Carg13077-RA (mRNA) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg13077-RA
Type	mRNA
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Late embryogenesis abundant protein
Location	Cucurbita_argyrosperma_scaffold_101 : 164068 .. 164664 (-)
Sequence length	597

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

mRNA sequence

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Coding sequence (CDS)

ATGAGGAAACATCACGACCACCACCCGCCATCAGGTCGCACGAACTTGGCGTCCTGTATAGTCGCCACGATCTTCTTAATCTTTGTCATCATCGTCGTCCTCATCGTCTTTTTCACCGTCTTTAAGCCTCAGGATCCAAAGATCGCCGTCTCCGCCGTCCAGTTGCCGTCCTTCTCCGTTGCCAACGGCACCGTAAATTTCACTTTCTCTCAGTACGTCTCTGTCAGAAACCCTAACAAAGCCTCTTTCTCTCACTATGACAGCTCACTCCAGCTCCTCTACTCTGGTTCACAAATTGGATTCATGTTCATTCCTGCCGGGAAAATCGACTCCGGCCAGACGCAGTACATGGCAGCGACGTTCTCCGTCCAGTCATTCCCCTTGGCCGCTCCGGTCACTGCCATCGGAGCGGGACCGACTTACTCGGAGGGAATGAACGGGTACAGAATCGGACCGACACTGGAGATTGAATCGAAGATGGATATGGCCGGTAGGGTTAGGGTATTGCACTTCTTCACTCACCATGTGGAGGCCACATTGAGTTGCAGAGTCGCCATTGCTGTAAGTGATGGATCTGTGTTAGGTTTCCACTGCTAA

Protein sequence

MRKHHDHHPPSGRTNLASCIVATIFLIFVIIVVLIVFFTVFKPQDPKIAVSAVQLPSFSVANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC

Homology

[Close]

BLAST of Carg13077-RA vs. NCBI nr
Match: XP_022941606.1 (uncharacterized protein LOC111446913 [Cucurbita moschata])

HSP 1 Score: 348.2 bits (892), Expect = 1.8e-92
Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Carg13077-RA vs. NCBI nr
Match: XP_023525568.1 (uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 346.7 bits (888), Expect = 5.3e-92
Identity = 197/198 (99.49%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAP TAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 121 FSVQSFPLAAPATAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 181 SCRVAIAVSDGSVLGFHC 198

[Close]

BLAST of Carg13077-RA vs. NCBI nr
Match: XP_022982486.1 (uncharacterized protein LOC111481290 [Cucurbita maxima])

HSP 1 Score: 319.7 bits (818), Expect = 7.0e-84
Identity = 187/198 (94.44%), Postives = 187/198 (94.44%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           MRKHHD     GRTN      XXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV
Sbjct: 43  MRKHHDXXXXXGRTNXXXXXXXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 102

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT
Sbjct: 103 ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 162

Query: 121 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 180
           FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL
Sbjct: 163 FSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATL 222

Query: 181 SCRVAIAVSDGSVLGFHC 199
           SCRVAIAVSDGSVLGFHC
Sbjct: 223 SCRVAIAVSDGSVLGFHC 240

[Close]

BLAST of Carg13077-RA vs. NCBI nr
Match: XP_004148992.1 (PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hypothetical protein Csa_4G052640 [Cucumis sativus])

HSP 1 Score: 312.0 bits (798), Expect = 1.5e-81
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Carg13077-RA vs. NCBI nr
Match: XP_008451958.1 (PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo])

HSP 1 Score: 297.0 bits (759), Expect = 4.8e-77
Identity = 170/190 (89.47%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV NGT+NFT
Sbjct: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVTNGTINFT 70

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI++GQTQYMAATFSVQSFPL
Sbjct: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMAATFSVQSFPL 130

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
           A+PV A+GAGPT+S GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA  SCRVAIAV
Sbjct: 131 ASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEAISSCRVAIAV 190

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 191 SDGSVLGFHC 200

[Close]

BLAST of Carg13077-RA vs. TAIR10
Match: AT4G23930.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 180.6 bits (457), Expect = 9.2e-46
Identity = 92/185 (49.73%), Postives = 130/185 (70.27%), Query Frame = 0


Query: 14  TNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFTFSQYV 73
           +NLASC V                      +DP+I+V++V++PSFSVAN +V+FTFSQ+ 
Sbjct: 6   SNLASCAVATLFIVFLIIAALTVYLTVFRPRDPEISVTSVKVPSFSVANSSVSFTFSQFS 65

