Cp4.1LG01g00540 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG01g00540
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein
Location	Cp4.1LG01 : 3538009 .. 3538605 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAACACCACGACCACCACCCGCCGTCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTTAATTTCACTTTCTCTCAGTACGTCTCTGTTAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCCCAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACCTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGCCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

mRNA sequence

ATGAGGAAACACCACGACCACCACCCGCCGTCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTTAATTTCACTTTCTCTCAGTACGTCTCTGTTAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCCCAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACCTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGCCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Coding sequence (CDS)

ATGAGGAAACACCACGACCACCACCCGCCGTCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTTAATTTCACTTTCTCTCAGTACGTCTCTGTTAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCCCAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACCTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGCCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Protein sequence

MRKHHDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC

Homology

[Close]

BLAST of Cp4.1LG01g00540 vs. TrEMBL
Match: A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 6.3e-96
Identity = 177/194 (91.24%), Postives = 188/194 (96.91%), Query Frame = 1


Query: 5   HDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+VAT+FLIF+IIV+LIVFFTVFKPQDPKIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAP  ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Cp4.1LG01g00540 vs. TrEMBL
Match: A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 5.8e-81
Identity = 156/200 (78.00%), Postives = 178/200 (89.00%), Query Frame = 1


Query: 9   PPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIVATIFLIFVII++LIVFFTVFKP+DPKI+V+AVQLPSFSV+N TVNFT
Sbjct: 7   PPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 129 -AAPATAIGAGPTYSEGM---------NGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 188
            ++P  A+  GPT++ G+          GYR+GPT+EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 189 TLSCRVAIAVSDGSVLGFHC 199
              CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of Cp4.1LG01g00540 vs. TrEMBL
Match: B9GXJ6_POPTR (Proline-rich family protein OS=Populus trichocarpa GN=POPTR_0003s14110g PE=4 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 1.1e-79
Identity = 151/203 (74.38%), Postives = 178/203 (87.68%), Query Frame = 1


Query: 7   HHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVN 66
           H PPSGRTNLASCIVATIFLIF++I++LIVFFTVFKP+DPKI+V++VQLPSFSV+N TVN
Sbjct: 5   HRPPSGRTNLASCIVATIFLIFLVIIILIVFFTVFKPKDPKISVNSVQLPSFSVSNNTVN 64

Query: 67  FTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSF 126
           FTFSQYVSV+NPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKID+G+TQYMAATFSV+SF
Sbjct: 65  FTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMAATFSVESF 124

Query: 127 PL-AAPATAIGAGPTYSEG----------MNGYRIGPTLEIESKMDMAGRVRVLHFFTHH 186
           PL A+P  A+  GP +++G           NGYR+GPT+EIES++ MAGRVRVLHFFTHH
Sbjct: 125 PLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVRVLHFFTHH 184

Query: 187 VEATLSCRVAIAVSDGSVLGFHC 199
           +E  + CRV IAVSDGSVLGFHC
Sbjct: 185 LETKVGCRVVIAVSDGSVLGFHC 207

[Close]

BLAST of Cp4.1LG01g00540 vs. TrEMBL
Match: B9RCU1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692280 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 2.4e-79
Identity = 152/201 (75.62%), Postives = 176/201 (87.56%), Query Frame = 1


Query: 7   HHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVN 66
           H PPSGRTNLASCIVATIFLIFVII++LIVFFTVFKP+DPKI+V+AVQLPSFSV+N TVN
Sbjct: 5   HRPPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVN 64

Query: 67  FTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSF 126
           FTFSQYVSV+NPN+A+FSHYDS+LQLLYSGSQ+GFMFIPAGKI+SG+TQYMAATF+VQSF
Sbjct: 65  FTFSQYVSVKNPNRATFSHYDSTLQLLYSGSQVGFMFIPAGKIESGRTQYMAATFAVQSF 124

