Cla97C07G138290 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G138290
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Late embryogenesis abundant protein, LEA-14
Location	Cla97Chr07 : 25997947 .. 25998543 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAAACCCCACGGCCACCACCCGCCGTCCGGCCGCACGAACTTGGCGTCATGTATAGTCGCCACGATCTTCTTAATCTTCCTCGTCATCGTCGTTCTCATCGTCTTCTTCACCGTCTTCAAGCCTCAGGATCCGAAGATCGCCGTTTCCGCGGTCCAGTTGCCGTCCTTCTCCGTCGCTCATGGCACCATCAATTTCACTTTCTCTCAGTACGTCTCCGTCAGGAACCCTAACAAAGCTTCTTTCTCTCACTACGACAGTTCGGTTCAGCTCCTCTACTCCGGTTCTCAAATTGGATTCATGTTCATTCCCGCCAGTAAAATCGACGCCGGTCAGACGCAGTACATGGTAGCAACCTTCTCCGTCCAGTCATTCCCGTTGGCCGCTCCAGTCACCGCCGTTGGAGCTGGACCGACCTTCTCGGAAGGAATGAACGGGTACAGAATCGGACCGACGCTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATCGAGTTGCAGAATCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

mRNA sequence

ATGAGCAAACCCCACGGCCACCACCCGCCGTCCGGCCGCACGAACTTGGCGTCATGTATAGTCGCCACGATCTTCTTAATCTTCCTCGTCATCGTCGTTCTCATCGTCTTCTTCACCGTCTTCAAGCCTCAGGATCCGAAGATCGCCGTTTCCGCGGTCCAGTTGCCGTCCTTCTCCGTCGCTCATGGCACCATCAATTTCACTTTCTCTCAGTACGTCTCCGTCAGGAACCCTAACAAAGCTTCTTTCTCTCACTACGACAGTTCGGTTCAGCTCCTCTACTCCGGTTCTCAAATTGGATTCATGTTCATTCCCGCCAGTAAAATCGACGCCGGTCAGACGCAGTACATGGTAGCAACCTTCTCCGTCCAGTCATTCCCGTTGGCCGCTCCAGTCACCGCCGTTGGAGCTGGACCGACCTTCTCGGAAGGAATGAACGGGTACAGAATCGGACCGACGCTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATCGAGTTGCAGAATCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Coding sequence (CDS)

ATGAGCAAACCCCACGGCCACCACCCGCCGTCCGGCCGCACGAACTTGGCGTCATGTATAGTCGCCACGATCTTCTTAATCTTCCTCGTCATCGTCGTTCTCATCGTCTTCTTCACCGTCTTCAAGCCTCAGGATCCGAAGATCGCCGTTTCCGCGGTCCAGTTGCCGTCCTTCTCCGTCGCTCATGGCACCATCAATTTCACTTTCTCTCAGTACGTCTCCGTCAGGAACCCTAACAAAGCTTCTTTCTCTCACTACGACAGTTCGGTTCAGCTCCTCTACTCCGGTTCTCAAATTGGATTCATGTTCATTCCCGCCAGTAAAATCGACGCCGGTCAGACGCAGTACATGGTAGCAACCTTCTCCGTCCAGTCATTCCCGTTGGCCGCTCCAGTCACCGCCGTTGGAGCTGGACCGACCTTCTCGGAAGGAATGAACGGGTACAGAATCGGACCGACGCTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATCGAGTTGCAGAATCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Protein sequence

MSKPHGHHPPSGRTNLASCIVATIFLIFLVIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATSSCRIAIAVSDGSVLGFHC

Homology

[Close]

BLAST of Cla97C07G138290 vs. NCBI nr
Match: XP_022941606.1 (uncharacterized protein LOC111446913 [Cucurbita moschata])

HSP 1 Score: 317.8 bits (813), Expect = 2.7e-83
Identity = 180/198 (90.91%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           M K H HHPPSGRTNLASCIV  XXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           A+GT+NFTFSQYVSVRNPNKASFSHYDSS+QLLYSGSQIGFMFIPA KID+GQTQYM AT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATS 180
           FSVQSFPLAAPVTA+GAGPT+SEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEAT 
Sbjct: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRIAIAVSDGSVLGFHC 199
           SCR+AIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Cla97C07G138290 vs. NCBI nr
Match: XP_004148992.1 (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hypothetical protein Csa_4G052640 [Cucumis sativus])