Query: 74  SVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVT 133
           +VRNPN+A+FSHY++ +QL Y G++IG+ F+PAG+I+SG+T+ M ATFSVQSFPLAA   
Sbjct: 66  AVRNPNRAAFSHYNNVIQLFYYGNRIGYTFVPAGEIESGRTKRMLATFSVQSFPLAA--- 125

Query: 134 AIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSV 193
           A  +  + ++  N  R G T+EIESK++MAGRVRVL  FTH + A  +CR+AI+ SDGS+
Sbjct: 126 ASSSQISAAQFQNSDRSGSTVEIESKLEMAGRVRVLGLFTHRIAAKCNCRIAISSSDGSI 185

Query: 194 LGFHC 199
           +   C
Sbjct: 186 VAVRC 187

[Close]

BLAST of Carg13077-RA vs. TAIR10
Match: AT1G64450.1 (Glycine-rich protein family)

HSP 1 Score: 179.5 bits (454), Expect = 2.0e-45
Identity = 137/342 (40.06%), Postives = 164/342 (47.95%), Query Frame = 0


Query: 1   MRKHHDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSV 60
           M K HD    SGRTNLASC V XXXXXXXXXXXXXXXXXX   +DPKI+V+AVQLPSF+V
Sbjct: 1   MAKPHDRRRSSGRTNLASCAVAXXXXXXXXXXXXXXXXXXFKPKDPKISVNAVQLPSFAV 60

Query: 61  ANGTVNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAAT 120
           +N T NF+FSQYV+VRNPN+A FSHYDSS+QLLYSG+Q+GFMFIPAGKIDSG+ QYMAAT
Sbjct: 61  SNNTANFSFSQYVAVRNPNRAVFSHYDSSIQLLYSGNQVGFMFIPAGKIDSGRIQYMAAT 120

Query: 121 FSVQSFPLAAP----VTAIGA----------GPTYSEGMNGY------------------ 180
           F+V SFP++ P    ++ + A          GP                           
Sbjct: 121 FTVHSFPISPPSSSAISTVSAAVIPDSPIIPGPXXXXXXXXXXXXXXXXXXXXXXXXXXX 180

Query: 181 ------------------------------------------------------------ 199
                                                                       
Sbjct: 181 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 240

[Close]

BLAST of Carg13077-RA vs. TAIR10
Match: AT3G54200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-08
Identity = 39/134 (29.10%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +N T +  +S++NPN+  FS+  SS  L Y G  IG   +PA +I + +T  +  T ++ 
Sbjct: 107 LNLTLNVDLSLKNPNRIGFSYDSSSALLNYRGQVIGEAPLPANRIAARKTVPLNITLTLM 166

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           +  L +    +      S+ M G      + + + + + G+V VL  F   V+++ SC +
Sbjct: 167 ADRLLSETQLL------SDVMAG-----VIPLNTFVKVTGKVTVLKIFKIKVQSSSSCDL 226

Query: 185 AIAVSDGSVLGFHC 199
           +I+VSD +V   HC
Sbjct: 227 SISVSDRNVTSQHC 229

[Close]

BLAST of Carg13077-RA vs. TAIR10
Match: AT2G46150.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 45.1 bits (105), Expect = 6.0e-05
Identity = 36/162 (22.22%), Postives = 68/162 (41.98%), Query Frame = 0


Query: 44  QDPKIAVSAVQLPSFSVANGT-------VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSG 103
           +DP I ++ V +       GT        N +    VSV+NPN ASF + +++  + Y G
Sbjct: 64  KDPIIKMNGVMVNGLDSVTGTNQVQLLGTNISMIVDVSVKNPNTASFKYSNTTTDIYYKG 123

Query: 104 SQIGFMFIPAGKIDSGQTQYMAATFSVQSFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEI 163
           + +G      GK    +T  M  T  +    L   ++  G G   S           + +
Sbjct: 124 TLVGEAHGLPGKARPHRTSRMNVTVDIM---LDRILSDPGLGREISR-------SGLVNV 183

Query: 164 ESKMDMAGRVRVLHFFTHHVEATLSCRVAIAVSDGSVLGFHC 199
            S   + G+V+++     HV   ++C +A+ ++  ++    C
Sbjct: 184 WSYTRVGGKVKIMGIVKKHVTVKMNCTMAVNITGQAIQDVDC 215

[Close]

BLAST of Carg13077-RA vs. TrEMBL
Match: tr|A0A0A0KX26|A0A0A0KX26_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1)