Query: 127 PL-AAPATAIGAGPTYS--------EGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVE 186
           PL ++P  A+  GP ++           NG+R+GPT+EIES++ M GRVRVLH FTHHVE
Sbjct: 125 PLSSSPDAAVNVGPAFTGSGFPGVPGSSNGFRVGPTMEIESRIQMVGRVRVLHIFTHHVE 184

Query: 187 ATLSCRVAIAVSDGSVLGFHC 199
           A   CRVAIAVSDGSVLGFHC
Sbjct: 185 AKAECRVAIAVSDGSVLGFHC 205

[Close]

BLAST of Cp4.1LG01g00540 vs. TrEMBL
Match: F6HU27_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01600 PE=4 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 2.7e-78
Identity = 147/190 (77.37%), Postives = 174/190 (91.58%), Query Frame = 1


Query: 9   PPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+VATIFLIF+IIVVLIVFF+VFKP++P I+V+AVQLPSF+++NGTVNFT
Sbjct: 7   PPSGRTNLASCVVATIFLIFIIIVVLIVFFSVFKPKEPIISVNAVQLPSFAISNGTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKA FSHYDS+LQLLY G+Q+GFMFIPAGKI SG+TQYMAATF+V+SFPL
Sbjct: 67  FSQYVSVKNPNKAEFSHYDSTLQLLYGGNQVGFMFIPAGKIGSGRTQYMAATFAVESFPL 126

Query: 129 AAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
            A   ++  GPT ++G+ G+RIGP LEIES+M+MAGRVRVLHFFTHHV+A   CRV+IAV
Sbjct: 127 GAVPESV--GPTITDGLGGFRIGPNLEIESRMEMAGRVRVLHFFTHHVDARAVCRVSIAV 186

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 187 SDGSVLGFHC 194

[Close]

BLAST of Cp4.1LG01g00540 vs. TAIR10
Match: AT4G23930.1 (AT4G23930.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 208.4 bits (529), Expect = 4.1e-54
Identity = 104/185 (56.22%), Postives = 148/185 (80.00%), Query Frame = 1


Query: 14  TNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFTFSQYV 73
           +NLASC VAT+F++F+II  L V+ TVF+P+DP+I+V++V++PSFSVAN +V+FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 74  SVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPAT 133
           +VRNPN+A+FSHY++ +QL Y G++IG+ F+PAG+I+SG+T+ M ATFSVQSFPLAA   
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAA--- 125

Query: 134 AIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSV 193
           A  +  + ++  N  R G T+EIESK++MAGRVRVL  FTH + A  +CR+AI+ SDGS+
Sbjct: 126 ASSSQISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 194 LGFHC 199
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of Cp4.1LG01g00540 vs. TAIR10
Match: AT1G64450.1 (AT1G64450.1 Glycine-rich protein family)

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-50
Identity = 94/134 (70.15%), Postives = 120/134 (89.55%), Query Frame = 1


Query: 1   MRKHHDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSV 60
           M K HD    SGRTNLASC VAT+FL+ +++V+L+V+FTVFKP+DPKI+V+AVQLPSF+V
Sbjct: 1   MAKPHDRRRSSGRTNLASCAVATVFLLILLVVLLVVYFTVFKPKDPKISVNAVQLPSFAV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           +N T NF+FSQYV+VRNPN+A FSHYDSS+QLLYSG+Q+GFMFIPAGKIDSG+ QYMAAT
Sbjct: 61  SNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAAT 120

Query: 121 FSVQSFPLAAPATA 135
           F+V SFP++ P+++
Sbjct: 121 FTVHSFPISPPSSS 134

[Close]

BLAST of Cp4.1LG01g00540 vs. TAIR10
Match: AT3G54200.1 (AT3G54200.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 72.4 bits (176), Expect = 3.5e-13
Identity = 57/193 (29.53%), Postives = 99/193 (51.30%), Query Frame = 1