HSP 1 Score: 317.4 bits (812), Expect = 3.5e-83
Identity = 184/200 (92.00%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MSKPHGH--HPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PHGH  HPPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMV 120
           SVA+GTINFTFSQYVSV+NPNKASFSHYDSS+QLLYSGSQIGFMFIPA KIDAGQTQYM 
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPV +VGAGPTFSEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRIAIAVSDGSVLGFHC 199
           TSSCR+AIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of Cla97C07G138290 vs. NCBI nr
Match: XP_023525568.1 (uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 316.2 bits (809), Expect = 7.7e-83
Identity = 179/198 (90.40%), Postives = 186/198 (93.94%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           M K H HHPPSGRTNLASCIV  XXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           A+GT+NFTFSQYVSVRNPNKASFSHYDSS+QLLYSGSQIGFMFIPA KID+GQTQYM AT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATS 180
           FSVQSFPLAAP TA+GAGPT+SEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEAT 
Sbjct: 121 FSVQSFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRIAIAVSDGSVLGFHC 199
           SCR+AIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Cla97C07G138290 vs. NCBI nr
Match: XP_008451958.1 (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 300.1 bits (767), Expect = 5.7e-78
Identity = 177/200 (88.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 1   MSKPH--GHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PH  G  PPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHIPGEDPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMV 120
           SV +GTINFTFSQYVSV+NPNKASFSHYDSS+QLLYSGSQIGFMFIPA KI+AGQTQYM 
Sbjct: 61  SVTNGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLA+PV AVGAGPTFS GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA
Sbjct: 121 ATFSVQSFPLASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEA 180

Query: 181 TSSCRIAIAVSDGSVLGFHC 199
            SSCR+AIAVSDGSVLGFHC
Sbjct: 181 ISSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of Cla97C07G138290 vs. NCBI nr
Match: XP_022982486.1 (uncharacterized protein LOC111481290 [Cucurbita maxima])

HSP 1 Score: 289.3 bits (739), Expect = 1.0e-74
Identity = 142/152 (93.42%), Postives = 149/152 (98.03%), Query Frame = 0


Query: 47  KIAVSAVQLPSFSVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPA 106
           KIAVSAVQLPSFSVA+GT+NFTFSQYVSVRNPNKASFSHYDSS+QLLYSGSQIGFMFIPA
Sbjct: 89  KIAVSAVQLPSFSVANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPA 148

Query: 107 SKIDAGQTQYMVATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRV 166
            KID+GQTQYM ATFSVQSFPLAAPVTA+GAGPT+SEGMNGYRIGPTLEIESKMDMAGRV
Sbjct: 149 GKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRV 208

Query: 167 RVLHFFTHHVEATSSCRIAIAVSDGSVLGFHC 199
           RVLHFFTHHVEAT SCR+AIAVSDGSVLGFHC
Sbjct: 209 RVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC 240

[Close]

BLAST of Cla97C07G138290 vs. TrEMBL
Match: tr|A0A0A0KX26|A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 317.4 bits (812), Expect = 2.3e-83
Identity = 184/200 (92.00%), Postives = 191/200 (95.50%), Query Frame = 0


Query: 1   MSKPHGH--HPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PHGH  HPPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHGHGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMV 120
           SVA+GTINFTFSQYVSV+NPNKASFSHYDSS+QLLYSGSQIGFMFIPA KIDAGQTQYM 
Sbjct: 61  SVANGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLAAPV +VGAGPTFSEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEA
Sbjct: 121 ATFSVQSFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEA 180

Query: 181 TSSCRIAIAVSDGSVLGFHC 199
           TSSCR+AIAVSDGSVLGFHC
Sbjct: 181 TSSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of Cla97C07G138290 vs. TrEMBL
Match: tr|A0A1S3BSP1|A0A1S3BSP1_CUCME (uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 3.8e-78
Identity = 177/200 (88.50%), Postives = 186/200 (93.00%), Query Frame = 0


Query: 1   MSKPH--GHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60
           M  PH  G  PPSGRTNLASC+VA XXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF
Sbjct: 1   MGNPHIPGEDPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSF 60

Query: 61  SVAHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMV 120
           SV +GTINFTFSQYVSV+NPNKASFSHYDSS+QLLYSGSQIGFMFIPA KI+AGQTQYM 
Sbjct: 61  SVTNGTINFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMA 120

Query: 121 ATFSVQSFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 180
           ATFSVQSFPLA+PV AVGAGPTFS GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA
Sbjct: 121 ATFSVQSFPLASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEA 180

Query: 181 TSSCRIAIAVSDGSVLGFHC 199
            SSCR+AIAVSDGSVLGFHC
Sbjct: 181 ISSCRVAIAVSDGSVLGFHC 200

[Close]

BLAST of Cla97C07G138290 vs. TrEMBL
Match: tr|A0A067JZ66|A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 5.7e-66
Identity = 158/208 (75.96%), Postives = 180/208 (86.54%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           M+KP    PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXX I+V+AVQLPSFSV
Sbjct: 1   MAKP--QRPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXISVNAVQLPSFSV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           ++ T+NFTFSQYVSV+NPNKASFSHYDS++QLLYSGSQ+GFMFIPA KIDAG+TQYM AT
Sbjct: 61  SNNTVNFTFSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAAT 120