HSP 1 Score: 312.0 bits (798), Expect = 9.6e-82
Identity = 177/194 (91.24%), Postives = 185/194 (95.36%), Query Frame = 0


Query: 5   HDHHPPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGT 64
           H  HPPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSVANGT
Sbjct: 7   HGDHPPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVANGT 66

Query: 65  VNFTFSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQ 124
           +NFTFSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKID+GQTQYMAATFSVQ
Sbjct: 67  INFTFSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDAGQTQYMAATFSVQ 126

Query: 125 SFPLAAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRV 184
           SFPLAAPV ++GAGPT+SEGMNGYR+GP LEIESKMDMAGRVRVLHFFTHHVEAT SCRV
Sbjct: 127 SFPLAAPVASVGAGPTFSEGMNGYRVGPILEIESKMDMAGRVRVLHFFTHHVEATSSCRV 186

Query: 185 AIAVSDGSVLGFHC 199
           AIAVSDGSVLGFHC
Sbjct: 187 AIAVSDGSVLGFHC 200

[Close]

BLAST of Carg13077-RA vs. TrEMBL
Match: tr|A0A1S3BSP1|A0A1S3BSP1_CUCME (uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 3.2e-77
Identity = 170/190 (89.47%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX   KIAVSAVQLPSFSV NGT+NFT
Sbjct: 11  PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXXXXKIAVSAVQLPSFSVTNGTINFT 70

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKI++GQTQYMAATFSVQSFPL
Sbjct: 71  FSQYVSVKNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIEAGQTQYMAATFSVQSFPL 130

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
           A+PV A+GAGPT+S GMNGYR+GP LEIESKMDMAGRVRVL+FFTHHVEA  SCRVAIAV
Sbjct: 131 ASPVAAVGAGPTFSGGMNGYRVGPILEIESKMDMAGRVRVLNFFTHHVEAISSCRVAIAV 190

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 191 SDGSVLGFHC 200

[Close]

BLAST of Carg13077-RA vs. TrEMBL
Match: tr|F6HU27|F6HU27_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 4.3e-66
Identity = 148/190 (77.89%), Postives = 173/190 (91.05%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASC+V XXXXXXXXXXXXXXXXXXXXX++P I+V+AVQLPSF+++NGTVNFT
Sbjct: 7   PPSGRTNLASCVVAXXXXXXXXXXXXXXXXXXXXXKEPIISVNAVQLPSFAISNGTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKA FSHYDS+LQLLY G+Q+GFMFIPAGKI SG+TQYMAATF+V+SFPL
Sbjct: 67  FSQYVSVKNPNKAEFSHYDSTLQLLYGGNQVGFMFIPAGKIGSGRTQYMAATFAVESFPL 126

Query: 129 AAPVTAIGAGPTYSEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAIAV 188
            A   ++  GPT ++G+ G+RIGP LEIES+M+MAGRVRVLHFFTHHV+A   CRV+IAV
Sbjct: 127 GAVPESV--GPTITDGLGGFRIGPNLEIESRMEMAGRVRVLHFFTHHVDARAVCRVSIAV 186

Query: 189 SDGSVLGFHC 199
           SDGSVLGFHC
Sbjct: 187 SDGSVLGFHC 194

[Close]

BLAST of Carg13077-RA vs. TrEMBL
Match: tr|A0A067JZ66|A0A067JZ66_JATCU (Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.7e-66
Identity = 153/200 (76.50%), Postives = 172/200 (86.00%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIV  XXXXXXXXXXXXXXXXXXXX    I+V+AVQLPSFSV+N TVNFT
Sbjct: 7   PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXXXXXXXISVNAVQLPSFSVSNNTVNFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYVSV+NPNKASFSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+TQYMAATF+VQSFPL
Sbjct: 67  FSQYVSVKNPNKASFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTQYMAATFAVQSFPL 126

Query: 129 -AAPVTAIGAGPTYSEGM---------NGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEA 188
            ++P  A+  GPT++ G+          GYR+GPT+EIES++ MAGRVRVLH FTHHVEA
Sbjct: 127 SSSPDAAVNVGPTFAGGVLPGGYPSVNGGYRVGPTMEIESRIHMAGRVRVLHIFTHHVEA 186

Query: 189 TLSCRVAIAVSDGSVLGFHC 199
              CRVAIAVSDGSVLGFHC
Sbjct: 187 KAGCRVAIAVSDGSVLGFHC 206

[Close]