Query: 13  RTNLASCIVATIFLIFVI-IVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTV------ 72
           + N   CI  TI LI +I IV++I+ FT+FKP+ P   + +V +     +   +      
Sbjct: 48  KRNCKICICFTILLILLIAIVIVILAFTLFKPKRPTTTIDSVTVDRLQASVNPLLLKVLL 107

Query: 73  NFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQS 132
           N T +  +S++NPN+  FS+  SS  L Y G  IG   +PA +I + +T  +  T ++ +
Sbjct: 108 NLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLMA 167

Query: 133 FPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVA 192
             L +    +      S+ M G      + + + + + G+V VL  F   V+++ SC ++
Sbjct: 168 DRLLSETQLL------SDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDLS 227

Query: 193 IAVSDGSVLGFHC 199
           I+VSD +V   HC
Sbjct: 228 ISVSDRNVTSQHC 229

[Close]

BLAST of Cp4.1LG01g00540 vs. TAIR10
Match: AT2G46150.1 (AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 57.8 bits (138), Expect = 9.0e-09
Identity = 47/198 (23.74%), Postives = 86/198 (43.43%), Query Frame = 1


Query: 8   HPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGT--- 67
           H    R   + C+ AT  ++  I++ L+  FTVF+ +DP I ++ V +       GT   
Sbjct: 30  HRSRNRIKCSICVTATSLILTTIVLTLV--FTVFRVKDPIIKMNGVMVNGLDSVTGTNQV 89

Query: 68  ----VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 127
                N +    VSV+NPN ASF + +++  + Y G+ +G      GK    +T  M  T
Sbjct: 90  QLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKGTLVGEAHGLPGKARPHRTSRMNVT 149

Query: 128 FSVQSFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 187
             +    L    +  G G   S           + + S   + G+V+++     HV   +
Sbjct: 150 VDIM---LDRILSDPGLGREISR-------SGLVNVWSYTRVGGKVKIMGIVKKHVTVKM 209

Query: 188 SCRVAIAVSDGSVLGFHC 199
           +C +A+ ++  ++    C
Sbjct: 210 NCTMAVNITGQAIQDVDC 215

[Close]

BLAST of Cp4.1LG01g00540 vs. NCBI nr
Match: gi|449462527|ref|XP_004148992.1| (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus])

HSP 1 Score: 358.2 bits (918), Expect = 9.1e-96
Identity = 177/194 (91.24%), Postives = 188/194 (96.91%), Query Frame = 1


Query: 5   HDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+VAT+FLIF+IIV+LIVFFTVFKPQDPKIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAP  ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Cp4.1LG01g00540 vs. NCBI nr
Match: gi|659102111|ref|XP_008451958.1| (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 342.8 bits (878), Expect = 4.0e-91
Identity = 170/190 (89.47%), Postives = 183/190 (96.32%), Query Frame = 1


Query: 9   PPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+VAT+FLIF+IIV+LIVFFTVFKPQDPKIAVSAVQLPSFSV NGT+NFT
Sbjct: 11  PPSGRTNLASCVVATVFLIFLIIVILIVFFTVFKPQDPKIAVSAVQLPSFSVTNGTINFT 70

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI++GQTQYMAATFSVQSFPL
Sbjct: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMAATFSVQSFPL 130

Query: 129 AAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
           A+P  A+GAGPT+S GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA  SCRVAIAV
Sbjct: 131 ASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEAISSCRVAIAV 190

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 191 SDGSVLGFHC 200

[Close]

BLAST of Cp4.1LG01g00540 vs. NCBI nr
Match: gi|802733826|ref|XP_012086703.1| (PREDICTED: uncharacterized protein LOC105645659 [Jatropha curcas])

HSP 1 Score: 308.5 bits (789), Expect = 8.3e-81
Identity = 156/200 (78.00%), Postives = 178/200 (89.00%), Query Frame = 1