Query: 121 FSVQSFPL-AAPVTAVGAGPTFSEGM---------NGYRIGPTLEIESKMDMAGRVRVLH 180
           F+VQSFPL ++P  AV  GPTF+ G+          GYR+GPT+EIES++ MAGRVRVLH
Sbjct: 121 FAVQSFPLSSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLH 180

Query: 181 FFTHHVEATSSCRIAIAVSDGSVLGFHC 199
            FTHHVEA + CR+AIAVSDGSVLGFHC
Sbjct: 181 IFTHHVEAKAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of Cla97C07G138290 vs. TrEMBL
Match: tr|B9GXJ6|B9GXJ6_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G141200v3 PE=4 SV=2)

HSP 1 Score: 255.0 bits (650), Expect = 1.4e-64
Identity = 155/209 (74.16%), Postives = 177/209 (84.69%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           MSKP  H PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXX  +V++VQLPSFSV
Sbjct: 1   MSKP--HRPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXXSVNSVQLPSFSV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           ++ T+NFTFSQYVSV+NPN+A FSH+DS++QLLYSGSQIGFMFIPA KIDAG+TQYM AT
Sbjct: 61  SNNTVNFTFSQYVSVKNPNRAVFSHFDSTLQLLYSGSQIGFMFIPAGKIDAGRTQYMAAT 120

Query: 121 FSVQSFPL-AAPVTAVGAGPTFSEG----------MNGYRIGPTLEIESKMDMAGRVRVL 180
           FSV+SFPL A+P  AV  GP F++G           NGYR+GPT+EIES++ MAGRVRVL
Sbjct: 121 FSVESFPLSASPDAAVNVGPAFNDGGFGGGGQTGFNNGYRVGPTMEIESRIQMAGRVRVL 180

Query: 181 HFFTHHVEATSSCRIAIAVSDGSVLGFHC 199
           HFFTHH+E    CR+ IAVSDGSVLGFHC
Sbjct: 181 HFFTHHLETKVGCRVVIAVSDGSVLGFHC 207

[Close]

BLAST of Cla97C07G138290 vs. TrEMBL
Match: tr|B9RCU1|B9RCU1_RICCO (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1692280 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.1e-64
Identity = 153/207 (73.91%), Postives = 178/207 (85.99%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           MSKP  H PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXX I+V+AVQLPSFSV
Sbjct: 1   MSKP--HRPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXISVNAVQLPSFSV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           ++ T+NFTFSQYVSV+NPN+A+FSHYDS++QLLYSGSQ+GFMFIPA KI++G+TQYM AT
Sbjct: 61  SNNTVNFTFSQYVSVKNPNRATFSHYDSTLQLLYSGSQVGFMFIPAGKIESGRTQYMAAT 120

Query: 121 FSVQSFPL-AAPVTAVGAGPTFS--------EGMNGYRIGPTLEIESKMDMAGRVRVLHF 180
           F+VQSFPL ++P  AV  GP F+           NG+R+GPT+EIES++ M GRVRVLH 
Sbjct: 121 FAVQSFPLSSSPDAAVNVGPAFTGSGFPGVPGSSNGFRVGPTMEIESRIQMVGRVRVLHI 180

Query: 181 FTHHVEATSSCRIAIAVSDGSVLGFHC 199
           FTHHVEA + CR+AIAVSDGSVLGFHC
Sbjct: 181 FTHHVEAKAECRVAIAVSDGSVLGFHC 205

[Close]

BLAST of Cla97C07G138290 vs. TAIR10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-43
Identity = 89/185 (48.11%), Postives = 128/185 (69.19%), Query Frame = 0


Query: 14  TNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVAHGTINFTFSQYV 73
           +NLASC VAT                       +I+V++V++PSFSVA+ +++FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 74  SVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVATFSVQSFPLAAPVT 133
           +VRNPN+A+FSHY++ +QL Y G++IG+ F+PA +I++G+T+ M+ATFSVQSFPLAA  +
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAAASS 125

Query: 134 AVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATSSCRIAIAVSDGSV 193
           +  +   F    N  R G T+EIESK++MAGRVRVL  FTH + A  +CRIAI+ SDGS+
Sbjct: 126 SQISAAQF---QNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 194 LGFHC 199
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of Cla97C07G138290 vs. TAIR10
Match: AT1G64450.1 (Glycine-rich protein family)

HSP 1 Score: 171.4 bits (433), Expect = 5.6e-43
Identity = 132/342 (38.60%), Postives = 161/342 (47.08%), Query Frame = 0


