available for this feature:

BLAST of CsGy4G006380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148992.1	2.0e-91	100.00	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hy...	[more]
XP_008451958.1	1.2e-83	94.50	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]
XP_022941606.1	1.9e-81	91.24	uncharacterized protein LOC111446913 [Cucurbita moschata]	[more]
XP_023525568.1	5.6e-81	90.72	uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo]	[more]
XP_022982486.1	1.0e-74	93.42	uncharacterized protein LOC111481290 [Cucurbita maxima]	[more]

BLAST of CsGy4G006380 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	3.3e-43	47.57	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	1.4e-41	39.24	Glycine-rich protein family	[more]
AT3G54200.1	4.8e-10	31.34	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	1.4e-04	23.81	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of CsGy4G006380 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CsGy4G006380 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KX26\|A0A0A0KX26_CUCSA	1.4e-91	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1	[more]
tr\|A0A1S3BSP1\|A0A1S3BSP1_CUCME	8.0e-84	94.50	uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=...	[more]
tr\|A0A067JZ66\|A0A067JZ66_JATCU	1.2e-66	79.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1	[more]
tr\|F6HU27\|F6HU27_VITVI	2.8e-65	78.42	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=...	[more]
tr\|B9GXJ6\|B9GXJ6_POPTR	1.8e-64	74.41	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G141200v3 PE=...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy4G006380.1	CsGy4G006380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 75..184 e-value: 1.0E-9 score: 38.8
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 9..200
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 9..200
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 30..143

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy4G006380	Cla012811	Watermelon (97103) v1	cgybwmB283
CsGy4G006380	Csa4G052640	Cucumber (Chinese Long) v2	cgybcuB165
CsGy4G006380	MELO3C016302	Melon (DHL92) v3.5.1	cgybmeB256
CsGy4G006380	ClCG07G011530	Watermelon (Charleston Gray)	cgybwcgB302
CsGy4G006380	CSPI04G06460	Wild cucumber (PI 183967)	cgybcpiB168
CsGy4G006380	CmaCh04G006810	Cucurbita maxima (Rimu)	cgybcmaB547
CsGy4G006380	CmoCh04G007260	Cucurbita moschata (Rifu)	cgybcmoB521
CsGy4G006380	Lsi07G007260	Bottle gourd (USVL1VR-Ls)	cgyblsiB278
CsGy4G006380	Cp4.1LG01g00540	Cucurbita pepo (Zucchini)	cgybcpeB508
CsGy4G006380	MELO3C016302.2	Melon (DHL92) v3.6.1	cgybmedB253
CsGy4G006380	CsaV3_4G006680	Cucumber (Chinese Long) v3	cgybcucB171
CsGy4G006380	Cla97C07G138290	Watermelon (97103) v2	cgybwmbB304
CsGy4G006380	Bhi01G002307	Wax gourd	cgybwgoB352
CsGy4G006380	Carg13077	Silver-seed gourd	carcgybB0044

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy4G006380	Cucumber (Gy14) v2	cgybcgybB084
CsGy4G006380	Cucumber (Gy14) v2	cgybcgybB127
CsGy4G006380	Cucurbita maxima (Rimu)	cgybcmaB498
CsGy4G006380	Cucurbita moschata (Rifu)	cgybcmoB460
CsGy4G006380	Cucurbita moschata (Rifu)	cgybcmoB467
CsGy4G006380	Cucurbita pepo (Zucchini)	cgybcpeB487
CsGy4G006380	Cucumber (Chinese Long) v2	cgybcuB163
CsGy4G006380	Cucumber (Chinese Long) v2	cgybcuB182
CsGy4G006380	Bottle gourd (USVL1VR-Ls)	cgyblsiB231
CsGy4G006380	Bottle gourd (USVL1VR-Ls)	cgyblsiB274
CsGy4G006380	Melon (DHL92) v3.5.1	cgybmeB228
CsGy4G006380	Melon (DHL92) v3.5.1	cgybmeB269
CsGy4G006380	Melon (DHL92) v3.6.1	cgybmedB229
CsGy4G006380	Melon (DHL92) v3.6.1	cgybmedB250
CsGy4G006380	Melon (DHL92) v3.6.1	cgybmedB266
CsGy4G006380	Watermelon (Charleston Gray)	cgybwcgB267
CsGy4G006380	Watermelon (97103) v1	cgybwmB304
CsGy4G006380	Watermelon (97103) v1	cgybwmB300
CsGy4G006380	Wild cucumber (PI 183967)	cgybcpiB166
CsGy4G006380	Wild cucumber (PI 183967)	cgybcpiB185
CsGy4G006380	Silver-seed gourd	carcgybB0652
CsGy4G006380	Cucumber (Chinese Long) v3	cgybcucB170
CsGy4G006380	Cucumber (Chinese Long) v3	cgybcucB185
CsGy4G006380	Watermelon (97103) v2	cgybwmbB256
CsGy4G006380	Watermelon (97103) v2	cgybwmbB294