Query: 9   PPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIVATIFLIFVII++LIVFFTVFKP+DPKI+V+AVQLPSFSV+N TVNFT
Sbjct: 7   PPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 129 -AAPATAIGAGPTYSEGM---------NGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 188
            ++P  A+  GPT++ G+          GYR+GPT+EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 189 TLSCRVAIAVSDGSVLGFHC 199
              CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of Cp4.1LG01g00540 vs. NCBI nr
Match: gi|566162577|ref|XP_002304562.2| (proline-rich family protein [Populus trichocarpa])

HSP 1 Score: 304.3 bits (778), Expect = 1.6e-79
Identity = 151/203 (74.38%), Postives = 178/203 (87.68%), Query Frame = 1


Query: 7   HHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVN 66
           H PPSGRTNLASCIVATIFLIF++I++LIVFFTVFKP+DPKI+V++VQLPSFSV+N TVN
Sbjct: 5   HRPPSGRTNLASCIVATIFLIFLVIIILIVFFTVFKPKDPKISVNSVQLPSFSVSNNTVN 64

Query: 67  FTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSF 126
           FTFSQYVSV+NPN+A FSH+DS+LQLLYSGSQIGFMFIPAGKID+G+TQYMAATFSV+SF
Sbjct: 65  FTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMAATFSVESF 124

Query: 127 PL-AAPATAIGAGPTYSEG----------MNGYRIGPTLEIESKMDMAGRVRVLHFFTHH 186
           PL A+P  A+  GP +++G           NGYR+GPT+EIES++ MAGRVRVLHFFTHH
Sbjct: 125 PLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVRVLHFFTHH 184

Query: 187 VEATLSCRVAIAVSDGSVLGFHC 199
           +E  + CRV IAVSDGSVLGFHC
Sbjct: 185 LETKVGCRVVIAVSDGSVLGFHC 207

[Close]

BLAST of Cp4.1LG01g00540 vs. NCBI nr
Match: gi|255537817|ref|XP_002509975.1| (PREDICTED: uncharacterized protein LOC8288025 [Ricinus communis])

HSP 1 Score: 303.1 bits (775), Expect = 3.5e-79
Identity = 152/201 (75.62%), Postives = 176/201 (87.56%), Query Frame = 1


Query: 7   HHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVN 66
           H PPSGRTNLASCIVATIFLIFVII++LIVFFTVFKP+DPKI+V+AVQLPSFSV+N TVN
Sbjct: 5   HRPPSGRTNLASCIVATIFLIFVIIIILIVFFTVFKPKDPKISVNAVQLPSFSVSNNTVN 64

Query: 67  FTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSF 126
           FTFSQYVSV+NPN+A+FSHYDS+LQLLYSGSQ+GFMFIPAGKI+SG+TQYMAATF+VQSF
Sbjct: 65  FTFSQYVSVKNPNRATFSHYDSTLQLLYSGSQVGFMFIPAGKIESGRTQYMAATFAVQSF 124

Query: 127 PL-AAPATAIGAGPTYS--------EGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVE 186
           PL ++P  A+  GP ++           NG+R+GPT+EIES++ M GRVRVLH FTHHVE
Sbjct: 125 PLSSSPDAAVNVGPAFTGSGFPGVPGSSNGFRVGPTMEIESRIQMVGRVRVLHIFTHHVE 184

Query: 187 ATLSCRVAIAVSDGSVLGFHC 199
           A   CRVAIAVSDGSVLGFHC
Sbjct: 185 AKAECRVAIAVSDGSVLGFHC 205

The following BLAST results are available for this feature:

BLAST of Cp4.1LG01g00540 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG01g00540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KX26_CUCSA	6.3e-96	91.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G052640 PE=4 SV=1	[more]
A0A067JZ66_JATCU	5.8e-81	78.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20441 PE=4 SV=1	[more]
B9GXJ6_POPTR	1.1e-79	74.38	Proline-rich family protein OS=Populus trichocarpa GN=POPTR_0003s14110g PE=4 SV=...	[more]
B9RCU1_RICCO	2.4e-79	75.62	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1692280 PE=4 SV=1	[more]
F6HU27_VITVI	2.7e-78	77.37	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_02s0025g01600 PE=4 SV=...	[more]