Query: 1   MSKPHGHHPPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSV 60
           M+KPH     SGRTNLASC VA XXXXXXXXXXXXXXXXX      KI+V+AVQLPSF+V
Sbjct: 1   MAKPHDRRRSSGRTNLASCAVAXXXXXXXXXXXXXXXXXXFKPKDPKISVNAVQLPSFAV 60

Query: 61  AHGTINFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVAT 120
           ++ T NF+FSQYV+VRNPN+A FSHYDSS+QLLYSG+Q+GFMFIPA KID+G+ QYM AT
Sbjct: 61  SNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAAT 120

Query: 121 FSVQSFPLAAP----VTAVGA----------GPTFSEGMNGY------------------ 180
           F+V SFP++ P    ++ V A          GP                           
Sbjct: 121 FTVHSFPISPPSSSAISTVSAAVIPDSPIIPGPXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

[Close]

BLAST of Cla97C07G138290 vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 41/134 (30.60%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 65  INFTFSQYVSVRNPNKASFSHYDSSVQLLYSGSQIGFMFIPASKIDAGQTQYMVATFSVQ 124
           +N T +  +S++NPN+  FS+  SS  L Y G  IG   +PA++I A +T  +  T ++ 
Sbjct: 107 LNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLM 166

Query: 125 SFPLAAPVTAVGAGPTFSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATSSCRI 184
           +  L +    +      S+ M G      + + + + + G+V VL  F   V+++SSC +
Sbjct: 167 ADRLLSETQLL------SDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDL 226

Query: 185 AIAVSDGSVLGFHC 199
           +I+VSD +V   HC
Sbjct: 227 SISVSDRNVTSQHC 229

The following BLAST results are available for this feature:

BLAST of Cla97C07G138290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941606.1	2.7e-83	90.91	uncharacterized protein LOC111446913 [Cucurbita moschata]	[more]
XP_004148992.1	3.5e-83	92.00	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hy...	[more]
XP_023525568.1	7.7e-83	90.40	uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo]	[more]
XP_008451958.1	5.7e-78	88.50	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]
XP_022982486.1	1.0e-74	93.42	uncharacterized protein LOC111481290 [Cucurbita maxima]	[more]

BLAST of Cla97C07G138290 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KX26\|A0A0A0KX26_CUCSA	2.3e-83	92.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1	[more]
tr\|A0A1S3BSP1\|A0A1S3BSP1_CUCME	3.8e-78	88.50	uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=...	[more]
tr\|A0A067JZ66\|A0A067JZ66_JATCU	5.7e-66	75.96	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1	[more]
tr\|B9GXJ6\|B9GXJ6_POPTR	1.4e-64	74.16	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_003G141200v3 PE=...	[more]
tr\|B9RCU1\|B9RCU1_RICCO	3.1e-64	73.91	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1692280 PE=4 SV=1	[more]

BLAST of Cla97C07G138290 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G138290 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	1.1e-43	48.11	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	5.6e-43	38.60	Glycine-rich protein family	[more]
AT3G54200.1	1.1e-09	30.60	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G138290.1	Cla97C07G138290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 73..182 e-value: 8.9E-10 score: 38.9
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..198
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 1..198
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 27..142

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G138290	Cla012811	Watermelon (97103) v1	wmwmbB173
Cla97C07G138290	Csa4G052640	Cucumber (Chinese Long) v2	cuwmbB321
Cla97C07G138290	MELO3C016302	Melon (DHL92) v3.5.1	mewmbB502
Cla97C07G138290	ClCG07G011530	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G138290	CSPI04G06460	Wild cucumber (PI 183967)	cpiwmbB331
Cla97C07G138290	Cucsa.114930	Cucumber (Gy14) v1	cgywmbB165
Cla97C07G138290	CmaCh04G006810	Cucurbita maxima (Rimu)	cmawmbB776
Cla97C07G138290	CmoCh04G007260	Cucurbita moschata (Rifu)	cmowmbB750
Cla97C07G138290	Lsi07G007260	Bottle gourd (USVL1VR-Ls)	lsiwmbB411
Cla97C07G138290	CsGy4G006380	Cucumber (Gy14) v2	cgybwmbB304
Cla97C07G138290	MELO3C016302.2	Melon (DHL92) v3.6.1	medwmbB495
Cla97C07G138290	Carg13077	Silver-seed gourd	carwmbB0045
Cla97C07G138290	CsaV3_4G006680	Cucumber (Chinese Long) v3	cucwmbB329
Cla97C07G138290	Bhi01G002307	Wax gourd	wgowmbB219

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G138290	Silver-seed gourd	carwmbB0682
Cla97C07G138290	Cucurbita maxima (Rimu)	cmawmbB350
Cla97C07G138290	Cucurbita moschata (Rifu)	cmowmbB335
Cla97C07G138290	Melon (DHL92) v3.6.1	medwmbB485
Cla97C07G138290	Melon (DHL92) v3.5.1	mewmbB491