BLAST of Carg13077-RA vs. TrEMBL
Match: tr|A0A2I4EY48|A0A2I4EY48_9ROSI (uncharacterized protein LOC108993768 OS=Juglans regia OX=51240 GN=LOC108993768 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.3e-65
Identity = 146/192 (76.04%), Postives = 166/192 (86.46%), Query Frame = 0


Query: 9   PPSGRTNLASCIVXXXXXXXXXXXXXXXXXXXXXXQDPKIAVSAVQLPSFSVANGTVNFT 68
           PPSGRTNLASCIV  XXXXXXXXXXXXXXXXXX   DPKI+V AVQLPSF+++N TV+FT
Sbjct: 7   PPSGRTNLASCIVATXXXXXXXXXXXXXXXXXXKAHDPKISVIAVQLPSFTLSNSTVSFT 66

Query: 69  FSQYVSVRNPNKASFSHYDSSLQLLYSGSQIGFMFIPAGKIDSGQTQYMAATFSVQSFPL 128
           FSQYV+VRNPN+A FSHYDS+LQLLYSGSQ+GFMFIPAGKID+G+T+YM ATF+VQSFPL
Sbjct: 67  FSQYVAVRNPNRADFSHYDSTLQLLYSGSQVGFMFIPAGKIDAGRTEYMTATFAVQSFPL 126

Query: 129 AAPVTAIGAGPTY--SEGMNGYRIGPTLEIESKMDMAGRVRVLHFFTHHVEATLSCRVAI 188
            AP T    GP++  S G  G RIGPT+EIES+M+MAGRVRVLHFFTHHV+    C+V I
Sbjct: 127 TAPQTVGVLGPSFPGSGGGGGIRIGPTMEIESRMEMAGRVRVLHFFTHHVDTKTDCKVVI 186

Query: 189 AVSDGSVLGFHC 199
           AVSDGSVLGFHC
Sbjct: 187 AVSDGSVLGFHC 198

The following BLAST results are available for this feature:

BLAST of Carg13077-RA vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022941606.1	1.8e-92	100.00	uncharacterized protein LOC111446913 [Cucurbita moschata]	[more]
XP_023525568.1	5.3e-92	99.49	uncharacterized protein LOC111789137 [Cucurbita pepo subsp. pepo]	[more]
XP_022982486.1	7.0e-84	94.44	uncharacterized protein LOC111481290 [Cucurbita maxima]	[more]
XP_004148992.1	1.5e-81	91.24	PREDICTED: uncharacterized protein LOC101209064 [Cucumis sativus] >KGN53414.1 hy...	[more]
XP_008451958.1	4.8e-77	89.47	PREDICTED: uncharacterized protein LOC103493106 [Cucumis melo]	[more]

BLAST of Carg13077-RA vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23930.1	9.2e-46	49.73	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT1G64450.1	2.0e-45	40.06	Glycine-rich protein family	[more]
AT3G54200.1	1.2e-08	29.10	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]
AT2G46150.1	6.0e-05	22.22	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family	[more]

BLAST of Carg13077-RA vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg13077-RA vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KX26\|A0A0A0KX26_CUCSA	9.6e-82	91.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G052640 PE=4 SV=1	[more]
tr\|A0A1S3BSP1\|A0A1S3BSP1_CUCME	3.2e-77	89.47	uncharacterized protein LOC103493106 OS=Cucumis melo OX=3656 GN=LOC103493106 PE=...	[more]
tr\|F6HU27\|F6HU27_VITVI	4.3e-66	77.89	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_02s0025g01600 PE=4 SV=...	[more]
tr\|A0A067JZ66\|A0A067JZ66_JATCU	9.7e-66	76.50	Uncharacterized protein OS=Jatropha curcas OX=180498 GN=JCGZ_20441 PE=4 SV=1	[more]
tr\|A0A2I4EY48\|A0A2I4EY48_9ROSI	6.3e-65	76.04	uncharacterized protein LOC108993768 OS=Juglans regia OX=51240 GN=LOC108993768 P...	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004864	LEA_2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Carg13077	Carg13077	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13077-RA.CDS.1	Carg13077-RA.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Carg13077-RA.exon.1	Carg13077-RA.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Carg13077-RA	Carg13077-RA-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004864	Late embryogenesis abundant protein, LEA_2 subgroup	PFAM	PF03168	LEA_2	coord: 73..182 e-value: 3.6E-10 score: 40.2
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 5..198
None	No IPR available	PANTHER	PTHR31852:SF22	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 5..198
None	No IPR available	SUPERFAMILY	SSF117070	LEA14-like	coord: 28..147