BLAST of Cp4.1LG01g00540 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	4.1e-54	56.22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT1G64450.1	1.2e-50	70.15	Glycine-rich protein family	[more]
AT3G54200.1	3.5e-13	29.53	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]
AT2G46150.1	9.0e-09	23.74	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cp4.1LG01g00540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449462527\|ref\|XP_004148992.1\|	9.1e-96	91.24	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus]	[more]
gi\|659102111\|ref\|XP_008451958.1\|	4.0e-91	89.47	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]
gi\|802733826\|ref\|XP_012086703.1\|	8.3e-81	78.00	PREDICTED: uncharacterized protein LOC105645659 [Jatropha curcas]	[more]
gi\|566162577\|ref\|XP_002304562.2\|	1.6e-79	74.38	proline-rich family protein [Populus trichocarpa]	[more]
gi\|255537817\|ref\|XP_002509975.1\|	3.5e-79	75.62	PREDICTED: uncharacterized protein LOC8288025 [Ricinus communis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG01g00540.1	Cp4.1LG01g00540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA-14	PFAM	PF03168	LEA_2	coord: 73..182 score: 1.7
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 7..198 score: 1.3E
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 7..198 score: 1.3E
None	No IPR available	unknown	SSF117070	LEA14-like	coord: 28..147 score: 8.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG01g00540	Cucsa.114930	Cucumber (Gy14) v1	cgycpeB0269
Cp4.1LG01g00540	CmaCh04G006810	Cucurbita maxima (Rimu)	cmacpeB720
Cp4.1LG01g00540	CmoCh04G007260	Cucurbita moschata (Rifu)	cmocpeB673
Cp4.1LG01g00540	Cla012811	Watermelon (97103) v1	cpewmB422
Cp4.1LG01g00540	Csa4G052640	Cucumber (Chinese Long) v2	cpecuB406
Cp4.1LG01g00540	ClCG07G011530	Watermelon (Charleston Gray)	cpewcgB408
Cp4.1LG01g00540	Lsi07G007260	Bottle gourd (USVL1VR-Ls)	cpelsiB378
Cp4.1LG01g00540	Bhi01G002307	Wax gourd	cpewgoB0518
Cp4.1LG01g00540	CsGy4G006380	Cucumber (Gy14) v2	cgybcpeB508
Cp4.1LG01g00540	Carg13077	Silver-seed gourd	carcpeB0061

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG01g00540	Cucumber (Chinese Long) v3	cpecucB0503
Cp4.1LG01g00540	Cucumber (Chinese Long) v3	cpecucB0538
Cp4.1LG01g00540	Cucurbita pepo (Zucchini)	cpecpeB206
Cp4.1LG01g00540	Cucurbita pepo (Zucchini)	cpecpeB233
Cp4.1LG01g00540	Cucurbita maxima (Rimu)	cmacpeB324
Cp4.1LG01g00540	Cucurbita maxima (Rimu)	cmacpeB350
Cp4.1LG01g00540	Cucurbita moschata (Rifu)	cmocpeB287
Cp4.1LG01g00540	Cucurbita moschata (Rifu)	cmocpeB313
Cp4.1LG01g00540	Wild cucumber (PI 183967)	cpecpiB405
Cp4.1LG01g00540	Wild cucumber (PI 183967)	cpecpiB431
Cp4.1LG01g00540	Cucumber (Chinese Long) v2	cpecuB432
Cp4.1LG01g00540	Melon (DHL92) v3.5.1	cpemeB362
Cp4.1LG01g00540	Melon (DHL92) v3.5.1	cpemeB415
Cp4.1LG01g00540	Melon (DHL92) v3.5.1	cpemeB427
Cp4.1LG01g00540	Melon (DHL92) v3.6.1	cpemedB486
Cp4.1LG01g00540	Melon (DHL92) v3.6.1	cpemedB499